TCONS_00017985 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017985
Unique NameTCONS_00017985
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length875

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017985 ID=TCONS_00017985|Name=TCONS_00017985|organism=Clytia hemisphaerica|type=transcript|length=875bp
GAGAATGTGAGATACAGGGGTGTTAATTCACACCAGGGTTTGTCATTGAA
TTTTAAGGTTCCagtatattgaaaagttttaatttcaaattttctttcat
ttagaTGGACTTCCGAATGCAGACAAACGGAAAATGAAAACCAACGCCCT
TAACATCACGCTTGATTCGTCAGCGCGTACGCGTTACACCAAAGTGAGGC
TACATAGAAACGAGGCTGGTTAAATTGCAACAaacaaagGCATGATCTTT
GGGTGTGTTCTCCAACTTGGATCGACATACTGTGTTCGATAATTCTCCAC
CAGGCCCTTTACATTTGGCTGCACGTGTCATAACGAAGACGAACATCGAA
ACGAGACTGGGAAACTGGAATCGAGGCTGATGAAAAAGTATGGTCATTAA
ACGATCGTTGAGCGTCAAATGGACGTCAATTGGATGCAAGATGAACGTCG
AATGGATGCAAGATGAACGTCGAATGGACGCAAGACGAATGTCGAATGGA
TGGAAAATGTATGTCGTTTGGATGGTGTGGTTTTTATGAAAGCCATTCCT
CGAAGTATCAGAACACTTTTGACAAACATTTGAGAGTAGTATTTCATATA
GGTTATCATACATGATTTTTATATTTAGGATTTGTCAAGACAGGGGATTT
GTTACTTACACcacctgaaaaattacaaaactttgggaatctttttttat
aagaacatcttatgAGAAAATCCAacatttttaggcctttagatgttttt
taagtttaaagtctaaaaatgttctaaaaatgttctaaacattAACACTT
TGtgattattttgtttatttttctaagtGATTTGATGTTTTCGAGTCAAC
AAAGCTTAAAAACGTTTACTAACTT
Run BLAST on NCBI

transcript from alignment at sc0000282:188376..191087+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017985 ID=TCONS_00017985|Name=TCONS_00017985|organism=Clytia hemisphaerica|type=transcript|length=2712bp|location=Sequence derived from alignment at sc0000282:188376..191087+ (Clytia hemisphaerica)
GAGAATGTGAGATACAGGGGTGTTAATTCACACCAGGGTTTGTCATTGAA
TTTTAAGGTTCCagtatattgaaaagttttaatttcaaattttctttcat
ttagaTGGACTTCCGAATGCAGACAAACGGAAAATGAAAACCAACGCCCT
TAACATCACGCTTGATTCGTCAGCGCGTACGCGTTACACCAAAGTGAGGC
TACATAGAAACGAGGCTGGTTAAATTGCAACAaacaaaggtttgttttta
aattatgttttttttactgTCATACATTTTAATGATTTCTATATGCATAA
ATTTCGAACTGAGTGAATTCCTTTCTCTCTACATTCGGTAACGTTTTGAA
ACTTTCTTTAAAGCTCTTGATTTTCAGAAATGTATTTACTATTTTGGGTA
ACTTTATgaatcgttttcaaatttacataCGCGCTTTTTAAAATGCTTTT
TcgtttcatcatggatattctcaactttttgaaaatcatcctaaaatctT
CTTACGGCATTTTTCATAAGTTAGGGTCTAAattcatattcttatttttt
tggccaaattcatcatgaatattcttctAAAGTATATTCGTATAAAAAAG
GCGCGTATTTTAACATTCTCGATTTCCTTTATTCAGGCATGATCTTTGGG
TGTGTTCTCCAACTTGGATCGACATACTGTGTTCGATAATTCTCCACCAG
GCCCTTTACATTTGGCTGCACGTGTCATAACGAAGACGAACATCGAAACG
AGACTGGGAAACTGGAATCGAGGCTGATGAAAAAGGTTTGTATAGTATTC
CAAAAATTGTATATTTGATATTGAGTGAAACTTGTAATTTCTCATGATGT
TGAACCTGGACAATTTTTGAACCATACTTTTCAGGTATGTTTTAAATTAT
ATAAATCATTGTTTATTGACcagtgattttttaaatattcttgcCTTATA
GTATGGTCATTAAACCATGAATAAACGATCGTTGAGTGTTAAATGGACGT
CGAATGGATGCAAGATGAACGTCGAATGGATGCGAGATGAACGTCGAATG
GACGCAAGACGAACGTCGAATGGATGGAAAATGTATATCGATTGGATCGA
GACTAACGAGGGAAAACTACTTTGGATGGTGTGGTTTTTATGAAAGCCAT
TCCTCGAAGTATAAGAACACTTTTGACAAACATTTGAGAGTAGTATTTCA
TATAGGTTATCATACATGATTTTTATATTTATGATTTGTCAAGACAGGGA
ATTTGTTACTTACACCACGTGAACAATTACAAAACTTTGggaatcttttt
ttataagaacatcttataagaacatccaaaatttttgaagccttcagatg
ttctttaacttttaagttttgagtctaaaaatgttctaaacatgttctta
ttttaaacactttgtgagtgtttttgtttatttttacaaGTGATTCGAGT
CAACAAAGCTTAAAAACGTTTCTTAACTTGCTCTAATGTTTTGGTCAAAT
CAAGtgtaatttgttcttataaaaaacataatttttttctataattAAAG
CATATTGTAAAAATCATCATGTTACGATTTTCTTATACATAAACTTTTTA
GTCagcaattattattattactaatattttaaatataaaagaaaattaca
aaatcgaaTTATTCTTCTACAATTCTTGAACTAAAAAAGCTGTCCTTAAT
TCTTATAACAAATGCATAAGCACAGTACTTATAAGCATCAGAAGATAATC
AGCCAATACATTACTTCATGCTTCTTATAATAAATATTTCGACCAATTTA
TGtaaacaaaatattcaaataagaaATTGTTACCCATATATATAATCATG
CTATCGTTAATGCAATACGTTCTAAGCGACGTTCTAGCGCCATTAAATCC
ATAATCTAAATGCAACGGCCGCAAAAACCGTACGGAGCGACGTCCTAGCG
CCGTAAAATCCATAAACCAAACGTGATGGCCCTAAATATCGTCCTGAACG
ACGTATTGTCGCCGATATCGGGGCCCCCATTTGAAAATTGTCCACCCAAT
TGCCCAGAAAATCCAGCTTTCGGCGAAATTTTCAGCTCTAAAATAAGCAC
TACGATGGAGAGCATTTTGNATTTTCAGGTATGTTTTAAATTATATAAAT
CATTGTTTATTGACcagtgatttttgaaatattcttgcCTTATAGTATGG
TCATTAAACGATCGTTGAGCGTCAAATGGACGTCAATTGGATGCAAGATG
AACGTCGAATGGATGCAAGATGAACGTCGAATGGACGCAAGACGAATGTC
GAATGGATGGAAAATGTATGTCGATTGGATCGAGACTAACGAGGGAAAAC
TACTTTGGATGGTGTGGTTTTTATGAAAGCCATTCCTCGAAGTATCAGAA
CACTTTTGACAAACATTTGAGAGTAGTATTTCATATAGGTTATCATACAT
GATTTTTATATTTAGGATTTGTCAAGACAGGGGATTTGTTACTTACACca
cctgaaaaattacaaaactttgggaatctttttttataagaacatcttat
gAGAAAATCCAacatttttaggcctttagatgttttttaagtttaaagtc
taaaaatgttctaaaaatgttctaaacattAACACTTTGtgattattttg
tttatttttctaagtGATTTGATGTTTTCGAGTCAACAAAGCTTAAAAAC
GTTTACTAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010081XLOC_010081Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017985-exon-sc0000282-1491911889:188376..188614TCONS_00017985-exon-sc0000282-1491911889:188376..188614Clytia hemisphaericaexon
TCONS_00017985-exon-sc0000282-1510915933:188376..188614TCONS_00017985-exon-sc0000282-1510915933:188376..188614Clytia hemisphaericaexon
TCONS_00017985-exon-sc0000282-1575043694:188376..188614TCONS_00017985-exon-sc0000282-1575043694:188376..188614Clytia hemisphaericaexon
TCONS_00017985-exon-sc0000282-1491911889:189012..189160TCONS_00017985-exon-sc0000282-1491911889:189012..189160Clytia hemisphaericaexon
TCONS_00017985-exon-sc0000282-1510915933:189012..189160TCONS_00017985-exon-sc0000282-1510915933:189012..189160Clytia hemisphaericaexon
TCONS_00017985-exon-sc0000282-1575043694:189012..189160TCONS_00017985-exon-sc0000282-1575043694:189012..189160Clytia hemisphaericaexon
TCONS_00017985-exon-sc0000282-1491911889:190571..190698TCONS_00017985-exon-sc0000282-1491911889:190571..190698Clytia hemisphaericaexon
TCONS_00017985-exon-sc0000282-1510915933:190571..190698TCONS_00017985-exon-sc0000282-1510915933:190571..190698Clytia hemisphaericaexon
TCONS_00017985-exon-sc0000282-1575043694:190571..190698TCONS_00017985-exon-sc0000282-1575043694:190571..190698Clytia hemisphaericaexon
TCONS_00017985-exon-sc0000282-1491911889:190729..191087TCONS_00017985-exon-sc0000282-1491911889:190729..191087Clytia hemisphaericaexon
TCONS_00017985-exon-sc0000282-1510915933:190729..191087TCONS_00017985-exon-sc0000282-1510915933:190729..191087Clytia hemisphaericaexon
TCONS_00017985-exon-sc0000282-1575043694:190729..191087TCONS_00017985-exon-sc0000282-1575043694:190729..191087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000282supercontigsc0000282:188376..191087 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
70.1564	66.1279	32.8716	27.144	0.359187	0.397368	0.136974	0.0641166	0	0.111206	0	0	0	0	0	0.324612	0.399895	0.450867	0	0	1.28761	1.20586	216.583	169.808	0.171581	0.867745	7.30436	14.0317	137.94	191.08
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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