TCONS_00017986 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017986
Unique NameTCONS_00017986
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017986 ID=TCONS_00017986|Name=TCONS_00017986|organism=Clytia hemisphaerica|type=transcript|length=385bp
ATCAAATTACTTAGTAGAAAAGAGTGCATTTATGTGTTTTTCGATGAAAG
AtgacaaaaggtgaattttGTTGTAGTGAGTGTACTAATCATATcgtgtt
tttagttttttatgaggagaaagatttctgaagaaaattgtttttggTTA
CGCCAGCTTCTCAGAGGTTGTTGCCATGACATTGACGATCGCTGCTCTAA
TCCCTGCAATCCAATTCTGGTTACGACTTGCCACCTTCCTTCATGGACCT
CTAAAATCATTTCTACTTCATGTACTCCATAACCTCTCAAATGACCCTAC
ATACAATGGTCTACCTCAAGACCCTCAAAAACTATATCAAGCACTCTCGA
CAGATGCCAATCATCAAAAGAAGATAAAGAAGTTG
Run BLAST on NCBI

transcript from alignment at sc0000282:253639..265850+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017986 ID=TCONS_00017986|Name=TCONS_00017986|organism=Clytia hemisphaerica|type=transcript|length=12212bp|location=Sequence derived from alignment at sc0000282:253639..265850+ (Clytia hemisphaerica)
ATCAAATTACTTAGTAGAAAAGAGTGCATTTATGTGTTTTTCGATGAAAG
AtgacaaaaggtgaattttGTTGTAGTGAGTGTACTAATCATATcgtgtt
tttagttttttatgaggagaaagatttctgaagaaaattgtttttggTTA
CGCCAGCTTCTCAGGTACTTAAATTGTAATTCACATCATTTTATGAACAA
GTACATAGGATCAGATAGGGATTGcttgtgagaaaaaaaatatctacGCC
TCAGTGACAAGGCGAGAATATCTTAGCCACGCCGAGATAAAATGAAAGTA
CTAAATGGGAAAATGTCTCACTTCAATAGTTTGGTATATAGTTTGAAAGT
TAAAAATTCTGCAATTGTAAAAACTACCGGGGGGAGATGGTGTGTAGGGT
ATAAGTTTTTCAAGACCCTCGAAAGGCACTGTAACAGtgtacttttttat
tatttacttttttgcacTACACGGGTACACTGCAAGGGTGTGTTTGGTGA
CTGGTGTCTGatatatctttatagttttggcTTGCAtccattttgaattg
ttttgcacattgtgtAGACATCTTAGGCTCTTTTTCAGGttgcttcagca
aaataagatatgaaatcaaactgcACTGTAAGACTAAGAGTCAGAaacgg
tctgtaaaatacactcAGCACATGCCGTCGCTCGATATCGAGTGCCCCCT
GGGTAAAATCTACAAAAGCATCCAGCAAGGActattttttaaacatctgt
ttcccaggcatagcccttttggaaaatttgatctgtttgccaaaaatttc
aaagtcctcaaaacctaaatttttaatctcaaagtatcttccctagaaaa
tttggtctgtttccacaattttcagaattaaaattttgatctgttctccc
aAGCTTACAAGGAATaggatacacgcttttttttttaaagaatggtgtaa
atccatttcatcatggatattcttaacttttttgggaaaatcatcctaaa
atattcttacagcaaattcttaggttaggatcctaattcatactagattt
aacatttagtacatacgtctcaagcataaaatggcacttttgtaaaagga
gtgagtCTAgcttgaaaatgctcttaaaatggcattcgtAGCTTTtaagt
agcaaaattccatgatggtgatattcttagcatactttaatcgtataaat
tttagcgagactaattttagcgttttagcgagttttccctattttcgcta
aaataaatctcgctaaaacacgccgaatcaacagatcgctaaaatttatc
cgcgcgaaatttctggttatattgccttgataaatttttatcaatagaaa
gGCTTTCAAtatgcaaagaaatgctagaaaacaaattcagtcaataatgt
aatacaagtattcgctaaaatttatccacgcgaaattttttgaaatcgtg
attcgctaaaataaatccaaaaaaaatcaagattttgctagctcgctaat
atacgctaaaattagtctcgctaaaatttctacgattaaagtattcttag
ttttttggccattttcatcatggacattcttataaagtgtattcttataa
aaaaaagcgtgtatctgtttccctctcctcgaaatttttatctgtttccc
ttgctttttgtgattgatatctgttttccccaagaaagttcaatctgttt
ccaatgcaatatcatcttttttggaaacagatatctgtttcccaatttac
tatgtcatctcctagaaatattgatctgtttctctctgatggaGCGGGGA
CACAGATAGTTTTAAAGAAAAGGTCTTTCCTAGAAGATCGGATCTGTTTc
ctcatttttcaaaagaagcttTCTCCTGGAAActggaaacagatatttcg
gggaaatgggttCGTTGGCTGCCTCTGAATCTACTTCAGACACAAAGATT
TTAAGCCGACCTTAGCGATGGAATGCTCCTCCATAGTTacagcatagtat
aagaaagccgcggctgctggaatgataacatctgaatttctgttgttcta
tctctgtcgtatttgatgactatttgttgatcaagaaataagtaatgtag
catctttaatggtaaattttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNTCtcctcaaaacctaaatttttaatctcaaagta
tcttccctagaaaatttggtctgtttccacaattttcagaattaaaattt
tgatctgttctcccaAGCTTACAAGGAATaggatacacgctttttttttt
aaagaatggtgtaaatccatttcatcatggatattcttaacttttttggg
aaaatcatcctaaaatattcttacagcaaattcttaggttaggatcctaa
ttcatactagatttaacatttagtacatacgtctcaagcataaaatggca
cttttgtaaaaggagtgagtCTAgcttgaaaatgctcttaaaatggcatt
cgtAGCTTTTAAGTAGcgaaattccatgatggtgatattcttagtttttt
ggccattttcatcatggacatttttataaagagtgtattcttataaaaaa
aagcgtgtatctgtttctctctcctggaaatttttatctgtttcccttgc
tttttgtgattgatatctgttttccccaagaaagttcaatctgtttccaa
tgcaatatcatctttttttgaaacagatatctgtttcccaatttactatg
tcatctcctagaaatattgatctgtttctctctgatggaGCGGGGACACA
GatagttttaaagaaaaagtcTTTCCTAGAAGATCGGATCTGTTTcctca
tttttcaaaagaagcttTCTCCTGGAAActggaaacagatatttcgggga
aatgggttCGTTGGCTGCCTCTGAATCTACTTCAGACACAAAGATTTTAA
GCCGACCTTAGCGATGGAATGCTCCTCCATAGTTACAGGGGGTTgagtaa
aaaaactaaaatattgtattttttgaaaagtattgaAAAGAGGTAAGCTT
AGGCAGCCTTATTTCGTTTGTAATTCTGATACATGAGTTTTAGTCGTAGA
AAATATTGGTGTACCTTTCAATAatcagttcttacaaagtaaacagtAAA
TTGATAACAAAATAAACACATATATAATTCTTTTAAGCACACTTACTTTA
TAagatcaaatcaataattctaaattgaaacaagagccgcaaaaaTGCGG
GTAAAGATTTCCTTTATAATCGACCTAAATAAATAGTTTGTCGGCATGGC
TCAAAAATATGTTAAGTTCAAAAGTTCAGACTCTATCGTTTTTAGACTAG
AGAACAAGTCTGTTATTAATTTTCGCGCAAGATTTAGAGTTGGGATAGTA
GTTAGGTAAAGTCAGGAAAACGTACACACGGAAAATTACGCGcggagaaa
gaggaaaataacatttgaaatttgagaatatcgtTCTAGATACACTTTCC
CGATTTTACCACTCTAGTAAGATTTTCCGATGTGATGTTTCTCAAACATC
CGGCCATTTCATTCAACGACTATACTAGTCTATATCGTTTTACAAGTTCA
TTTTCGGATAACGTTGATTTTAAGTCTGATATGTTATAGTCTGATATATT
AGTAATATATAATCATATCGAAACTTTTCCCTTACTTTCGCAACGGTAAC
CAAAACCGAAGTAGATATATAAATACATAAACTACGTTTTTCCCATCACT
AAGCAGTCGCGTAATTTGAACACGCGAAGGAGTAGAGAGCGAAAAgaagt
tttgtaaaaaaaggGCCTCCGAGGGATTTTAGTACGCATGCTCAGTGTGT
GACGTGCTAGGGTTAAATAAAAATAGCAGCTattaattttccaaaataac
tcGGGATATTTAGACTGGCACACCAGTCGGGTTGGAATTGGGTAAGCGTA
GGAAATTTTGTCAGCGGCAAAGGCTGAAAGttgttaatcagcagcctctc
accaaattttgctcgttctcctactcAGCTCCTGTATTAGCAAACGCTCG
CCGCCTTTAttttcccgccctctgacatgattaattaacagactagtttg
ctagtctagggATATTAACCTGTCTTTCgctattttgttatttttctttt
catgtgAAGTAACATCGAGAAATTGAGACGACCAGCCAAATGGATATCCa
tatttcattcatttcattTGGATCTAGGATTTGGAGGAGGGTACTATGCA
AAACTAAATTTGCTCTATAAAGTATCAAAGGAAGGCCCACCTTGTTTGGG
CCGGCGGaccagaacatttttgaaaattggctCCTCTAGATTGGCTTAAA
CGGCAACATTTTTATCaggtttttatcaaaattttagtcAGAATTAGTAC
GAAAAATGTATCCTTTTTCTAataaaaaccatcaattttCATTGGGGCTT
GGCTTCTCCTGTATTTTtcgaattgttcttataaaaaagcaataaataaa
aattagtaaTATTTTGCTACTTTAAGCTTTTGTAATCATGGCGAAATTCT
TATAGCTATATGACAGTTAGAAAGACTCACAAtggctattttcttttgtt
ctaacCATACATGTTAAACTGgttattaaaattaaaatccattaaaaaat
tctttcccctTTTGTTGAAGTTTTGATTGATAAGAGATGTGACGGAGAGA
TATTGTTTTGCGAAAGGGGAGATAATTATGCGTGAAAGTATGAATAAATT
TTCTTCCATGAATTTGTTATTGTTGTGTTAGTAGAGAATATTTCAGTCTT
TTTGACGAATTTATCGTAAAAAGCAGGAAGCATAACATCAAGGAGCAACT
ATTTATAAGAATGGAATCAATAACTCTTCGTAGAcggccatatacctttc
ggtaattagttctttcgttcatacaaagtaaacaagggattgCGAGCAAT
Atcaacatatttatttttcttataagcaactacaattatggtcaaaatct
attgagaattaagcttatttcctcgtttttagaaatttggagttcgggcg
agaaagtcgattttgggccatctcttaaattcaatcggatttttcaattt
ggctcgggtttatagacttccaggctatattatgagccttattgtacaat
ttttgaaattttggatcctcagattctaaggtccTAAAACTTTACCCTTC
CAACAAGTTAGAACGCTTCCAAATCGATCgtggctataagatttcgtgag
aatttcccttttttctcaaatattatgaccatgattgtactttaaaagaa
tcaaatcaacCACTCTTCATAGACGGCCATATACCTAAGTAAACAAGGGA
TTGCGAACAATGTCAGCATATTAATTTATAGACGATGGAAATTACACAAT
AtgacatagcgtcagcccccctgCTAGTTgggggggggttacaccctaaa
tctttcccaaaaaaggagggggctggaagtacaccatttttttgggggga
cctataTGTAATTGGGGGGAGCTgaaatctcatcacttaacatgggtgct
aaaataattcagcttaatagttgaCTTCAATTACCTtaattgaagctcat
gaatctgaaaaatttttgcCTGCGCCGCAATATTTTTATAAAAAGTGTGC
AAAATATCTTATCTTAAACTTAGAACTGAATGCAAATTACATTGGAAAAC
CCTTTTTTACTGGATCAATTTTTTGAAAGTGTCTAGGGTCAAAAGTCCTG
GGGGCTGACAAAAAATTCATAAATCTTTGGGtggacttaaaactcagggg
ggggggctaatttttgcctgggacctaaactcaggctgacgctatgtatg
agcatatttatttttctcataagcaactactttataagaatgaaatcaat
aactcttgaagcGGCCATATACCTCTCGGTAAATAGTTTTTCCGTtcata
caaagtaaacaagagattgCGAACAATATCAGAGTATTAATTTATAAACA
AGGGGCAGCACACAACTAGTCATAGCACTGTTTTGATAGCCTTTTATAGA
TGAACATTCTACGGAAGTCTGTTAGTGCCATCATATTATCAGGAGATAAT
AATCAAATTATCTTAAGAAAACTGATTTAACTCAATAAGATTTTGTCCCT
GGATGTTTATCTCCGTGTTTATCTCAAAATAATTACATCTCAAGATAAAT
TTATCCCTGgatatttatctcgagataaatttaTCCCTGaatatttatct
cgagataaatttaTCCCTGAATATTTATCTTGAGATAAATTTATCCCTGA
ATATTTATCTTGAGATAAATATATCCCTgtatctcgagataaatttaTCT
TTGGATATTTATCTCAAGATAAATATCCAGGGATAAATTTAGGGTTATTA
TTTAAGGTTCCATTTGGCATACTGGAAAAGTGGGAACCAAATTGGAACCT
CaagtgggaacctaagtggAAGCTGTAATTGGGAACCTTAAGTGGGAGTC
CTAAGTGGGAACCCTAAGTGGGAgccctaagtgggaacctaagttgGAAC
CCTATGTAGGGACCAAATTGGGAACcttaagtgggaacctaattgGGAGc
cctaaagtgggaaccctaAGTGGGAGCCCTAAAGTGGGAAACCTAAGTGG
GAGCCCTAAGTGAGAATCCTAAGTGGAACCCTAAGTGTGAACCTAAGTGG
AGCAATAAGTGGGAACCAAGGTTGGAGGAACCAAGGTTGGGGGAACCAAG
GTTGGGGAAACCAAGGTTGGGTTGGGGGAACCAAAGTGGGAACCAAAGTG
GGGGGAACCCTAAATGGGAATCTAAGTGGAACCTTAAGTAAGAAACTAAG
TGGAACCCTAAGTAGAAACTCTAAGTGGAAACCTTAGGTGGGAACCCTAA
ATGGAAATCCTAAGTAGGAGGTCTATAATAGAACACCAGTTTGCCACTTT
GCACAAGCTATGTAATGCACAAAAATTTGatataccaacacaataatCAG
TAAAAcaaacccccggggggggggtacttaggcaaatggagggtacggta
tgtgccgcccttaagggtaccttttttggacttccaaagtcccgctaagg
gtcggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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gaaaattatgaacagctgttgtCAGGTCACATCTTTGTAAAtgttataaa
aacaaattttacacgtcttctgaaatttgaaaaaactaaatgaTTGAATA
Gctataaaaattaataaaaaggctaattattaaaaagtaaagaaaattga
CGCAATGTGCTTGTCGTAGGGAATGAAAAATGTGGAGGACGCGCCAAAGA
CAAAGAGGGTGTATTCACactgaaagtttcaagctaATGGCCTTAACGAG
TTTAAATTATAAGATGTTTTGTTGTACAGGTTGTCCGGAGAAAAAGTATC
GAGTcataccacttctatagaaagaaagttcttgtgagtgtttcactaaa
tttgcaatgtttaacaaagtttctctctgtgtcattttaattgtcatgag
acatcttttgGGCatattttatgaataactttttttacaaaaaacaattc
tcaataaagGCTTAGACAAGgcttgatattttatgttctggtttactgCC
TGGTCTCACTAGAGCGTTTTGCCTTCTCAAATCAGAATGCAGTCAACTTG
CTTGCGCTCACATTGCAAACGCCGTAAGGGCCGATCTACACGGCGTGGAG
CCATTCTGAAATTAAAATAGGATAatcctccacttgctagtgaagacgag
gggtaaatcactgaaaaaaatcacgtacacctttttgaaaaatcaaaaac
aaatcaaaaagaaatcaaaaataaaaaagaaatcaaaaatcaaaaagaaa
tcaacaagaaatcaaaaatcaaaaagaaatcagaaatcaaaaagaaatca
aaaagaaatcagaaatcaaaaggaaatcaaaagaaatcaaaaatcaaaaa
gaaatcaaaaagaaatcaaaaagaaatcagaaatcaaaaagaaatcaaaa
agaaataaaaaatcaaaaagaaatcaaaaagaaatcagaaatcaaaaaga
aatcagaaatcaaaaagaaatcaaaaagaaatcaaaaagaaatcaaaatg
aaaatcaaaaaaaaaaatcaaaaataaaaaaaaaatcaaaaaaaaataaa
aaataaaaaggaaatcaaaaagaaatcaaaaagaaatcagaaatcaaaaa
gaaatcaaaaagaaatcagaaatcaaaaggaaatcaaaaagaaatcaaaa
agaaatcaaaaatcaaaaagaaatcaaaaagaaatcaaaaatcaaaaata
aatcaaaatctcgtacacataatttttagtgatttacccctcgagtGAAG
AtacagctttctgttacatgaaaacatgaaaagaagaaaacagacgCAAG
CTCATTATCCAAGAAAAcatgagaagtttttttcgcgttggtgcaatgca
acatgttCCATCCCACCACCACAAGAAAAAAAGcgcgtgtctcatggttt
cttttttggtttcatgggacaaaaagtgagggaaatacccaaaagagacg
ctgattttgtccctgggacaatggagcaaaatcgATTAGTATAAATCTTG
CTCCATTGTCCgaagcacaaatgttattaaataaaaaataggGTGGAGAC
acaagaaagcgtttcaggttggtgagATGGAGCATATTGCAATGCACCAA
CACGAAAAaatcgtgtccccaagccttaactttaacgtcatcaaattctt
tttaatcataatgactctgttgtaaaaacaattattgtcaTTAGGGaagc
catccaggatcctgccattctatcagccagcaaaaactaaatgacatttg
taaacttaagtttcttaccattttccatcgaaaacaatcgaaaacattAC
ACTACTCTCCAAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCGAGTTT
GTTGCTGCGCGAGTTACTTTTACtagttatttttctattgtctataggtg
cgaaaaaaggactgggacggttttagtgggataaagcgaaCATAAAacat
gcccgcgcggcaattggcggctacagtcgaaaaggtgcaTTAGCTTAAAA
CCTTGGCTAAACTTAAATACACGTAACTTATATCTCTGTTTAAAAAAGTG
CTTTATACTAACAAACTAGGGAGAAATTTACTTCTATAACAAGTAAAAAC
GGGTGACGATTAAAGTTATCATTCTAAATTCTTTTATTCAGAGGTTGTTG
CCATGACATTGACGATCGCTGCTCTAATCCCTGCAATCCAATTCTGGTTA
CGACTTGCCACCTTCCTTCATGGACCTCTAAAATCATTTCTACTTCATGT
ACTCCATAACCTCTCAAATGACCCTACATACAATGGTCTACCTCAAGACC
CTCAAAAACTATATCAAGCACTCTCGACAGATGCCAATCATCAAAAGAAG
ATAAAGAAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010082XLOC_010082Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017986-exon-sc0000282-1491911889:253639..253802TCONS_00017986-exon-sc0000282-1491911889:253639..253802Clytia hemisphaericaexon
TCONS_00017986-exon-sc0000282-1510915933:253639..253802TCONS_00017986-exon-sc0000282-1510915933:253639..253802Clytia hemisphaericaexon
TCONS_00017986-exon-sc0000282-1575043694:253639..253802TCONS_00017986-exon-sc0000282-1575043694:253639..253802Clytia hemisphaericaexon
TCONS_00017986-exon-sc0000282-1491911889:265630..265850TCONS_00017986-exon-sc0000282-1491911889:265630..265850Clytia hemisphaericaexon
TCONS_00017986-exon-sc0000282-1510915933:265630..265850TCONS_00017986-exon-sc0000282-1510915933:265630..265850Clytia hemisphaericaexon
TCONS_00017986-exon-sc0000282-1575043694:265630..265850TCONS_00017986-exon-sc0000282-1575043694:265630..265850Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000282supercontigsc0000282:253639..265850 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.19657	0.228237	0	0.543679	0.429622	1.07088	2.87185	3.2705	3.21274	7.44435	2.06213	11.3232	12.1015	13.2905	14.7561	6.04067	6.71245	8.02183	8.79479	5.92333	6.94165	2.09397	3.10553	2.88647	2.65798	10.7136	9.56772	10.9856	6.8645
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017986 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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