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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017992 ID=TCONS_00017992|Name=TCONS_00017992|organism=Clytia hemisphaerica|type=transcript|length=2021bp
GAAACTTTCGTCCACAGCaactttcaaacaaaaacattcattATGACGTC
AACATTTTTATACATTTGGAATAAATTTTCGTGGTCAGACGATTAAAAAA
TTTTACGCGGCGTATTGAGTTTATGTAGAATAGATTTCTTTTAGTAAGTT
AGTCCCCGTTTCccctttcagaaaaaaacaaccaatgaGAACGGACTAAA
ATTCACATGGACCAATCAGAATGTCGAGTCACTTCCAAAAATAGAACCAT
TACTCACACACCTTCAAATACAAGGGATCTTTGAAAGGAGCTACATTCGA
GAAGAGAAGAGAAAAGCATAAAAAGTTGACAGAGAAGTCTTGAAAGAAGC
ATTTATAAAATATCATCAAACGAGAGAAAACTCGACAAGAAACACAACAA
AATATTATAAACTTGAATAACTTTGTTTACTTGTTATGTCCCAAGTGGCT
TTCCTCGATAGATCGTTGGTTATGAGCCAGAACTATaacaaatcaaattt
gaaattagaTCTCAATGAGGGAGCTGGCAACTCGAGGAAGAGATCGTTTT
TAAATGTTGCTGCCTCGCCAGCAATCCTTGCTTCTCCTGATTTGAAACTA
TTGAAGCTTGGAAGTCCAGAACTTGAGAAACTTATTATAAATACTGGAGG
ATTTATTCCAACACCGACTCCAAATGGACTATCGTTTGCAGCAGCAAATG
CTCACAATGAGCATGGAACTGAAgatcaagaaagttttttagCCCGCGGC
TTCATTGAAGCTTTACAAAGGCTACAACAACAAGATGGCCCAGGAACTAC
TTCAGCACCAACAACCAAACAATGGACAGTTCCTTCAGTTCAAGTTACAA
ATGAATCGATAAGCACATCATCAAAAGTTGAGACTAGCAGATGGCCAGGA
CAACCTCAAAGTAATTCAGTTTCTGTGATAACACCAACAAACCCTAACAC
ACCAAGATTACCTGAAATTACAGCACCTTCTACCGTAAATTTACCAATTT
CATCAACTGGAACAGTCAGTACAATGGGTATGACAGCTATTCCACGTAAT
TCAACATCTTATGTTACGAGACCTACAGAACTTTCGAATCCTACTTCATN
TATTTTTAAGCGGCGTATTGAGTTTATGTAGAATAGATTTCTTTTAGTAA
GTTAGTCCCCGTTTCccctttcagaaaaaaacaaccaatgaGAACGGACT
AAAATTCACATGGACCAATCAGAATGTCGAGTCACTTCCAAAAATAGAAC
CATTACTCACACACCTTCAAATACAAGGGATCTTTGAAAGGAGCTACATT
CGAGAAGAGAAGAGAAAAGCATAAAAAGTTGACAGAGAAGTCTTGAAAGA
AGCATTTATAAAATATCATCAAACGAGAGAAAACTCGACAAGAAACACAA
CAAAATATTATAAACTTGAATAACTTTGTTTACTTGTTATGTCCCAAGTG
GCTTTCCTCGATCGATCGTTGGTTATGAGCCAGAACTATaacaaatcaaa
tttgaaattagaTCTCAATGAGGGAGCTGGCAACTCGAGGAAGAGATCGT
TTTTANTGTAACTGAATAACACATGAGATTTTTCAGATGTGTAATTTTTG
AAAGGCcttattttgatatattttatcAAGGGATTGAAAATTCCCTTCAC
CTATNACTTGGAAGTCCAGAACTTGAGAAACTTATTATAAATACTGGAGG
ATTTATTCCAACACCGACTCCAAACGGACTATCGTTTGCAGCAGCAAATG
CTCACAATGAGCATGGAACTGAAgatcaagaaagttttttagCCCGCGGC
TTCATTGAAGCTTTACANTATTTTAGGATttaagaaattatattgttaag
tttttttgacaaattataAAACTAGCTAATAAACAATaacatataaaaat
gaaaacaaattttttgtctCGTTTGTTTTCCACAGATCCTTTACTTCAAT
ATTTAAGCTAAGCTAAATCTATTTCTTTACTTCATGAAAAATTCAGGGAT
TTTCTTATATAAATGTAAAAC Run BLAST on NCBI protein sequence of TCONS_00017992-protein >TCONS_00017992-protein ID=TCONS_00017992-protein|Name=TCONS_00017992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MSQVAFLDRSLVMSQNYNKSNLKLDLNEGAGNSRKRSFLNVAASPAILAS
PDLKLLKLGSPELEKLIINTGGFIPTPTPNGLSFAAANAHNEHGTEDQES
FLARGFIEALQRLQQQDGPGTTSAPTTKQWTVPSVQVTNESISTSSKVET
SRWPGQPQSNSVSVITPTNPNTPRLPEITAPSTVNLPISSTGTVSTMGMT
AIPRNSTSYVTRPTELSNPTSXIFKRRIEFM Run BLAST on NCBI transcript from alignment at sc0000282:4258..6278- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017992 ID=TCONS_00017992|Name=TCONS_00017992|organism=Clytia hemisphaerica|type=transcript|length=2021bp|location=Sequence derived from alignment at sc0000282:4258..6278- (Clytia hemisphaerica)
GAAACTTTCGTCCACAGCAACTTTCAAACAAAAACATTCATTATGACGTC
AACATTTTTATACATTTGGAATAAATTTTCGTGGTCAGACGATTAAAAAA
TTTTACGCGGCGTATTGAGTTTATGTAGAATAGATTTCTTTTAGTAAGTT
AGTCCCCGTTTCCCCTTTCAGAAAAAAACAACCAATGAGAACGGACTAAA
ATTCACATGGACCAATCAGAATGTCGAGTCACTTCCAAAAATAGAACCAT
TACTCACACACCTTCAAATACAAGGGATCTTTGAAAGGAGCTACATTCGA
GAAGAGAAGAGAAAAGCATAAAAAGTTGACAGAGAAGTCTTGAAAGAAGC
ATTTATAAAATATCATCAAACGAGAGAAAACTCGACAAGAAACACAACAA
AATATTATAAACTTGAATAACTTTGTTTACTTGTTATGTCCCAAGTGGCT
TTCCTCGATAGATCGTTGGTTATGAGCCAGAACTATAACAAATCAAATTT
GAAATTAGATCTCAATGAGGGAGCTGGCAACTCGAGGAAGAGATCGTTTT
TAAATGTTGCTGCCTCGCCAGCAATCCTTGCTTCTCCTGATTTGAAACTA
TTGAAGCTTGGAAGTCCAGAACTTGAGAAACTTATTATAAATACTGGAGG
ATTTATTCCAACACCGACTCCAAATGGACTATCGTTTGCAGCAGCAAATG
CTCACAATGAGCATGGAACTGAAGATCAAGAAAGTTTTTTAGCCCGCGGC
TTCATTGAAGCTTTACAAAGGCTACAACAACAAGATGGCCCAGGAACTAC
TTCAGCACCAACAACCAAACAATGGACAGTTCCTTCAGTTCAAGTTACAA
ATGAATCGATAAGCACATCATCAAAAGTTGAGACTAGCAGATGGCCAGGA
CAACCTCAAAGTAATTCAGTTTCTGTGATAACACCAACAAACCCTAACAC
ACCAAGATTACCTGAAATTACAGCACCTTCTACCGTAAATTTACCAATTT
CATCAACTGGAACAGTCAGTACAATGGGTATGACAGCTATTCCACGTAAT
TCAACATCTTATGTTACGAGACCTACAGAACTTTCGAATCCTACTTCATN
TATTTTTAAGCGGCGTATTGAGTTTATGTAGAATAGATTTCTTTTAGTAA
GTTAGTCCCCGTTTCCCCTTTCAGAAAAAAACAACCAATGAGAACGGACT
AAAATTCACATGGACCAATCAGAATGTCGAGTCACTTCCAAAAATAGAAC
CATTACTCACACACCTTCAAATACAAGGGATCTTTGAAAGGAGCTACATT
CGAGAAGAGAAGAGAAAAGCATAAAAAGTTGACAGAGAAGTCTTGAAAGA
AGCATTTATAAAATATCATCAAACGAGAGAAAACTCGACAAGAAACACAA
CAAAATATTATAAACTTGAATAACTTTGTTTACTTGTTATGTCCCAAGTG
GCTTTCCTCGATCGATCGTTGGTTATGAGCCAGAACTATAACAAATCAAA
TTTGAAATTAGATCTCAATGAGGGAGCTGGCAACTCGAGGAAGAGATCGT
TTTTANTGTAACTGAATAACACATGAGATTTTTCAGATGTGTAATTTTTG
AAAGGCCTTATTTTGATATATTTTATCAAGGGATTGAAAATTCCCTTCAC
CTATNACTTGGAAGTCCAGAACTTGAGAAACTTATTATAAATACTGGAGG
ATTTATTCCAACACCGACTCCAAACGGACTATCGTTTGCAGCAGCAAATG
CTCACAATGAGCATGGAACTGAAGATCAAGAAAGTTTTTTAGCCCGCGGC
TTCATTGAAGCTTTACANTATTTTAGGATTTAAGAAATTATATTGTTAAG
TTTTTTTGACAAATTATAAAACTAGCTAATAAACAATAACATATAAAAAT
GAAAACAAATTTTTTGTCTCGTTTGTTTTCCACAGATCCTTTACTTCAAT
ATTTAAGCTAAGCTAAATCTATTTCTTTACTTCATGAAAAATTCAGGGAT
TTTCTTATATAAATGTAAAAC Coding sequence (CDS) from alignment at sc0000282:4258..6278- >TCONS_00017992 ID=TCONS_00017992|Name=TCONS_00017992|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0000282:4258..6278- (Clytia hemisphaerica)
ATGTCCCAAGTGGCTTTCCTCGATAGATCGTTGGTTATGAGCCAGAACTA
TAACAAATCAAATTTGAAATTAGATCTCAATGAGGGAGCTGGCAACTCGA
GGAAGAGATCGTTTTTAAATGTTGCTGCCTCGCCAGCAATCCTTGCTTCT
CCTGATTTGAAACTATTGAAGCTTGGAAGTCCAGAACTTGAGAAACTTAT
TATAAATACTGGAGGATTTATTCCAACACCGACTCCAAATGGACTATCGT
TTGCAGCAGCAAATGCTCACAATGAGCATGGAACTGAAGATCAAGAAAGT
TTTTTAGCCCGCGGCTTCATTGAAGCTTTACAAAGGCTACAACAACAAGA
TGGCCCAGGAACTACTTCAGCACCAACAACCAAACAATGGACAGTTCCTT
CAGTTCAAGTTACAAATGAATCGATAAGCACATCATCAAAAGTTGAGACT
AGCAGATGGCCAGGACAACCTCAAAGTAATTCAGTTTCTGTGATAACACC
AACAAACCCTAACACACCAAGATTACCTGAAATTACAGCACCTTCTACCG
TAAATTTACCAATTTCATCAACTGGAACAGTCAGTACAATGGGTATGACA
GCTATTCCACGTAATTCAACATCTTATGTTACGAGACCTACAGAACTTTC
GAATCCTACTTCATNTATTTTTAAGCGGCGTATTGAGTTTATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017992-exon-sc0000282-1575043694:4258..6278 | TCONS_00017992-exon-sc0000282-1575043694:4258..6278 | Clytia hemisphaerica | exon |
| TCONS_00017992-exon-sc0000282-1510915933:4258..6278 | TCONS_00017992-exon-sc0000282-1510915933:4258..6278 | Clytia hemisphaerica | exon |
| TCONS_00017992-exon-sc0000282-1491911889:4258..6278 | TCONS_00017992-exon-sc0000282-1491911889:4258..6278 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000282 | supercontig | sc0000282:4258..6278 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR005643 | JNK |
Blast
The following BLAST results are available for this feature:
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