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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018014 ID=TCONS_00018014|Name=TCONS_00018014|organism=Clytia hemisphaerica|type=transcript|length=1615bp
AGtaaacaaaatgtcaaaatgttATGTATGCAAAAAAGAAGTAGCAAAGC
GTTGCACTGGCTGTTTGACTATTTCATATTGTTCCAGAGAGTGTCAAACA
CAAGATTGGAAATACCATCGTCATTCATGCAAGATACAACCCAAAAATGT
GATCGACAGACTGCTCTTTTTTAATGACACCTTTTTGCATATTTAcacaa
aaataattgaaaaacttGACGGTCAGGCTTTTCATGCGATGAGATGTGTG
AACAGGCGTTGGAGAGATCTAATTCAAACATTGTGGCAATCAAAGAAAGA
CAAGAAAAATTTTGTAGATATGTTGAAGAAAAAATGGATTAGTGGATCTG
CACGTGTCAATCAAATGTATTGGGGCAACAATGGCTTTGGTTGTAGCTTA
GTCTTGGACAAAGGTGATCTTTTTGTAAGTATGGAGGCTATTCATCGTAT
GTCGTTTCTAGCTATCGATACCAATGTGGAGAATtacccaaaaatcaaaa
gcttTGTACCAAAAGATATTGACAAAGGTGTTATATTTGACGTTAACAaa
cttttctttgtaatttatgTTGAGAAAAAGTTACTTTGTTTTGAtcgaaa
aactttgaaagagATACCTAATGCTTGTGAGGATTTACAAATTGGTAAAC
ACAGTGAAGGTGTTCAAGATTGGAgtgttttcaaagtaaaaaagcaTTTA
GATCGACCTGTTCGAATCAAGTTGTTTGATGAGTATGGCCTCATCCTGTA
CAACAGCGGTTTGGTGATCAAATTTCGTCACAGCTATTGGGACTACGAGG
ACTATTCAAATCTTTTCAGTGGTAAATATGTAAAACAAGTCCCCTTTCAA
ATTGTGGATCATTTTGACACATTGAAACCTTGGTCACGTCAGATATCAGT
ATTGGCAAGAGTGCATTTTACATTCCAAGCCGAGACTGGCAGTAAACACC
ACATGGAAGGCTTTACTACAGCCTATGTCTTCAACGCTACCGAGATTGTC
TGTTTTAATTTGGAATTCGATCAAATGCAAGATAGTTTGTCAGATACCAA
AatgcttttaaatgtttatgaGAAAGATGGTGGCTTTGGTTCAACTGATG
ATCATGTTATGTTGACGCGAGAAAAGGATGCAGTCATGGATGAGCGAGAA
GATTATTTGGAATCTCCCGACAAACTGGAATACTCAGATGATGAAGacga
tgatgaagatgaaggTGAAGAATACGGTAACAAAGggaaatatttccaaa
tttggTTACCAGAGTATAATTCAACTGAAGCTAAACCAACTATTCGATTA
CCAGGGATTCAATGTGCTGCAATGAATGAATATTGTGTTGCTTTGTCTGC
TTCACGAAATAGACGATCACATTGTATTTATTTGTACAGTACTGAAAGAC
TCATGAATGAGGATACTCTGTGGCAAGTTGTACCGTGTTTAAAGAAGTTT
CCTGTCCAGTATGAATGTTCCAACTTATTGATGAGTAAGGAGAAAATGAT
TTCATGTCAATGGTATGAGGATCTTAGCAATGTTTACAGTTGGGATTTTG
ACGAGGAAGATAATGAATACATTCGCTTGtggccaagaaaaaaagttaaa
gaaaggaAAGACAAC Run BLAST on NCBI protein sequence of TCONS_00018014-protein >TCONS_00018014-protein ID=TCONS_00018014-protein|Name=TCONS_00018014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=538bp
VNKMSKCYVCKKEVAKRCTGCLTISYCSRECQTQDWKYHRHSCKIQPKNV
IDRLLFFNDTFLHIYTKIIEKLDGQAFHAMRCVNRRWRDLIQTLWQSKKD
KKNFVDMLKKKWISGSARVNQMYWGNNGFGCSLVLDKGDLFVSMEAIHRM
SFLAIDTNVENYPKIKSFVPKDIDKGVIFDVNKLFFVIYVEKKLLCFDRK
TLKEIPNACEDLQIGKHSEGVQDWSVFKVKKHLDRPVRIKLFDEYGLILY
NSGLVIKFRHSYWDYEDYSNLFSGKYVKQVPFQIVDHFDTLKPWSRQISV
LARVHFTFQAETGSKHHMEGFTTAYVFNATEIVCFNLEFDQMQDSLSDTK
MLLNVYEKDGGFGSTDDHVMLTREKDAVMDEREDYLESPDKLEYSDDEDD
DEDEGEEYGNKGKYFQIWLPEYNSTEAKPTIRLPGIQCAAMNEYCVALSA
SRNRRSHCIYLYSTERLMNEDTLWQVVPCLKKFPVQYECSNLLMSKEKMI
SCQWYEDLSNVYSWDFDEEDNEYIRLWPRKKVKERKDN Run BLAST on NCBI transcript from alignment at sc0000282:236183..240345- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018014 ID=TCONS_00018014|Name=TCONS_00018014|organism=Clytia hemisphaerica|type=transcript|length=4163bp|location=Sequence derived from alignment at sc0000282:236183..240345- (Clytia hemisphaerica)
AGTAAACAAAATGTCAAAATGTTATGTATGCAAAAAAGAAGTAGCAAAGC
GTTGCACTGGCTGTTTGACTATTTCATATTGTTCCAGAGAGTGTCAAACA
CAAGATTGGAAATACCATCGTCATTCATGCAAGATACAACCCAAAAATGT
GATCGACAGACTGCTCTTTTTTAATGACACCTTTTTGCATATTTACACAA
AAATAATTGAAAAACTTGACGGTCAGGCTTTTCATGCGATGAGATGTGTG
AACAGGCGTTGGAGAGATCTAATTCAAACATTGTGGCAATCAAAGAAAGA
CAAGAAAAATTTTGTAGATATGTTGAAGAAAAAATGGATTAGTGGATCTG
CACGTGTCAATCAAATGTATTGGGGCAACAATGGCTTTGGTTGTAGCTTA
GTCTTGGACAAAGGTGATCTTTTTGTAAGTATGGAGGCTATTCATCGTAT
GTCGTTTCTAGCTATCGATACCAATGTGGAGAATTACCCAAAAATCAAAA
GCTTTGTACCAAAAGATATTGACAAAGGTGTTATATTTGACGTTAACAAA
CTTTTCTTTGTAATTTATGTTGAGAAAAAGTTACTTTGTTTTGATCGAAA
AACTTTGAAAGAGATACCTAATGCTTGTGAGGATTTACAAATTGGTAAAC
ACAGTGAAGGTGTTCAAGATTGGAGTGTTTTCAAAGTAAAAAAGCATTTA
GATCGACCTGTTCGAATCAAGTTGTTTGATGAGTATGGCCTCATCCTGTA
CAACAGCGGTTTGGTGATCAAATTTCGTCACAGCTATTGGGACTACGAGG
ACTATTCAAATCTTTTCAGTGGTAAATATGTAAAACAAGTCCCCTTTCAA
ATTGTGGATCATTTTGACACATTGAAACCTTGGTCACGTCAGATATCAGT
ATTGGCAAGAGTGCATTTTACATTCCAAGCCGAGACTGGCAGTAAACACC
ACATGGAAGGCTTTACTACAGCCTATGTCTTCAACGCTACCGAGATTGTC
TGTTTTAATTTGGAATTCGATCAAATGCAAGATAGTTTGTCAGATACCAA
AATGCTTTTAAATGTTTATGAGAAAGATGGTGGCTTTGGTTCAACTGATG
ATCATGTTATGTTGACGCGAGAAAAGGATGCAGTCATGGATGAGCGAGAA
GATTATTTGGAATCTCCCGACAAACTGGAATACTCAGATGATGAAGACGA
TGATGAAGATGAAGGTGAAGAATACGGTAACAAAGGGAAATATTTCCAAA
TTTGGTTACCAGAGTATAATTCAACTGAAGCTAAACCAACTATTCGATTA
CCAGGGATTCAATGTGCTGCAATGAATGAATATTGTGTTGCTTTGTCTGC
TTCACGAAATAGACGATCACATTGTATTTATTTGTACAGTACTGAAAGAC
TCATGAATGAGGATACTCTGTGGCAAGTTGTACCGTGTTTAAAGAAGTTT
CCTGTCCAGTATGAATGTTCCAACTTATTGATGAGTAAGGAGAAAATGAT
TTCATGTCAATGGTATGAGGATCTTAGCAATGTTTACAGTTGGGATTTTG
ACGAGGAAGATAATGAATACATTCGCTTGGTTGAGTATAACTTTTGGTTC
TAAATTTTTTATGGGTACTCTTAGGTGCCAAATAAACGGGGAGGGGGGTT
CGAATAAACAGGGGGGGGTTGGAAAATTTTCGAAATTTTGATAAACGTGG
GGGACGTCTAATTGCCGGGGGGGGGGGAGGTTGGGAATTGTACTTCTGAA
AACCCAAAAATATAAGGTAAATATAGGCTAAAATCAGGCTTGTTGGAGCA
AAATAAGGGGACTTCTTTTTGCCAGCTCAAAATATTCTTTAAAATTAATA
AAAGGGGGGGTCCTAATAAGGTCGGGGGAGGGAGGAAATTTTTTGAAAAA
TTAACAAGCCGGGGCCGGGGGGGGTGTTTATTTGGCACCTAAGAGTACAA
CTTGTTGAACACTTTTTGTTAACCAAAGAACAGTAAACTGATTTTGTTTC
CATATCATTTCAATTTTTCTTTTGTCTTTCTTGTCCTTTGCGTTATGATT
CCATCGAATCATTTTAAACCTTTTAAAAGGATACATACACTACACAATAT
AATGTCAGGCAATATATTGACAATATTTTGCTGAGTGTCCACAATATATT
ATTAGCTCGATTTGCAGTATTCCAACATTTTTTTGTGATTTTGATAAAAC
AGGATAAAATCCTTTTTTATAATACTTTTTGTTTACTTGTTACATTACAG
TCCGCAAACCATATTATGTTTGAAAACTATACACACCAATTTTTTGTGTT
TATTGTGTTAAATATTCTCTACACCCCTGTCTCACAGCCCCGGTGGAACT
TTTTCCTTAGTTGTGATAAAAATTCTCCTTGAAACCCCGATGGGGATGGA
AGTTCTATTGTTCCGAAATGCAGTGGAAATGGTATTGGAGTACAATTTTT
AAACATTAAATTTCGAATGAGGATGGAATCAAAGTCAATTTCCTAGTATG
GCTAAAATTCTAGGGTGCGAAATTTTCGAGTGGGGCTGGGGTATCTCTGG
TGATCTTCAATATTCAAAACAAGAGCAGTGCGCATATCCCGAAGAGTAGT
AGTTTTACTCTCGAAATGACGCAGCCTACATAAACTATATTTCTATTCTA
TATACCTTATCGGGGAAAACTTCGTCGGGGAAAAGTGACGAAATTTCGGC
CAAGTGACAAATATTTTTCCCCGACGAAAATTTTCCCCGGCCTTAATGCG
TTTACCAAAACCAGCAAGTGACGAATATTTTTCCCTGACGAAAATTTTCC
CCGACGAAAATTTTCCCCGACGAAGTTTTCCCCGATAAGGTACCCTTGTA
CACACTTTTTTCCACTTATACTTCTAAAAGAGAAAGAGAAACAGTGGAGA
TGCTACTTATCCACATAACTCTTGCATTGAAGCGATAAAGTAACGTCAAT
TTGGTTAAAAGCTCTTCGTTCAAATGTTAAAAATAGTTTGCACTCTACCG
CAGAGTGGACATTTGGTAAAGTGTCTCTCTTATAGAATAAAGCTATGGCA
GCAAATTGCTATGTTTCTTTGGAGGAAACCTAAAAGTGCCATGTGCTGAG
AATATTTTGTCCTGTGAATTAATTACCAGCCCCCCTCCCTCAAAGCAACA
AAACGGTCTGTTCTATTAAAGGCTTAGTGGGTGTATTTTTGGTCAAAAAC
ACGGAGTCAGTAATTGTTTAAGTTCTGAAGACGGAACTATGAATGAGTGG
GTTTCTCGGTCAGTGAAGACAGTTTTCTTAAACCAGTTGTATATACTAGA
TAACAACCATTCTGTGATTGATTCAAATTGTTTTCATCCCGTTCTTTTTT
TAGTGGGTAAGTAATGTTTAATAGGTATAAGAGTGATATCGTTTGCTCAC
TCAGCAATTTTTATTTACAAGCTTTTTGATATTGAATTTATACAAATGTG
GAGCAAGATTGGTCAGAAAGAGAAAAAAGAATATTTTTTTGCTTATATCA
GCATGATATAACAATAGGCAGACACTGTCCTGATATGAAATATGCGTCTG
ATATGAAAAGGGAACACTTATGTAAAAATAAAACCTTTAATAACCTAGCT
ACTTCATGCTCGGTGTGTCATTCTTAACTTTTTGCTCTTTTGTAATAGAG
AGATATAATATAAACACCTCAGCAGTTTTTTTGTGTCAGTTTTCAAGAGT
GGCAGGAGATGCTTACTCAAGGTACCGCACCTGATCTCAGACTTCGGTCT
TTAGCTTATCACTTCCTTTTGTGTCTTGTGCATTCCTTTTGTTTTTTACT
TTTTTTATTTCTTTTTTCCAAAATGTATACTGGGTTTTTATTACAAATAG
ACGATATCGGCTTTACATAAAAACTCAGATTGGATCCCCGAGAATTCTCC
ACAATGCTTTGTGCGGAAAAAATTTCACCGTAAACTTTTTTCCGCTCAAA
GTTTTGTGGGCAATTTTCGGAGGTCAAATCTGAGTTTTCACGTTCAGCCG
ATATCGTCTATTGTCATGGTTAGTCGCTAGTTTGTATTTTCTTCAGTGCA
TGTAACTTCACTATATTTCATGAGAATTTTGTTTGTATAGGAACTTCGAA
AATTCTTTTGTTCCTTTTTCTTTTAAGTGGCCAAGAAAAAAAGTTAAAGA
AAGGAAAGACAAC Coding sequence (CDS) from alignment at sc0000282:236183..240345- >TCONS_00018014 ID=TCONS_00018014|Name=TCONS_00018014|organism=Clytia hemisphaerica|type=CDS|length=3228bp|location=Sequence derived from alignment at sc0000282:236183..240345- (Clytia hemisphaerica)
TGGCCAAGAAAAAAAGTTAAAGAAAGGAAAGACAACGTAAACAAAATGTC
AAAATGTTATGTATGCAAAAAAGAAGTAGCAAAGCGTTGCACTGGCTGTT
TGACTATTTCATATTGTTCCAGAGAGTGTCAAACACAAGATTGGAAATAC
CATCGTCATTCATGCAAGATACAACCCAAAAATGTGATCGACAGACTGCT
CTTTTTTAATGACACCTTTTTGCATATTTACACAAAAATAATTGAAAAAC
TTGACGGTCAGGCTTTTCATGCGATGAGATGTGTGAACAGGCGTTGGAGA
GATCTAATTCAAACATTGTGGCAATCAAAGAAAGACAAGAAAAATTTTGT
AGATATGTTGAAGAAAAAATGGATTAGTGGATCTGCACGTGTCAATCAAA
TGTATTGGGGCAACAATGGCTTTGGTTGTAGCTTAGTCTTGGACAAAGGT
GATCTTTTTGTAAGTATGGAGGCTATTCATCGTATGTCGTTTCTAGCTAT
CGATACCAATGTGGAGAATTACCCAAAAATCAAAAGCTTTGTACCAAAAG
ATATTGACAAAGGTGTTATATTTGACGTTAACAAACTTTTCTTTGTAATT
TATGTTGAGAAAAAGTTACTTTGTTTTGATCGAAAAACTTTGAAAGAGAT
ACCTAATGCTTGTGAGGATTTACAAATTGGTAAACACAGTGAAGGTGTTC
AAGATTGGAGTGTTTTCAAAGTAAAAAAGCATTTAGATCGACCTGTTCGA
ATCAAGTTGTTTGATGAGTATGGCCTCATCCTGTACAACAGCGGTTTGGT
GATCAAATTTCGTCACAGCTATTGGGACTACGAGGACTATTCAAATCTTT
TCAGTGGTAAATATGTAAAACAAGTCCCCTTTCAAATTGTGGATCATTTT
GACACATTGAAACCTTGGTCACGTCAGATATCAGTATTGGCAAGAGTGCA
TTTTACATTCCAAGCCGAGACTGGCAGTAAACACCACATGGAAGGCTTTA
CTACAGCCTATGTCTTCAACGCTACCGAGATTGTCTGTTTTAATTTGGAA
TTCGATCAAATGCAAGATAGTTTGTCAGATACCAAAATGCTTTTAAATGT
TTATGAGAAAGATGGTGGCTTTGGTTCAACTGATGATCATGTTATGTTGA
CGCGAGAAAAGGATGCAGTCATGGATGAGCGAGAAGATTATTTGGAATCT
CCCGACAAACTGGAATACTCAGATGATGAAGACGATGATGAAGATGAAGG
TGAAGAATACGGTAACAAAGGGAAATATTTCCAAATTTGGTTACCAGAGT
ATAATTCAACTGAAGCTAAACCAACTATTCGATTACCAGGGATTCAATGT
GCTGCAATGAATGAATATTGTGTTGCTTTGTCTGCTTCACGAAATAGACG
ATCACATTGTATTTATTTGTACAGTACTGAAAGACTCATGAATGAGGATA
CTCTGTGGCAAGTTGTACCGTGTTTAAAGAAGTTTCCTGTCCAGTATGAA
TGTTCCAACTTATTGATGAGTAAGGAGAAAATGATTTCATGTCAATGGTA
TGAGGATCTTAGCAATGTTTACAGTTGGGATTTTGACGAGGAAGATAATG
AATACATTCGCTTGTGGCCAAGAAAAAAAGTTAAAGAAAGGAAAGACAAC
GTAAACAAAATGTCAAAATGTTATGTATGCAAAAAAGAAGTAGCAAAGCG
TTGCACTGGCTGTTTGACTATTTCATATTGTTCCAGAGAGTGTCAAACAC
AAGATTGGAAATACCATCGTCATTCATGCAAGATACAACCCAAAAATGTG
ATCGACAGACTGCTCTTTTTTAATGACACCTTTTTGCATATTTACACAAA
AATAATTGAAAAACTTGACGGTCAGGCTTTTCATGCGATGAGATGTGTGA
ACAGGCGTTGGAGAGATCTAATTCAAACATTGTGGCAATCAAAGAAAGAC
AAGAAAAATTTTGTAGATATGTTGAAGAAAAAATGGATTAGTGGATCTGC
ACGTGTCAATCAAATGTATTGGGGCAACAATGGCTTTGGTTGTAGCTTAG
TCTTGGACAAAGGTGATCTTTTTGTAAGTATGGAGGCTATTCATCGTATG
TCGTTTCTAGCTATCGATACCAATGTGGAGAATTACCCAAAAATCAAAAG
CTTTGTACCAAAAGATATTGACAAAGGTGTTATATTTGACGTTAACAAAC
TTTTCTTTGTAATTTATGTTGAGAAAAAGTTACTTTGTTTTGATCGAAAA
ACTTTGAAAGAGATACCTAATGCTTGTGAGGATTTACAAATTGGTAAACA
CAGTGAAGGTGTTCAAGATTGGAGTGTTTTCAAAGTAAAAAAGCATTTAG
ATCGACCTGTTCGAATCAAGTTGTTTGATGAGTATGGCCTCATCCTGTAC
AACAGCGGTTTGGTGATCAAATTTCGTCACAGCTATTGGGACTACGAGGA
CTATTCAAATCTTTTCAGTGGTAAATATGTAAAACAAGTCCCCTTTCAAA
TTGTGGATCATTTTGACACATTGAAACCTTGGTCACGTCAGATATCAGTA
TTGGCAAGAGTGCATTTTACATTCCAAGCCGAGACTGGCAGTAAACACCA
CATGGAAGGCTTTACTACAGCCTATGTCTTCAACGCTACCGAGATTGTCT
GTTTTAATTTGGAATTCGATCAAATGCAAGATAGTTTGTCAGATACCAAA
ATGCTTTTAAATGTTTATGAGAAAGATGGTGGCTTTGGTTCAACTGATGA
TCATGTTATGTTGACGCGAGAAAAGGATGCAGTCATGGATGAGCGAGAAG
ATTATTTGGAATCTCCCGACAAACTGGAATACTCAGATGATGAAGACGAT
GATGAAGATGAAGGTGAAGAATACGGTAACAAAGGGAAATATTTCCAAAT
TTGGTTACCAGAGTATAATTCAACTGAAGCTAAACCAACTATTCGATTAC
CAGGGATTCAATGTGCTGCAATGAATGAATATTGTGTTGCTTTGTCTGCT
TCACGAAATAGACGATCACATTGTATTTATTTGTACAGTACTGAAAGACT
CATGAATGAGGATACTCTGTGGCAAGTTGTACCGTGTTTAAAGAAGTTTC
CTGTCCAGTATGAATGTTCCAACTTATTGATGAGTAAGGAGAAAATGATT
TCATGTCAATGGTATGAGGATCTTAGCAATGTTTACAGTTGGGATTTTGA
CGAGGAAGATAATGAATACATTCGCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018014-exon-sc0000282-1575043694:238767..240345 | TCONS_00018014-exon-sc0000282-1575043694:238767..240345 | Clytia hemisphaerica | exon |
| TCONS_00018014-exon-sc0000282-1575043694:236183..236218 | TCONS_00018014-exon-sc0000282-1575043694:236183..236218 | Clytia hemisphaerica | exon |
| TCONS_00018014-exon-sc0000282-1510915933:238767..240345 | TCONS_00018014-exon-sc0000282-1510915933:238767..240345 | Clytia hemisphaerica | exon |
| TCONS_00018014-exon-sc0000282-1510915933:236183..236218 | TCONS_00018014-exon-sc0000282-1510915933:236183..236218 | Clytia hemisphaerica | exon |
| TCONS_00018014-exon-sc0000282-1491911889:238767..240345 | TCONS_00018014-exon-sc0000282-1491911889:238767..240345 | Clytia hemisphaerica | exon |
| TCONS_00018014-exon-sc0000282-1491911889:236183..236218 | TCONS_00018014-exon-sc0000282-1491911889:236183..236218 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000282 | supercontig | sc0000282:236183..240345 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR002893 | Znf_MYND |
Blast
The following BLAST results are available for this feature:
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