TCONS_00018021 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018021
Unique NameTCONS_00018021
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018021 ID=TCONS_00018021|Name=TCONS_00018021|organism=Clytia hemisphaerica|type=transcript|length=410bp
AGCAAATTTCATTGTTGATTTGATCAAATTTGATGACAAGGAAATCGTCC
ATTTCAAACGTCTAACAGCTCGAGGAGATTACACTGTATATAACCCTTTG
TCTTTCGGCTTACCAAGCAAAGTATATCTGGACATGGAATGGCAAAGGTT
TTACGTAATGAGTAATTACGCGTTATATTGTTACGATTTTAACGGTGAAA
AGATCTTCAACGGTAGCATTCGCAATTACGAAGTTGATAAAATGGTTATT
GAGAAAACGATGCAAGTTTCGAACAGAGTCTTCATCACCGCCGTCCGCCA
TACCATCCCAGACCAATTTCCCATGGATACAATTAGACTGATTGAGATCA
GCCGAAACGAAATAAAACTTGGCGATTGCATTAAGCTTTCAAGCAGCAAG
TGTAAATTCA
Run BLAST on NCBI

protein sequence of TCONS_00018021-protein

>TCONS_00018021-protein ID=TCONS_00018021-protein|Name=TCONS_00018021-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
ANFIVDLIKFDDKEIVHFKRLTARGDYTVYNPLSFGLPSKVYLDMEWQRF
YVMSNYALYCYDFNGEKIFNGSIRNYEVDKMVIEKTMQVSNRVFITAVRH
TIPDQFPMDTIRLIEISRNEIKLGDCIKLSSSKCKF
Run BLAST on NCBI

transcript from alignment at sc0000282:348796..351763-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018021 ID=TCONS_00018021|Name=TCONS_00018021|organism=Clytia hemisphaerica|type=transcript|length=2968bp|location=Sequence derived from alignment at sc0000282:348796..351763- (Clytia hemisphaerica)
AGCAAATTTCATTGTTGATTTGATCAAATTTGATGACAAGGAAATCGTCC
ATTTCAAACGTCTAACAGCTCGAGGAGATTACACTGTATATAACCCTTTG
TCTTTCGGCTTACCAAGCAAAGTATATCTGGACATGGAATGGCAAAGGTT
TTACGTAATGAGTAATTACGCGTTATATTGTTACGATTTTAACGGTGAAA
AGATCTTCAACGGTAGCATTCGCAATTACGAAGTAAGAATGATTTATCTT
ATTTTCTTGTGTTTTAAAGCAATTATATTTTAGGCCAGCAATTGATGCTT
TAAAACGTTTTTTGGCTTTTCGTTAAAAAAAACTGTTTGAGAACCATTTC
CACAAAGTTTATGGGTCCAATGCCCAGATATATCTAATATAAAATACCCC
TACATAGCGCTGTAGTCAAGCCACGGTAGTTGAAGCAAAATAATACAACA
GTAGAGTTGACATCAGTACAGTAGACNCGCTGTAGTCAAGCCACGGTAGT
TGAAGCAAAATAATACAGCAGTACAGTAGACCACAGTAGTAGACCACAGT
TCGGTACCGGTAAATTGTTCAATCAGAGCAAAACAACTGACGAGACGAGA
AACTTGATTGATCAAATTGTCCGCATCAAACTGGTCTTCTCATAAAGATA
GTTATTACATTGCTTCGGTGAGGGAAAGAGTAGCTTCATCTATTGTTTTA
TAAAAATATATGTGGTCGAATATCGCCAAAACAGCACTAACCCTCATAAC
GGCTTACCGTCTTAGACGTTAAAAACACCCAAAATCTTAGACAAACAGAA
GGTCATTAACCAGAGCGCGGGGGTCCTGATTACCAATGCTTCCTTTTGAC
CTTAAAATGGTCAATGAAGGAGCCAACGACTAAACATGTGACGTCATTTG
CGTGAAAATCGCAGATGTCTTTTATAGAACACTGAACTAGAGCTTCTCTG
TCCCTGGCTGAAGCAATATAATACAACCTCTCAGTGGACCAAAGTTTCCT
ACCAGCAATTTTTTCAATAAAGACCATTCTCTCGCCTGATCGTTTTCCGT
CATGTCAGTTGTTTGTTCTAATTGAACAAATAGCCGGTACCGAAATGTGG
TCTAACTACTGTAGTGTGCTTTACTCGTTCATTATTTTGCTTCAACTGCT
TAACTTGAGAAAAAACAGAGTGGAACTGTTGTATCTAGTGTTTTATCCGA
GATATCAGAATGTCAGTTACTACTGGGAATGAAAAATTGTTTTAGGAGTT
TAAATTTGATGCCCTTATGGAAGGAAAGAAAGCCACTGATCCAATTTGTG
CATTAGGTTGACAGGTGTTTTAGGTTAGGTGTTTTATCCGAGATTTCAGA
ATGTCAGTTACTACTGGGAATGACAAATTGTTTTAGGAGTTTAAATTGGA
TGCCCTTATGGAAGGGAAGAAAGCCACTGATCCAATTTTTGCATTAGGAT
GACAGGTGTTTTAGGTTAGGTGTTTTATCCGAGATATCAGAATGTCAGTT
ACTACTGGGAATGACAAATTGTTTTAGGAGTTTAAATTGGATGCCCTTAT
GGAAGGGAAGAAAGCCACTGATCCAATTTTTGCATTAGGATGACAGGTGT
TTTAGGTTAGGTGTTTTATCCGAGATATCAGAATGTCAGTTACTACTGGG
AATGACAAATTGTTTTAGGAGTTTAAATTGGATGCCCTTATGGAAGGGAA
GAAAGCCACTGATCCAATTTTTGCATTAGGATGACAGGTGTTTTAGGTTA
GGTGTTTTATCCGAGATATCAGAATGTCAGTTACTACTGGGAATGACAAA
TTGTTTTAGGAGTTTAAATTGGATGCCCTTATGGAAGGGAAGAAAGCCAC
TGATCCAATTTTTGCATTAGGATGACAGGTGTTTTAGGTTAGGTGTTTTA
TCCGAGATATCAGAATGTCAGTTACTACTGGGAATGACAAATTGTTTTAG
GAGTTTAAATTGGATGCCCTTATGGAAGGGAAGAAAGCCACTGATCCAAT
TTTTGCATTAGGATGACAGGTGTTTTAGGTTAGGTGTTTTATCCGAGATA
TCAGAATGTCAGTTACTACTGGGAATGACAAATTGTTTTAGGAGTTTAAA
TTGGATGCCCTTATGGAAGGGAAGAAAGCCACTGATCCAATTTTTGCATT
AGGATGACAGGTGTTTTAGGTTAGGTGTTTTATCCGAGATATCAGAATGT
CAGTTACTACTGGGAATGACAAATTGTTTTAGGAGTTTAAATTGGATGCC
CTTATGGAAGGGAAGAAAGCCACTGATCCAATTTTTGCATTAGGATGACA
GGTGTTTTAGGTTAGGTGTTTTATCCGAGATATCAGAATGTCAGTTACTA
CTGGGAATGACAAATTGTTTTAGGAGTTTAAATTGGATGCCCTTATGGAA
GGGAAGAAAGCCACTGATCCAATTTTTGCATTAGGATGACAGGTGTTTTA
GGTTAGGTGTTTTATCCGAGATATCAGAATGTCAGTTACTACTGGGAATG
ACAAATTGTTTTAGGAGTTTAAATTGGATGCCCTTATGGAAGGGAAGAAA
GCCACTGATCCAATTTTTGCATTAGGATGACAGGTGTTTTAGGTTAGGTG
TTTTATCCGAGATATCAGAATGTCAGTTACTACTGGGAATGACAAATTGT
TTTAGGAGTTTAAATTTGATGCCCTTATGGAAGGGAAGAAAGCCACTGAT
CCAATTTTTGCATTAGGTTGATAAAATGATTATTGAGAAGACGATGCAAG
TTTCGAACAGAGTTTTCATCACTNCCAATTTTTGCATTAGGTTGATAAAA
TGGTTATTGAGAAAACGATGCAAGTTTCGAACAGAGTCTTCATCACCGCC
GTCCGCCATACCATCCCAGACCAATTTCCCATGGATACAATTAGACTGAT
TGAGATCAGCCGAAACGAAATAAAACTTGGCGATTGCATTAAGCTTTCAA
GCAGCAAGTGTAAATTCA

Coding sequence (CDS) from alignment at sc0000282:348796..351763-

>TCONS_00018021 ID=TCONS_00018021|Name=TCONS_00018021|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0000282:348796..351763- (Clytia hemisphaerica)
GTTGATAAAATGGTTATTGAGAAAACGATGCAAGTTTCGAACAGAGTCTT
CATCACCGCCGTCCGCCATACCATCCCAGACCAATTTCCCATGGATACAA
TTAGACTGATTGAGATCAGCCGAAACGAAATAAAACTTGGCGATTGCATT
AAGCTTTCAAGCAGCAAGTGTAAATTCGCAAATTTCATTGTTGATTTGAT
CAAATTTGATGACAAGGAAATCGTCCATTTCAAACGTCTAACAGCTCGAG
GAGATTACACTGTATATAACCCTTTGTCTTTCGGCTTACCAAGCAAAGTA
TATCTGGACATGGAATGGCAAAGGTTTTACGTAATGAGTAATTACGCGTT
ATATTGTTACGATTTTAACGGTGAAAAGATCTTCAACGGTAGCATTCGCA
ATTACGAAGTTGATAAAATGGTTATTGAGAAAACGATGCAAGTTTCGAAC
AGAGTCTTCATCACCGCCGTCCGCCATACCATCCCAGACCAATTTCCCAT
GGATACAATTAGACTGATTGAGATCAGCCGAAACGAAATAAAACTTGGCG
ATTGCATTAAGCTTTCAAGCAGCAAGTGTAAATTCGCAAATTTCATTGTT
GATTTGATCAAATTTGATGACAAGGAAATCGTCCATTTCAAACGTCTAAC
AGCTCGAGGAGATTACACTGTATATAACCCTTTGTCTTTCGGCTTACCAA
GCAAAGTATATCTGGACATGGAATGGCAAAGGTTTTACGTAATGAGTAAT
TACGCGTTATATTGTTACGATTTTAACGGTGAAAAGATCTTCAACGGTAG
CATTCGCAATTACGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010097XLOC_010097Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018021-proteinTCONS_00018021-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018021-exon-sc0000282-1575043694:351532..351763TCONS_00018021-exon-sc0000282-1575043694:351532..351763Clytia hemisphaericaexon
TCONS_00018021-exon-sc0000282-1575043694:348796..348973TCONS_00018021-exon-sc0000282-1575043694:348796..348973Clytia hemisphaericaexon
TCONS_00018021-exon-sc0000282-1510915933:351532..351763TCONS_00018021-exon-sc0000282-1510915933:351532..351763Clytia hemisphaericaexon
TCONS_00018021-exon-sc0000282-1510915933:348796..348973TCONS_00018021-exon-sc0000282-1510915933:348796..348973Clytia hemisphaericaexon
TCONS_00018021-exon-sc0000282-1491911889:351532..351763TCONS_00018021-exon-sc0000282-1491911889:351532..351763Clytia hemisphaericaexon
TCONS_00018021-exon-sc0000282-1491911889:348796..348973TCONS_00018021-exon-sc0000282-1491911889:348796..348973Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000282supercontigsc0000282:348796..351763 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.79886	4.53719	3.9171	4.33898	2.61831	0.673248	2.59682	2.28124	0.925784	0.391806	1.71241	1.02548	0.442351	0.958356	2.10544	1.61139	1.6464	2.09947	0.56289	0.196341	0.214886	1.27334	3.60778	5.27494	4.73767	3.72087	0.726075	0.876751	1.43987	2.07569
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top