TCONS_00018036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018036
Unique NameTCONS_00018036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length872

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018036 ID=TCONS_00018036|Name=TCONS_00018036|organism=Clytia hemisphaerica|type=transcript|length=872bp
GTGTGTCCAGAAATCCGATGAAGAGTTGTTTTTTACGTAGAGTACAAATC
TTGATTATATTTTCACCGTCAAATTTTGTAATATGCTTGCGagtaaactt
aattttttttatcatataaTATATGTTTgttatatataatatatttttac
tattttctaACCTAATTTCTCTAGTTTGAAACCCTTTTGGACCAGTCCGA
AGAAAATTTATAAAaccttttccccccccccccccctgcaacCTTTAGAG
CAGGTCCCAATCCTTCATCAATTTTGGGATGTTCCTTTCTTGGTTTAAGT
ACCAGAGCCTCTTTGTTATTCTATCTGAACTCGTATTAAATTTCTTCGAc
gtttaagaaaataaaaaatatattcaaaatataAAGGCCGTTCTTCATTT
TGTAGTCAGaggttttctgtttgtttgaaAGATAATCAGGAGTGGAATGA
TATCGAATaagacaaaaaataatttagaaaaaagtaaaatgaacACGAAG
AAAATCAGGATTGCGGTGCTtcaaaaataggaaaaagaaaaatttttaat
agGCTTGTATATATTAAACTATAATTTTTATCCTGTTTTCTAGCCAAATT
TCtctagtttttaatttttcaacccTGAGATCATCTTCGCACGTAACGGT
TCCGTTACACTCCAAACGAAACGaagtcattctattggttaaattcaagt
tttacgtcacttctaaccaatagaatggcttcatttcgtttcggagcgaa
acggaatcgtagcgtgtgaacatggtctaaaacaTTCTTCATTTGCCTTT
ACCATACCAAGAAACAACTCTGGTAATTTTGCCATTTGACGCAACTCCGC
ATCCAACATATTGATTGTCAGT
Run BLAST on NCBI

transcript from alignment at sc0000282:336471..337342

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018036 ID=TCONS_00018036|Name=TCONS_00018036|organism=Clytia hemisphaerica|type=transcript|length=872bp|location=Sequence derived from alignment at sc0000282:336471..337342 (Clytia hemisphaerica)
ACTGACAATCAATATGTTGGATGCGGAGTTGCGTCAAATGGCAAAATTAC
CAGAGTTGTTTCTTGGTATGGTAAAGGCAAATGAAGAAtgttttagacca
tgttcacacgctacgattccgtttcgctccgaaacgaaatgaagccattc
tattggttagaagtgacgtaaaacttgaatttaaccaatagaatgacttC
GTTTCGTTTGGAGTGTAACGGAACCGTTACGTGCGAAGATGATCTCAggg
ttgaaaaattaaaaactagaGAAATTTGGCTAGAAAACAGGATAAAAATT
ATAGTTTAATATATACAAGCctattaaaaatttttctttttcctattttt
gaAGCACCGCAATCCTGATTTTCTTCGTgttcattttacttttttctaaa
ttattttttgtcttATTCGATATCATTCCACTCCTGATTATCTttcaaac
aaacagaaaacctCTGACTACAAAATGAAGAACGGCCTTtatattttgaa
tatattttttattttcttaaacgTCGAAGAAATTTAATACGAGTTCAGAT
AGAATAACAAAGAGGCTCTGGTACTTAAACCAAGAAAGGAACATCCCAAA
ATTGATGAAGGATTGGGACCTGCTCTAAAGgttgcagggggggggggggg
gaaaaggtTTTATAAATTTTCTTCGGACTGGTCCAAAAGGGTTTCAAACT
AGAGAAATTAGGTtagaaaatagtaaaaatatattatatataacAAACAT
ATAttatatgataaaaaaaattaagtttactCGCAAGCATATTACAAAAT
TTGACGGTGAAAATATAATCAAGATTTGTACTCTACGTAAAAAACAACTC
TTCATCGGATTTCTGGACACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010112XLOC_010112Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018036-exon-sc0000282-1491911889:336471..337342TCONS_00018036-exon-sc0000282-1491911889:336471..337342Clytia hemisphaericaexon
TCONS_00018036-exon-sc0000282-1510915933:336471..337342TCONS_00018036-exon-sc0000282-1510915933:336471..337342Clytia hemisphaericaexon
TCONS_00018036-exon-sc0000282-1575043694:336471..337342TCONS_00018036-exon-sc0000282-1575043694:336471..337342Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000282supercontigsc0000282:336471..337342 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.705697	0.733294	0.163383	0.587684	2.08519	0.925113	35.7858	41.5292	48.7807	55.2471	57.8702	16.3282	4.23619	3.87854	7.06046	14.2438	1.71982	0.726721	2.35959	3.83159	0.896852	1.08151	0.88133	0.360278	0.306422	0.208952	0.988684	0.0928026	1.15986	0.304145
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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