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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018043 ID=TCONS_00018043|Name=TCONS_00018043|organism=Clytia hemisphaerica|type=transcript|length=2154bp
ATTTTTTAATATCATAAACTAAAATATCACGCATTAAAGCATTTAATTAC
AACATTTAGCAGGGaatttttgtaaagatttttcaCTTTCTAAGAAAATA
AGTCGAAAAATCAACAGCAATTATATAAAGTGTGGTTTTGTCTGGTTAGA
AAAAATCAGTTTGAAAAAGTGGACAACCGCATCATATCATCTGTTAAAGA
TTTGAATctggaaaaaaacttttgacagAAAAACGAGCAGTCTGTTGAAG
TAGTAAATCAATCATAACATAATCATGGACGGATACAAACTAGCCTCGGT
CCAAATCAacgttttggtgtttttctatGTCGTTATCAAAAGGttcattc
aaatttttcgaaaacatGAGAAACGAACAAAAATGGACAATTGTATATTG
AAACCATTTCCATGTGAAGAAGTGACAAGAATGAAGAAAGAAATTCATGA
AGAACATGCTAAAGCAAGAATGGTGGTCAACTCAATCTCCAGTATCCTGA
TATTTGCAATGTCAATGGAAATCATATTTTGCACAGATCTTATCTCCTAT
CCTTTCATTGGAGTACATCAAAAACTCTACTTCGGTTCAATCTCACTTAT
CAGTGTATGTGTCTTCAACTTAGTGTTAAGCTTAGCAACATACAGAAACA
AAACAGCAATGCTTCATCATCTATGTCGATACATTATTGGTCTAACAGTC
TTGTTGACATCATTATACACAAATGAGATACCTTTATGTTCTGCCATTGC
TATGGTTACCGTTGGAAGTGTATTCACTGATGAAATCAAAGAAGTTCTTA
AACTAAACGAAACCAGAGGGAAATATTTCTCAATCTTCTTATTAGCTCAT
CTCATCATGAATTATTTCTGTCAACTCTTGTTACCTATCATGATCGTAGT
ATTCGCAATGTGGAACACTAAACAAAACTTCTTCACTACTCATACAGTAT
CCatggtaatttttttcatagcatcAGCTTTTATGTTGGCCTACAGCATA
TGGCGACTGAGGAAGCTTACCATGGCTTACAGTAATGAGAAACTAAGAAT
CAACACACGTAAAATAGTTGAACAATACGGCACAGATACAATCAATACTG
CATCAGGATTCACCAACTTGTCATTGGTGACTGACTCCCAAGGAAGACGT
ACTTCAACCATTCCAATACCTTCTACTGCTGAATCACAAAAACTGGAAAC
aataaaagtcattaaaaaggGAGAAGATGATTTTGTGCCTTCTTTTACAT
TCTAAGAACTTtatagttaagctttttctagACAGCGAACATTTTGGAAA
GAAAGACACTCAAAATTACTCAATATTTTGGAGAAGTCTTTTAGATGGAG
CATGATTGGATTTTACTggattttttaaacgactttttTCTTACTGGGAA
tagaacaaaattttcaaaagagtaaTGCAAAGACGAAACTTATAAGATTC
AAAACTTAGGATATACCAAactcaaacaaaatttgtttgctCATAAAGAT
TTTTAACTATTTTGTGTGCGAGAAAGACAAAAATGAGAGGAATTGTGTta
ctttgaaagattttttgatgtCTTATAAAGGTATTGTTGGTTTAGTcgtt
tttttttagatattgtcTACATAGCCAAGTCGAGTCAGGACTTGCAAGTT
TCCTGTCCAGAATATGTCACGACTGTAGTTATTTACTTTAAATGATTGCT
TTCTTACACTGTAAaccatttaaaaacattttcgttTTCATACGAAAGTT
TATTTTAAACCTCCTTGAACGATACGTGTCTTTGATTTATTTGAGCcaat
taaaattttgtttgaagAAAACTAACACCTCAGGCACTTCCACTTTAGAC
CTAAATTTTGTGACCTAGtagtagttttttttaattatgtgGAAAAGAGC
TATCTCTACGTGTCTGACGTTTTGAGGTCATATTTGCATTTTATCAAAGT
ATACGATCAATTTCTGACACTtctgtcaatcaaaatttcaattcataACA
AGACTGGAAGTGTAACAATCTTTACTTTATTCTTATAATCAATTATGTTT
TTTAATACTTTAAATTGtagataatttcaaaattttgtatttcagattat
attttgtattttctttttttaactgtaaattttaGAATATAAAAATCAAG
AATC Run BLAST on NCBI protein sequence of TCONS_00018043-protein >TCONS_00018043-protein ID=TCONS_00018043-protein|Name=TCONS_00018043-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MDGYKLASVQINVLVFFYVVIKRFIQIFRKHEKRTKMDNCILKPFPCEEV
TRMKKEIHEEHAKARMVVNSISSILIFAMSMEIIFCTDLISYPFIGVHQK
LYFGSISLISVCVFNLVLSLATYRNKTAMLHHLCRYIIGLTVLLTSLYTN
EIPLCSAIAMVTVGSVFTDEIKEVLKLNETRGKYFSIFLLAHLIMNYFCQ
LLLPIMIVVFAMWNTKQNFFTTHTVSMVIFFIASAFMLAYSIWRLRKLTM
AYSNEKLRINTRKIVEQYGTDTINTASGFTNLSLVTDSQGRRTSTIPIPS
TAESQKLETIKVIKKGEDDFVPSFTF Run BLAST on NCBI transcript from alignment at sc0000284:133459..136588+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018043 ID=TCONS_00018043|Name=TCONS_00018043|organism=Clytia hemisphaerica|type=transcript|length=3130bp|location=Sequence derived from alignment at sc0000284:133459..136588+ (Clytia hemisphaerica)
ATTTTTTAATATCATAAACTAAAATATCACGCATTAAAGCATTTAATTAC
AACATTTAGCAGGGaatttttgtaaagatttttcaCTTTCTAAGAAAATA
AGTCGAAAAATCAACAGCAATTATATAAAGTGTGGTTTTGTCTGGTTAGA
AAAAATCAGTTTGAAAAAGTGGACAACCGCATCATATCATCTGTTAAAGA
TTTGAATctggaaaaaaacttttgacagAAAAACGAGCAGTCTGTTGAAG
TAGTAAATCAATCATAACATAATCATGGACGGATACAAACTAGCCTCGGT
CCAAATCAacgttttggtgtttttctatGTCGTTATCAAAAGGttcattc
aaatttttcgaaaacatGAGAAACGAACAAAAATGGACAATTGTATATTG
AAACCATTTCCATGTGAAGAAGTGACAAGAATGAAGAAAGAAATTCATGA
AGAACATGCTAAAGCAAGAATGTAAGTAAAATTGACAATACACGATTTTT
TAAGAGCCTCCAAAAGTCTTCCAATGtcctttcaacttttttagttttga
tccttaaaatgttcttatttcacTATTTTGCGAgtgtttttgttcatttt
gttaagtctgaataattttttaacttgttctcgTGTATCCTTATATCTTA
TATAGTCTATTTTCatagaaaaaacgtgtattataaGTTTACTAAAAGAC
AACATTGTGCCGacgtagacgatgctatcgtccgtataatatattattat
aatattatgatataacatagttgtatattataaaacgtaatatgtagCGC
GGCGGAAAATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTATTTTTCGCCCGCGCGGACAAAAT
TTCCGCCCGACTGCTAATTTGCGTGTTTCagattattctttatttttcga
attcgtcttagactatagcatagtctagtgCCAACGTTCCTCTAACGTGT
CTACCCTTTTGAGGGCGGCGGAGTGACCgaaaagatttgaaataatCTAC
AGTTCTGACTTCCAATCTAAATTGAGGaaggtaaaagtgctgatttgcct
aagtcctcagtcagtcaggatctaaAATAATGAAAGCTAAACATATATAT
GCCACAGTAACCACAGTATACATAAAATCGACAATACAAAGACTAAGGTT
GCTTAGACTCTCTAACCCTTTATTACCCAAAATAGCATGGTGGTTTAATA
TTATAAGAATTTTGTACATCGGTACTATAAATGATGTGCAATATatcaaa
tgttttttcattcagcgatccttattctatttttttctatatttcagGGT
GGTCAACTCAATCTCCAGTATCCTGATATTTGCAATGTCAATGGAAATCA
TATTTTGCACAGATCTTATCTCCTATCCTTTCATTGGAGTACATCAAAAA
CTCTACTTCGGTTCAATCTCACTTATCAGTGTATGTGTCTTCAACTTAGT
GTTAAGCTTAGCAACATACAGAAACAAAACAGCAATGCTTCATCATCTAT
GTCGATACATTATTGGTCTAACAGTCTTGTTGACATCATTATACACAAAT
GAGATACCTTTATGTTCTGCCATTGCTATGGTTACCGTTGGAAGTGTATT
CACTGATGAAATCAAAGAAGTTCTTAAACTAAACGAAACCAGAGGGAAAT
ATTTCTCAATCTTCTTATTAGCTCATCTCATCATGAATTATTTCTGTCAA
CTCTTGTTACCTATCATGATCGTAGTATTCGCAATGTGGAACACTAAACA
AAACTTCTTCACTACTCATACAGTATCCatggtaatttttttcatagcat
cAGCTTTTATGTTGGCCTACAGCATATGGCGACTGAGGAAGCTTACCATG
GCTTACAGTAATGAGAAACTAAGAATCAACACACGTAAAATAGTTGAACA
ATACGGCACAGATACAATCAATACTGCATCAGGATTCACCAACTTGTCAT
TGGTGACTGACTCCCAAGGAAGACGTACTTCAACCATTCCAATACCTTCT
ACTGCTGAATCACAAAAACTGGAAACaataaaagtcattaaaaaggGAGA
AGATGATTTTGTGCCTTCTTTTACATTCTAAGAACTTtatagttaagctt
tttctagACAGCGAACATTTTGGAAAGAAAGACACTCAAAATTACTCAAT
ATTTTGGAGAAGTCTTTTAGATGGAGCATGATTGGATTTTACTggatttt
ttaaacgactttttTCTTACTGGGAAtagaacaaaattttcaaaagagta
aTGCAAAGACGAAACTTATAAGATTCAAAACTTAGGATATACCAAactca
aacaaaatttgtttgctCATAAAGATTTTTAACTATTTTGTGTGCGAGAA
AGACAAAAATGAGAGGAATTGTGTtactttgaaagattttttgatgtCTT
ATAAAGGTATTGTTGGTTTAGTcgtttttttttagatattgtcTACATAG
CCAAGTCGAGTCAGGACTTGCAAGTTTCCTGTCCAGAATATGTCACGACT
GTAGTTATTTACTTTAAATGATTGCTTTCTTACACTGTAAaccatttaaa
aacattttcgttTTCATACGAAAGTTTATTTTAAACCTCCTTGAACGATA
CGTGTCTTTGATTTATTTGAGCcaattaaaattttgtttgaagAAAACTA
ACACCTCAGGCACTTCCACTTTAGACCTAAATTTTGTGACCTAGtagtag
ttttttttaattatgtgGAAAAGAGCTATCTCTACGTGTCTGACGTTTTG
AGGTCATATTTGCATTTTATCAAAGTATACGATCAATTTCTGACACTtct
gtcaatcaaaatttcaattcataACAAGACTGGAAGTGTAACAATCTTTA
CTTTATTCTTATAATCAATTATGTTTTTTAATACTTTAAATTGtagataa
tttcaaaattttgtatttcagattatattttgtattttctttttttaact
gtaaattttaGAATATAAAAATCAAGAATC Coding sequence (CDS) from alignment at sc0000284:133459..136588+ >TCONS_00018043 ID=TCONS_00018043|Name=TCONS_00018043|organism=Clytia hemisphaerica|type=CDS|length=1962bp|location=Sequence derived from alignment at sc0000284:133459..136588+ (Clytia hemisphaerica)
ATGGACGGATACAAACTAGCCTCGGTCCAAATCAacgttttggtgttttt
ctatGTCGTTATCAAAAGGttcattcaaatttttcgaaaacatGAGAAAC
GAACAAAAATGGACAATTGTATATTGAAACCATTTCCATGTGAAGAAGTG
ACAAGAATGAAGAAAGAAATTCATGAAGAACATGCTAAAGCAAGAATGGT
GGTCAACTCAATCTCCAGTATCCTGATATTTGCAATGTCAATGGAAATCA
TATTTTGCACAGATCTTATCTCCTATCCTTTCATTGGAGTACATCAAAAA
CTCTACTTCGGTTCAATCTCACTTATCAGTGTATGTGTCTTCAACTTAGT
GTTAAGCTTAGCAACATACAGAAACAAAACAGCAATGCTTCATCATCTAT
GTCGATACATTATTGGTCTAACAGTCTTGTTGACATCATTATACACAAAT
GAGATACCTTTATGTTCTGCCATTGCTATGGTTACCGTTGGAAGTGTATT
CACTGATGAAATCAAAGAAGTTCTTAAACTAAACGAAACCAGAGGGAAAT
ATTTCTCAATCTTCTTATTAGCTCATCTCATCATGAATTATTTCTGTCAA
CTCTTGTTACCTATCATGATCGTAGTATTCGCAATGTGGAACACTAAACA
AAACTTCTTCACTACTCATACAGTATCCatggtaatttttttcatagcat
cAGCTTTTATGTTGGCCTACAGCATATGGCGACTGAGGAAGCTTACCATG
GCTTACAGTAATGAGAAACTAAGAATCAACACACGTAAAATAGTTGAACA
ATACGGCACAGATACAATCAATACTGCATCAGGATTCACCAACTTGTCAT
TGGTGACTGACTCCCAAGGAAGACGTACTTCAACCATTCCAATACCTTCT
ACTGCTGAATCACAAAAACTGGAAACaataaaagtcattaaaaaggGAGA
AGATGATTTTGTGCCTTCTTTTACATTCTAAATGGACGGATACAAACTAG
CCTCGGTCCAAATCAacgttttggtgtttttctatGTCGTTATCAAAAGG
ttcattcaaatttttcgaaaacatGAGAAACGAACAAAAATGGACAATTG
TATATTGAAACCATTTCCATGTGAAGAAGTGACAAGAATGAAGAAAGAAA
TTCATGAAGAACATGCTAAAGCAAGAATGGTGGTCAACTCAATCTCCAGT
ATCCTGATATTTGCAATGTCAATGGAAATCATATTTTGCACAGATCTTAT
CTCCTATCCTTTCATTGGAGTACATCAAAAACTCTACTTCGGTTCAATCT
CACTTATCAGTGTATGTGTCTTCAACTTAGTGTTAAGCTTAGCAACATAC
AGAAACAAAACAGCAATGCTTCATCATCTATGTCGATACATTATTGGTCT
AACAGTCTTGTTGACATCATTATACACAAATGAGATACCTTTATGTTCTG
CCATTGCTATGGTTACCGTTGGAAGTGTATTCACTGATGAAATCAAAGAA
GTTCTTAAACTAAACGAAACCAGAGGGAAATATTTCTCAATCTTCTTATT
AGCTCATCTCATCATGAATTATTTCTGTCAACTCTTGTTACCTATCATGA
TCGTAGTATTCGCAATGTGGAACACTAAACAAAACTTCTTCACTACTCAT
ACAGTATCCatggtaatttttttcatagcatcAGCTTTTATGTTGGCCTA
CAGCATATGGCGACTGAGGAAGCTTACCATGGCTTACAGTAATGAGAAAC
TAAGAATCAACACACGTAAAATAGTTGAACAATACGGCACAGATACAATC
AATACTGCATCAGGATTCACCAACTTGTCATTGGTGACTGACTCCCAAGG
AAGACGTACTTCAACCATTCCAATACCTTCTACTGCTGAATCACAAAAAC
TGGAAACaataaaagtcattaaaaaggGAGAAGATGATTTTGTGCCTTCT
TTTACATTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018043-exon-sc0000284-1491911889:133459..133929 | TCONS_00018043-exon-sc0000284-1491911889:133459..133929 | Clytia hemisphaerica | exon |
| TCONS_00018043-exon-sc0000284-1510915933:133459..133929 | TCONS_00018043-exon-sc0000284-1510915933:133459..133929 | Clytia hemisphaerica | exon |
| TCONS_00018043-exon-sc0000284-1575043694:133459..133929 | TCONS_00018043-exon-sc0000284-1575043694:133459..133929 | Clytia hemisphaerica | exon |
| TCONS_00018043-exon-sc0000284-1491911889:134906..136588 | TCONS_00018043-exon-sc0000284-1491911889:134906..136588 | Clytia hemisphaerica | exon |
| TCONS_00018043-exon-sc0000284-1510915933:134906..136588 | TCONS_00018043-exon-sc0000284-1510915933:134906..136588 | Clytia hemisphaerica | exon |
| TCONS_00018043-exon-sc0000284-1575043694:134906..136588 | TCONS_00018043-exon-sc0000284-1575043694:134906..136588 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000284 | supercontig | sc0000284:133459..136588 + |
Blast
The following BLAST results are available for this feature:
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