TCONS_00018050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018050
Unique NameTCONS_00018050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018050 ID=TCONS_00018050|Name=TCONS_00018050|organism=Clytia hemisphaerica|type=transcript|length=1212bp
CGATCTCGGCAAAAACGAAATGCTAAATGATGAATTCTTGGCAAAATTAA
TTCCAAAAGGTGTTTGTAGTTTCGAAGACCAAAAATGCAATATGGACAAT
TTCACTGAAATTTATTCGACAAAATTTGGTAAATGTCTTGTGTTTCCTCA
AGAAGATAGCCAGCCTTTAATGAGCACTACCCAGGGTGATGGTCTTTCTC
TTTTCCTGAACATTCACGAGGATGAGATGCTGGATAGTCGTTCCATAGCC
AATGGTTTAGTGGTATTCATACATCCCCATGAAGAAACATTCCAATCAGC
TTTATCAAAGAGGATCTTTATTCAACCTGGAACAATAAGTGATATTCATG
TTACTGTCAGCAAGCTTCGATCATTACCAGCACCTTACAAGACCGATTGT
GGAAAGAAGGCACTTCGATTCATTGATGAAAGTTATGGATACTCGGCAAA
TTTGTGTGCAATCGATTGCATTTCTGAAATGTATTATAGTACATGTAAAT
GCTTACCTTCAGAGCTAAAAATGTTTGTTGAAGAAAACATTGAAGAATGC
AGTATGGAAAAATTTGATTGCTTTACAAAAGTTTACAGAGGCATTAATAA
TGGTAGAACGTTTGACAAATGCCAACAAAAATGTCCAGCACCTTGTTACA
TGGAATCGTTCACACTACAAGCTGGACAAATCAAGATTGGTACAAAGTTC
ATGTACGATAAGCTGGCTCTGCTCATGAATATATCGGTAGAGGAAAGCAA
AGATTTTGTCAGTCATAACTTCGTTGGCATAAGAATTGCTTATGGCGATG
TGATGTACACAGAAGAAACACTAACACCCTCTGTTGATTGGAAAACACTT
TTAGcAACGATTGGAGGAAGTCTTGGTTTGTGCCTTGGATGCAGTTTCAT
CACATGTTgcgaatttcttgttttttgtaTCACTTATGCTttattgaagc
gaaaagaaaGTTCGAAAAGTGCTAAGAAAACTGTTGATGTGGTCAcgtga
ttcgaataatagaggctACAATGatgatttttaacaatttctggAGAAAA
TTCCGTATGTGAAAGATGTCAAAGAATTCTTTATTAGAAAGATCACAACA
AGTACATTAacgaaaatatattacaaaataCTACTAACATAGAAAATATC
TCAAATTCATATTGTTAGCATTGTGAACAGTTATTTTAATTGtaagattt
ttaattttgaac
Run BLAST on NCBI

transcript from alignment at sc0000284:169780..176773+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018050 ID=TCONS_00018050|Name=TCONS_00018050|organism=Clytia hemisphaerica|type=transcript|length=6994bp|location=Sequence derived from alignment at sc0000284:169780..176773+ (Clytia hemisphaerica)
CGATCTCGGCAAAAACGAAATGCTAAATGATGAATTCTTGGCAAAATTAA
TTCCAAAAGGTGTTTGTAGTTTCGAAGACCAAAAATGCAATATGGACAAT
TTCACTGAAATTTATTCGACAAAATTTGGTAAATGTCTTGTGTTTCCTCA
AGAAGATAGCCAGCCTTTAATGAGCACTACCCAGGGTGATGGTCTTTCTC
TTTTCCTGAACATTCACGAGGATGAGATGCTGGATAGTCGTTCCATAGCC
AATGGTTTAGTGGTATTCATACATCCCCATGAAGAAACATTCCAATCAGC
TTTATCAAAGAGGATCTTTATTCAACCTGGAACAATAAGTGATATTCATG
TTACTGTCAGCAAGGTATTTCTGTtatgttttgacttttaaacgctcttg
ttttttttatctacGGAGTTGAAAATTATTACTCCAAATAGTTTTCTTTG
CTTGACAAAAGAAAAcctatattttcattttacctTTAAAAGATACGTTG
TCTTTACATTGGTATCGGTTccgttgttttgttttgttttgttttttagg
tgcctaataaacgcccTCCCTTTGTTAATTGTCCGATTTTTGTCCAACNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaatctt
tttttgaaaatttttttaactgtcAAAGAAAAGTCGCTTTTGCTTTAAat
caggggggggtcggtagtaaaatctcagacatatatgagtagtaaaagga
tttttacgaatttttacataccaccacccagactcttggaagagatattt
tttactaccctggtagtaaaagtttttgggacaatttgtcatggagacca
cctattttttggttgcttttcggactgattttgcaaaaaaagctgaaaaa
tgattatttatgtgacacatttttcacgtagtgcaaaaattaatgttttg
cacttagaattaaagtcttttttatattgacaaaaaatttcgagaatttt
ttgtttgcagcaaacaactttccaacagaaaattttttaaaattataaaa
attttcagattttttcagaaaagtcatccaaaaaatttaaagaattacaa
aaatagctaaaatttgctaattttaccagtcttaactacccaggtagtaa
tttttttttcaaatttaacacatagataccacccattttagtatttaact
accctggttagtaaaaaattttttcgatttttcgtcacaccaccaccgta
gtaaacgtcattatgtctgagattttactaccgacccccctgtTTAAATA
GCCTGGGTTTAGAAGTCTATAATTACCGAGCACTTAAATgaattatacgg
tgttatatacacccgactcgtctgaaactgatgtcagcaaaattttaata
aaagagtcctttcaaatttgtaaataaaaggaagaaaaaaatcttgctcc
acatttttcttcattcattacaaaagattctattatttcaatctgctgaa
tcaacatacattataactatgtaaaaggtcaatggctttaaaGAGGTACA
ATTTCAAAAACCCCCGGCAATTAGCCCACCTGGGAGTATAAACAGACTTG
AATTGGATTTTTAAAATTATACCCTCTTTTCTTCCAGCTTCGATCATTAC
CAGCACCTTACAAGACCGATTGTGGAAAGAAGGCACTTCGATTCATTGAT
GAAAGTTATGGATACTCGGCAAATTTGTGTGCAATCGATTGCATTTCTGA
AATGTATTATAGTACATGTAAATGCTTACCTTCAGAGCTAAAAATGTTTG
TTGAAGGTATGACTACTCCTTTGACTCTTACACGAGGTTATTGAGTACAA
TGTGTAAAGCAATCTAATGCTCCAAAGTATGGCTTACGGTAAAAAGGATT
TGATAAGATACAGAAAATCTCccatatttgttttttataaacaagTGTCT
GTTGTTGTCAACTGTTGTCAActgctcgtgtatgcttaagttctcaaagc
atccaggcatagcttatgcttattatatgcaaagtttttcaaaaaaattc
aaaaaaatttcagaaattttgtttagattttgggagcagttgaatgtagc
tagccgtggaatctggtggaatgtctttttggacctacctccgNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatattttgcac
aaagatgcaaaatggcaatggccaaaatgtgacggagcccgattttcgaa
aaaaaatcatttccggccgaaaataccggaaatatgccggaaaacccagt
tttttggcattttctcaagatttcatcattagttttttctgattttttgc
ataaagatgcgtgttagcaatgcccaaaacttggtcgagtccgatttttg
agaaaaaattttttccggtcggaaatgccggaaatatgccggaaatcgcc
gtttttctggattttcattggactttttccatataattggttgttttttt
cattcaaaaacattattaatagcaatgcccaccatcaagtatgttttaat
tttcaataaaattgattttagaagccggaactatttaaaaatcgccggaa
caacctattttcgccggaaagacactatttcttgaatttctcgagctgta
ctttatattcttttatgaaattttgcacactgatgcaaaatgacaatacc
taaaatgtgatggagccgaaaaaattttttccggtcgaaaatgccggaaa
tatgccggaaaaacagtttttttggcattttctcgagattttatcattag
ttttttctgattttttgctcaaagatgcgtattaacaatgcccaaactat
ggccgagtccgatgtttgagaaaaatttttttccggccgaaaataccgga
aatataccggaaaaactgttttttggggattttctcgagattttatcact
agtttttgctgattttttgctcaaagatgcgcattaacaatgcccaaaag
atggccgagtccgatttttgataaaaagatttttccggccgaaaatgccg
gaaatatgccggaaatcgccgtttttgcagatttgaattggactttttcc
atacaattctttgttttttcacttaaaaaaattattgataacaatgccac
catcaagcatgattcaattgtcaataaaacttttgcaatttttcaactgg
aactttctatttcttttttcccNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNctaagcgctatattttcttaatgattttttttctccttattg
ctatctaagtttcatcatcaggtaggtccattcagcatgttgcttgtttc
tgattttttgcacaatgatgcaaaatggcaatgcctaaaatgtatcggag
cccgattttcgaaaaaatatatatttgggcaaatttgggNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagaatggctgaag
tggtttttcctggaaaattcttattcgccttaaaagacggattttcgtat
tttggggaaattccctttaaccaaataagaaaatatagctttttactCAA
Tgctgactcataatttttttctgattttttgcacaatgatgcaaaatggc
aatgcccaaaatgtgacggagccagatttttaaggaaaatttttttgggc
aaatttgggccaaaaacagcttaaaaggttttttgggcctgaatggctaa
agtgattttcgtatttggggaaattcctttttaccattttacattattca
acacacaagctttatttttccattctgaatttttgtacagttattgtcac
ttttttcttattttcatctgatgttaatcattaggtaggtccattcagca
tgttgcttgtttttacttacctctaccaaacctttttaaacagataaaaa
atgacaacttgaaaattatttcaggctgacatatatgatTTTGTTAtact
taggaattctgcaaatttgagcctttatatgcttataagtgttatgttta
taaaaaacatcTCTAATAAATGCCTGGTTTTGCTTGTGGCTCCTTTCTTT
TAACAATATCAAGTTTTCTCGTTTTCCTAGAAAACATTGAAGAATGCAGT
ATGGAAAAATTTGATTGCTTTACAAAAGGTAAATGTTTtggaattttatt
aaaatagaCATAGACCCCTTTTGAACTAAGGGTACCTGGACTGGTCCCTC
TTGAATTAAGATAGCATCTTGATCTTTTGATGAACAGAATGCGGCTGCAC
TGATCCCAGAGAATTGAAGtgaatttaaaattaatttagCCTTTCCTGGT
ataagaattatttttcaagagTTAGTTTTGTTATGCAACTAAACTCCACT
GCGGAAACAAACTAGTTCCTGCTTGAATTGGTGCTAAGATCTATAGTACC
AATTTTTTCTTACCCTCGTTATTAAATAATACATTCTTTCTTTCCAGTTT
ACAGAGACATTAATAATGGTAGAACGTTNTAAATAATACATTCTTTCTTT
TCAGTTTACAGAGGCATTAATAATGGTAGAACGTTTGACAAATGCCAACA
AAAATGTCCAGCACCTTGTTACATGGAATCGTTCACACTACAAGCTGGAC
AAATCAAGATTGGTACAAAGTTCATGTACGATAAGCTGGCTCTGCTCATG
AATATATCGGTAGAGGAAAGCAAAGATTTTGTCAGGTACAATCCATTTTG
ATATGCAGCATATGAAAATCCATAAAGAACAGTATCCAATtactgaaatt
tatttttaactaGCACGTAGCAAGTCCTTTTCCAAGGCTCGAAATCTAAT
ATGTCGTCCTGTTGTGCGTCTCGCTAACATTCGATCAGATTTTCACCCAC
TATACTAATAGCATATAGGTGTGGGAGCCTCGTGCACAACGAAACTCTAG
TGAAGCTTTTCACATGCCTTCTTCTTTTTAGTCATAACTTCGTTGGCATA
AGAATTGCTTATGGCGATGTGATGTACACAGAAGAAACACTAACACCCTC
TGTTGATTGGAAAACACTTTTAGGTAAAGAGCTCTTAAAAATTGCTTATT
TTTCATATTCACATCTTTAATGGTTACTGTCCTCAAAACTTGCTCTTTAC
TACTACGttttttttctggttttttgcatgtaagtagggtaccatcatag
gtaaaagatggctcaagcagatttttataaaaaattttgttggctcaaaa
aacgcatgtttatctataagaattactattaataagcatacatcaatgtt
cttagtcaaattactcaatatcttttatgagatagatgttttatttgctc
atgagggcttacttttgaataaTATGTgtttttagacatgaaatttagGT
TGCTTggcatgtttttatagaaaagctgatagaaaattcgatatttttta
taagcacattatcaattacttaggtattagcttttctctttcattcttta
tgattgtttacacaaagatgcataactataaaccctcgaatgtgacggag
ctcgatttttggaaaaacaattttttgggtaaatttcagctaaaaaacgg
catagatgttttttttgctcacgaagtcttgaatatgaaagaatatttca
agagcatgaaattttggtttctaaacgtttttttataagaaacaaacgac
taatttcaATAGATCGTCACCATTTGtattctgaatgattgtttaatggt
catgctcacgtagatatcaattatatatgtgttaaatgcataaccaggta
ggtccataaaagtatcacttgtttcttttgtttcagcAACGATTGGAGGA
AGTCTTGGTTTGTGCCTTGGATGCAGTTTCATCACATGTTgcgaatttct
tgttttttgtaTCACTTATGCTttattgaagcgaaaagaaaGTTCGAAAA
GTGCTAAGAAAACTGTTGATGTGGTCAcgtgattcgaataatagaggctA
CAATGatgatttttaacaatttctggAGAAAATTCCGTATGTGAAAGATG
TCAAAGAATTCTTTATTAGAAAGATCACAACAAGTACATTAacgaaaata
tattacaaaataCTACTAACATAGAAAATATCTCAAATTCATATTGTTAG
CATTGTGAACAGTTATTTTAATTGtaagatttttaattttgaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010118XLOC_010118Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018050-exon-sc0000284-1491911889:169780..170143TCONS_00018050-exon-sc0000284-1491911889:169780..170143Clytia hemisphaericaexon
TCONS_00018050-exon-sc0000284-1510915933:169780..170143TCONS_00018050-exon-sc0000284-1510915933:169780..170143Clytia hemisphaericaexon
TCONS_00018050-exon-sc0000284-1575043694:169780..170143TCONS_00018050-exon-sc0000284-1575043694:169780..170143Clytia hemisphaericaexon
TCONS_00018050-exon-sc0000284-1491911889:171517..171685TCONS_00018050-exon-sc0000284-1491911889:171517..171685Clytia hemisphaericaexon
TCONS_00018050-exon-sc0000284-1510915933:171517..171685TCONS_00018050-exon-sc0000284-1510915933:171517..171685Clytia hemisphaericaexon
TCONS_00018050-exon-sc0000284-1575043694:171517..171685TCONS_00018050-exon-sc0000284-1575043694:171517..171685Clytia hemisphaericaexon
TCONS_00018050-exon-sc0000284-1491911889:174710..174757TCONS_00018050-exon-sc0000284-1491911889:174710..174757Clytia hemisphaericaexon
TCONS_00018050-exon-sc0000284-1510915933:174710..174757TCONS_00018050-exon-sc0000284-1510915933:174710..174757Clytia hemisphaericaexon
TCONS_00018050-exon-sc0000284-1575043694:174710..174757TCONS_00018050-exon-sc0000284-1575043694:174710..174757Clytia hemisphaericaexon
TCONS_00018050-exon-sc0000284-1491911889:175134..175314TCONS_00018050-exon-sc0000284-1491911889:175134..175314Clytia hemisphaericaexon
TCONS_00018050-exon-sc0000284-1510915933:175134..175314TCONS_00018050-exon-sc0000284-1510915933:175134..175314Clytia hemisphaericaexon
TCONS_00018050-exon-sc0000284-1575043694:175134..175314TCONS_00018050-exon-sc0000284-1575043694:175134..175314Clytia hemisphaericaexon
TCONS_00018050-exon-sc0000284-1491911889:175561..175652TCONS_00018050-exon-sc0000284-1491911889:175561..175652Clytia hemisphaericaexon
TCONS_00018050-exon-sc0000284-1510915933:175561..175652TCONS_00018050-exon-sc0000284-1510915933:175561..175652Clytia hemisphaericaexon
TCONS_00018050-exon-sc0000284-1575043694:175561..175652TCONS_00018050-exon-sc0000284-1575043694:175561..175652Clytia hemisphaericaexon
TCONS_00018050-exon-sc0000284-1491911889:176416..176773TCONS_00018050-exon-sc0000284-1491911889:176416..176773Clytia hemisphaericaexon
TCONS_00018050-exon-sc0000284-1510915933:176416..176773TCONS_00018050-exon-sc0000284-1510915933:176416..176773Clytia hemisphaericaexon
TCONS_00018050-exon-sc0000284-1575043694:176416..176773TCONS_00018050-exon-sc0000284-1575043694:176416..176773Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000284supercontigsc0000284:169780..176773 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.576193	0.493538	0.849496	0.273568	1.03189	0.156029	1.19527	2.18776	1.86796	1.30409	3.10831	2.34224	2.0742	1.86819	0.220678	0.068655	2.37685	2.65617	4.3617	6.45283	5.689	5.53449	1.98726	2.25428	2.86508	2.80796	0.684314	0.787592	0.0944273	0.439994
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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