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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018066 ID=TCONS_00018066|Name=TCONS_00018066|organism=Clytia hemisphaerica|type=transcript|length=10332bp protein sequence of TCONS_00018066-protein >TCONS_00018066-protein ID=TCONS_00018066-protein|Name=TCONS_00018066-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1745bp MELKIFLFWCIYLVDILVDCAITTTSKELDIVTNTGINVNYGRATKLTDQRun BLAST on NCBI transcript from alignment at sc0000284:201821..242819- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018066 ID=TCONS_00018066|Name=TCONS_00018066|organism=Clytia hemisphaerica|type=transcript|length=40999bp|location=Sequence derived from alignment at sc0000284:201821..242819- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000284:201821..242819- >TCONS_00018066 ID=TCONS_00018066|Name=TCONS_00018066|organism=Clytia hemisphaerica|type=CDS|length=26190bp|location=Sequence derived from alignment at sc0000284:201821..242819- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00018066 vs. Swiss-Prot (Human)
Match: FREM2 (FRAS1-related extracellular matrix protein 2 OS=Homo sapiens GN=FREM2 PE=1 SV=2) HSP 1 Score: 1044.26 bits (2699), Expect = 0.000e+0 Identity = 640/1737 (36.85%), Postives = 956/1737 (55.04%), Query Frame = 2
Query: 557 AITTTSKELDIVTNTGINVNYGRATKLTDQH-LKIKYEKGSICKVSVLKVNPFSSRIGAFVPSVFPCDFAPNSIYYQHFGSMSRSTEKIKLQIRVDTEHDTYLKSFEFTVNIGLYEPFEILKRVENLVVDEIGGLSEPFSENVIGLRFDPYKHTCRVRFLSTQGGPPYYGSLVNASD-PDGF--GQVSKFKDISCHRFLNGNLRYAHQRSRRTSNRDYLPFVIELYDKFTSLMD---KREFIQIPVRIRRAPENQPPIVNYNHASYSLQVDQLVLTALTPAVLRVEDRETDSDSIVFNITQKYDENDGYLVHTDDPSSPVRTFYQKDIRDLKIAYKASDKLSTTQRMQPIYMEARDSYGAASSKFYIIIVIKPMNSFAPRVIRNEVLTMFEGQSRLVSRDV------LSVRDPDNEAEVVIRVSDGLKNGRLEMYGKSV-----TKMSVADIAGKRIRYVHDGSD-TTSDNIVFHISDG--KHTVQVLFVVLIVPRDDQPPQLTYNTGLNVKEGETKMIGQFLLSATDIDSDNTKITYKIIKAP--SAGILVYRQIDTPNDFARRERQ-WRLTNSSYERIVTEFTQVDVILGRIFYRHSGEEI---FQDMFTFRLSDNTNVPNQSGIKTFIIVIDPVDDLPPTPYPGCPFTLNTAENQPGIFTKKSLRYVDGDSSDEEITYRITSQPYF--ENSGTNAGKLFISRKGQSEIADSFTQKYINHFKVKYVPNTLLQSIIQSSKVI-FKYDVTDSAGNLRANQNFSIDLRAVKNKPPVYQTNSVLRVKSEGSQVITTAQLNAQDDDSELKDLVFIVKKLPLYGVLTNSGYRQSVGSSISLIDIRESRVTYLHGGNDATDDVIKFMLTDGINMVGVQLRINIIHGQSTLSKESRKPRIFENRLNVEENGIIEIGSKTFGLPTFVEDDQIDHQLTFKVDPPPKHGQIERKGASTNIFTLEDIASGQIAYHHTDGEVGTQKLQDLINLNIPQNDQDIFIGGQLYSGLTLTVDIAPVNSQPPKI-DGPLLIEVVESKKSIL---KINISDSDTSPENINCNVTELPLFGFIENLTPLDGSEIQRPNIPVEKFRVSDLNQGRVSYVQSKHNKIEPDMDSFNLRCFDGNNTSSEVKVHVSIAPINDEPPVLFIQSQIVCIEDDLIIFDLSKINPFDRDRPTDELVFFVTKQPINGELLLQ--NNSALNPATDFGYEVLSGDTDITLIYQHKGTETTKDQFELSVFDGVHTTEGVVNITIIPMDDEQPRLVVNTGLRIDRGQSKTITTSNLKAQDLDSEDSQLMYIVMMESISGKLQKLNTSQLYTDLVKGNNFTQTDIDKKRIRYTHLNMKSEDRDLIRLDVTDGFNRLINQXXXXXXXXXXXXXXXXXXKGLRLLENSRAILTTDVLSASDINTPDENLQFIVTRLPLKGFLEHSDRSGIPLTRFTQLDLAANKISYLHTSLDEIKADNFEFEVTDGQNKVFRTFRIHIDSVDNKLPVLQKSIVYTGQGQEKIITPFELNAYDNDTKLNNVIFQIHRPPRHGVIYLDGITRTFRFTQQDITENRLSYQHDGSMGTIDSFTVAAGDGVNEGYYLKGSKRIQ-KRPITVQIEITAIDKNAPVIVTNKLITSLR-VRRKKIFTKLSINVLEAVDSHSESNSIIFNITGHPKEGKLINVKNKGVIITQFSQDDVNNRIIEYLLNGSSSATNDIFFFDVLDGNGNALRGQNLKLKWSRVCIHQEQFTVQE 5653
A ++E ++ N G+ V +GR L H L ++ + G C VSVL + + R G P FPCDF P + Y H G+ S S ++++LQ+R D + V + ++ E++ R LVV+E+ G S + F P CRV LS G P YG L++ P G G + + C F +RY H + R+ NRD++P V+EL + + KRE Q+ VRIR EN P ++ A ++VDQ VLTALTP +L ED E+ SD ++FN+T + GYLV TDD S P+ +F Q+D+R LKIAY+ + S +R+ + +E D GAAS F ++V+KPMN+ AP V RN L ++EGQSR ++ L + D D+ V + V GL++G L + G S +VA++A ++ Y HD D + SDN+V + DG +H VQ LF + +VP DDQPP L NTGL + EGET I LSATD+DSD++ + + ++++P + G L+ RQ P++ R WR + YER VTE+ Q D+ GR+FYRHSG D FTFR+ DN + PNQSG++ F+I I PVD LPP GCP + E+Q KK LRY D D+ D E+ Y +T P EN + S + FTQ INH K+ Y P Q + +++V F++ V D AGN+ A F++ L V N+PP N+ ++ +G +++ +L+ D D+++ + F + + P +G + SG VG L DI++ RV+Y H G+ + D ++D ++V + LR+N+ + S E+ L+V ENG EI + ++ D LTF ++ PP +G+I G FT DI G + Y HT GE+G D NL++ Q+ IGG G+T+ V I PV+SQ P+I G LI V+E KS++ I+ D D+ ++I C + P G++EN++P GSE R I + F + DL QG ++YVQS H +EP D F RC DG N S + I P NDE P +F++ + + +E ++ D +N D D P D+L F +T+ P +G ++ Q N + L + + S ++IY+H +ET +D F + + DG H+ E V I +IP+DDE PR+ +N GL I+ G +K I L A DLDSED L+YI+ G LQ+ + + ++ G NFTQ ++D+ I+Y HL + RDLI+ DVTDG N LI++ F + I D + P V++KG+ L E + LTTD+LS SD+N+PDENL F +TR P++G LE +D+ G+ +T FTQL LA NKI Y+HT+ DE+K D+FEF+VTDG+N VFRTFRI I VDNK PV+ + + + K+ITPFEL D DT + F I + P HG + + FT+QD+ EN +SY+HDG+ + DSF+ DG + +Y+ + +RP ++I++ A+D + P I NK ++LR + + ++ +L+ D S S+ F +T P+ G L+N+ ITQF+Q D+++ I Y+L ++AT+D+F+F V DG GN L QN +L W+ + +E + V E
Sbjct: 63 AAGVPAEEAIVLANRGLRVPFGREVWLDPLHDLVLQVQPGDRCAVSVLDNDALAQRPGRLSPKRFPCDFGPGEVRYSHLGARSPSRDRVRLQLRYDAPGGAVVLPLVLEVEV-VFTQLEVVTRNLPLVVEELLGTSNALDARSLEFAFQPETEECRVGILSGLGALPRYGELLHYPQVPGGAREGGAPETLLMDCKAFQELGVRYRHTAASRSPNRDWIPMVVELRSRGAPVGSPALKREHFQVLVRIRGGAENTAPKPSFV-AMMMMEVDQFVLTALTPDMLAAEDAESPSDLLIFNLTSPFQPGQGYLVSTDDRSLPLSSFTQRDLRLLKIAYQPPSEDSDQERLFELELEVVDLEGAASDPFAFMVVVKPMNTMAPVVTRNTGLILYEGQSRPLTGPAGSGPQNLVISDEDDLEAVRLEVVAGLRHGHLVILGASSGSSAPKSFTVAELAAGQVVYQHDDRDGSLSDNLVLRMVDGGGRHQVQFLFPITLVPVDDQPPVLNANTGLTLAEGETVPILPLSLSATDMDSDDSLLLF-VLESPFLTTGHLLLRQTHPPHEKQELLRGLWRKEGAFYERTVTEWQQQDITEGRLFYRHSGPHSPGPVTDQFTFRVQDNHDPPNQSGLQRFVIRIHPVDRLPPELGSGCPLRMVVQESQLTPLRKKWLRYTDLDTDDRELRYTVTQSPTDTDENHLPAPLGTLVLTDNPSVVVTHFTQAQINHHKIAYRPPG--QELGVATRVAQFQFQVEDRAGNV-APGTFTLYLHPVDNQPPEI-LNTGFTIQEKGHHILSETELHVNDVDTDVAHISFTLTQAPKHGHMRVSGQILHVGGLFHLEDIKQGRVSYAHNGDKSLTDSCSLEVSDRHHVVPITLRVNVRPVDDEVPILSHPTGTLESYLDVLENGATEITANVI---KGTNEETDDLMLTFLLEDPPLYGEILVNGIPAEQFTQRDILEGSVVYTHTSGEIGLLPKADSFNLSLSDMSQEWRIGGNTIQGVTIWVTILPVDSQAPEIFVGEQLI-VMEGDKSVITSVHISAEDVDSLNDDILCTIVIQPTSGYVENISPAPGSEKSRAGIAISAFNLKDLRQGHINYVQSVHKGVEPVEDRFVFRCSDGINFSERQFFPIVIIPTNDEQPEMFMR-EFMVMEGMSLVIDTPILNAADADVPLDDLTFTITQFPTHGHIMNQLINGTVLVESFTLDQIIESS----SIIYEHDDSETQEDSFVIKLTDGKHSVEKTVLIIVIPVDDETPRMTINNGLEIEIGDTKIINNKILMATDLDSEDKSLVYIIRYGPGHGLLQRRKPTGAFENITLGMNFTQDEVDRNLIQYVHLGQEG-IRDLIKFDVTDGINPLIDRYFYVSIGSIDIVFPDVISKGVSLKEGGKVTLTTDLLSTSDLNSPDENLVFTITRAPMRGHLECTDQPGVSITSFTQLQLAGNKIYYIHTADDEVKMDSFEFQVTDGRNPVFRTFRISISDVDNKKPVVTIHKLVVSESENKLITPFELTVEDRDTPDKLLKFTITQVPIHGHLLFNNTRPVMVFTKQDLNENLISYKHDGTESSEDSFSFTVTDGTHTDFYVFPDTVFETRRPQVMKIQVLAVDNSVPQIAVNKGASTLRTLATGHLGFMITSKILKVEDRDSLHISLRFIVTEAPQHGYLLNLDKGNHSITQFTQADIDDMKICYVLREGANATSDMFYFAVEDGGGNKLTYQNFRLNWAWISFEKEYYLVNE 1782 HSP 2 Score: 842.417 bits (2175), Expect = 0.000e+0 Identity = 488/1253 (38.95%), Postives = 712/1253 (56.82%), Query Frame = 3
Query: 5664 RLIXSRVCIHQKQFTVQETDLKANLKFKRFGNLQTSAFATMVIKQEFDTDNKAFV-ESEKVVHWKSGKDIASTSLQLIDDVFYDNMRTVSVTLKDGVNTLIGDGCNMTVSITDPEDEPIVSMVGSEFKINESIGVLKILLQRKGDAKKLTKVYCITESDSARGTSGYAVTSYHDYISRFDEEEPSIVTFEEGEVEKICEIKIIDDTTYEIDEEFKVFLKPLFGSLINETQSDGVVTILNDPKDELEFSLEKTEYKVSEDIGFIRLNVKRTGLDRSFKSYVQIMTKEHVPVSAKSNDDYKGIFKTLEFGVGVTSIQVNLQIYDDEYRPKMEGEESFNVELRNPRNGRLSTTHSKAIVTIHDLENDVPKVGFEKDEYEFDENAGVIKIPIQREGDLSQEVSVLCYTRQSSARVVDDFDERPKSYTSMIKFKRFEKTKYCKVKLVDDNVYEKDEIFYIWLDRVYYN-----VXXXXXXXXXXXXKDNDKPQVFFSEKKYYFYEPSKEEKESIVYVTVERDGDVTKPTSVSLETNDGSAISGRHYEPFARMLKFDAGISRLSVPIKLYHSKKVNVRLAFTLLLKRHPDD-ALSLIRERKAIVSIEERRVRSDVTFPLNPVVVSLTDYADVSKAKK--EAVNGYPLICVTACDTHFPMYDKTNAICNQERIINNMTVYRWQIQS----DDVIGGYRDISLPVFFTKTSTITLDSIYFTAKSRVRCIARAYSLDGGLGLESKSQVIGISEKEGICKPRNTARLAENTFSAQVSYTGNDDPHHKNMIKLSVLIPHYDGLLPVVSTKRPSNFDLILSADPSRYKQHTCSNLLNENEVTTKNGFLSSSIQRN--IFSSHPFEFDKRLRSANSVKFYENLNLDSCLWTFESYYDMNELVTLCGGNIVSEGLVANSVQSNLVLNIPLFVSYLY--PSKSGRFIEYNHESSFRLTAVYDTGALWSDGVG-LASGKLEGSLYPASIIVLNKDNRLLFKFKTKTAFRGVFIKETEDGERKSSIQSRDQPLLTFTLRHIKSEETFNEPIQEWEMTSDMAVRDYSGMYIFNLIPCVVQTDIDFSWPPQCVPQEEVTFEVPLSIHQTSKPVETSFTLNTR-FIVAKEDQTTMENEL----PDNVAFDEGDNIFGRVL---VSNDEKAYRVKIEKVLLCAGQDGYIPIFNPDNKEFGCLVDTNRLMYRLQILNRVNPGHETREFGRVPFKAAFT---------KKKGASDGFKMDSTPLFKAGNGRTWYLH 9317
RL + + ++ + V E ++ KR G L ++F ++ + +K F +++K V + G+ A+ ++++ D ++ T V L + V + TV I DP DEP V + S++ + E +G L I ++R GD + V C T+ +A GT +V SY DYISR E+ S+V F++ E EK+C I IIDD+ YE +E F V L G I VTI+ D DE F EY V E G++ + V RTG D S S V + +++ P SA + DY GI + L+F GV V + I DD +P +EG E F + LR P N L SKA V+I+D +D+PK+ F++ Y E+ G I I R GD+ SV CYTRQ SA+V+ DF+ERP + TS+I F E K C ++L+DD +YE+ E + L N N I D DK + F E K+ EP + + ++ + V R GD +K + V + T DGSA SG Y P + ++F G ++ V I++ +R AFT+ LK PD+ ++ ++ KAIV IEE +DVTFP P +VSL Y D SKAK+ E ++GYP+IC+TAC+ + YDKT +IC E I + +T YRW I + D V R++ FFT + +TLDSIYF SRV+C ARA + +G GLE S ++ IS +EG+C+PR + FSA++ YTG +D + N+IKL+V +PH DG+LPV+ST+ SNF+L LS D +R H CSNLL+ EV T GFL+ + + I ++P+++ +R + +++FY NLNL++CLW F SYYDM+EL+ CGG I ++G V N VQS + L +PL+VSY++ P G + ++ +S RLT VYDT LW+DG+G +L+GSLYP S+ + + RL FKT+ F G+F+ S I S D P LTF+LR I+SE T+N+P+Q+W SD AVRDYSG Y L+PC + ++ P C P+E VTF++ + Q S PV F+LNT+ ++++K+ + + +VAF EGD I+GRV+ V N ++ IEKV LC G DGY+P ++P N E+GCL D+ L+YR +I+++ P + FG V F A + SDGFK+DSTPLF+ GR WY+H
Sbjct: 1765 RLNWAWISFEKEYYLVNEDSKFLDVVLKRRGYLGETSFISIGTRDRTAEKDKDFKGKAQKQVQFNPGQTRATWRVRILSDGEHEQSETFQVVLSEPVLAALEFPTVATVEIVDPGDEPTVFIPQSKYSVEEDVGELFIPIRRSGDVSQELMVVCYTQQGTATGTVPTSVLSYSDYISR-PEDHTSVVRFDKDEREKLCRIVIIDDSLYEEEETFHVLLSMPMGGRIGSEFPGAQVTIVPDKDDEPIFYFGDVEYSVDESAGYVEVQVWRTGTDLSKSSSVTVRSRKTDPPSADAGTDYVGISRNLDFAPGVNMQPVRVVILDDLGQPALEGIEKFELVLRMPMNAALGEP-SKATVSINDSVSDLPKMQFKERIYTGSESDGQIVTMIHRTGDVQYRSSVRCYTRQGSAQVMMDFEERPNTDTSIITFLPGETEKPCILELMDDVLYEEVEELRLVLGTPQSNSPFGAAVGEQNETLIRIRDDADKTVIKFGETKFSVTEPKEPGESVVIRIPVIRQGDTSKVSIVRVHTKDGSATSGEDYHPVSEEIEFKEGETQHVVEIEVTFDGVREMREAFTVHLK--PDENMIAEMQLTKAIVYIEEMSSMADVTFPSVPQIVSLLMYDDTSKAKESAEPMSGYPVICITACNPKYSDYDKTGSICASENINDTLTRYRWLISAPAGPDGVTSPMREVDFDTFFTSSKMVTLDSIYFQPGSRVQCAARAVNTNGDEGLELMSPIVTISREEGLCQPRVPGVVGAEPFSAKLRYTGPEDADYTNLIKLTVTMPHIDGMLPVISTRELSNFELTLSPDGTRVGNHKCSNLLDYTEVKTHYGFLTDATKNPEIIGETYPYQYSLSIRGSTTLRFYRNLNLEACLWEFVSYYDMSELLADCGGTIGTDGQVLNLVQSYVTLRVPLYVSYVFHSPVGVGGWQHFDLKSELRLTFVYDTAILWNDGIGSPPEAELQGSLYPTSMRI-GDEGRLAVHFKTEAQFHGLFVLSHPASFTSSVIMSADHPGLTFSLRLIRSEPTYNQPVQQWSFVSDFAVRDYSGTYTVKLVPCTAPSHQEYRLPVTCNPREPVTFDLDIRFQQVSDPVAAEFSLNTQMYLLSKKSLWLSDGSMGFGQESDVAFAEGDIIYGRVMVDPVQNLGDSFYCSIEKVFLCTGADGYVPKYSPMNAEYGCLADSPSLLYRFKIVDKAQPETQATSFGNVLFNAKLAVDDPEAILLVNQPGSDGFKVDSTPLFQVALGREWYIH 3012 The following BLAST results are available for this feature:
BLAST of TCONS_00018066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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