TCONS_00018098 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018098
Unique NameTCONS_00018098
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length353

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018098 ID=TCONS_00018098|Name=TCONS_00018098|organism=Clytia hemisphaerica|type=transcript|length=353bp
GTTTTATCGAGAATCAAAGGAAATTAAAAAGTTCGGTTATAATGATGGTG
AACGGAAGATTGAAGAACAACGCTTACACAGAACTCAACAGCAAGTCTTG
CCAATGTCCCAAACCTGATCAACATCAAATCAACTTGACCATAAATTACT
CAGCAACAGAAGAAAGAATTTCATCTTGTCCTGCTTATGATAATGTGATT
ACACCACCACCGTCTTATAGAAGTTTGTGTGGATGTTTTTTGACAAACGA
GCCACCGAGATATCAAGTTGTAACTGGACGACAGCTAGATTATGGTACAG
TGACAACTTCAACCATTTTCGAAACACAATTCGTCAGGACAAGCCGTAAT
GCA
Run BLAST on NCBI

protein sequence of TCONS_00018098-protein

>TCONS_00018098-protein ID=TCONS_00018098-protein|Name=TCONS_00018098-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
FIENQRKLKSSVIMMVNGRLKNNAYTELNSKSCQCPKPDQHQINLTINYS
ATEERISSCPAYDNVITPPPSYRSLCGCFLTNEPPRYQVVTGRQLDYGTV
TTSTIFETQFVRTSRNA
Run BLAST on NCBI

transcript from alignment at sc0000287:1325..13483-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018098 ID=TCONS_00018098|Name=TCONS_00018098|organism=Clytia hemisphaerica|type=transcript|length=12159bp|location=Sequence derived from alignment at sc0000287:1325..13483- (Clytia hemisphaerica)
GTTTTATCGAGAATCAAAGGAAATTAAAAAGGTATTTATTTCTCATTTTT
ATATAAAAACATAAATATAAACCCTGGATAAAGCTATATCTACCATCTTC
GATCGGAGCTTTCAAAAGTGGTACCCTAATGAAAGCATAGATTTATAAAG
CCGAGGTAGGAAATCCTATCTAAATCACGTGACATTACAACAGAATTTCA
GCACTTGACCAATCAGAAGCTTCGCGGGTTTCCGAAAACAACAGCAGCAA
TATTTTTTGCGATATTCATTTTTTTTCTTGGAAGAGCTTAAAGCATTCGG
GCTTTATAAATCTATGAATGGAAGCACTACTCGACGTGGGCCACTTTATA
ATCCAATGAAATTTTCGTTTTTTCACCCACATTGAGAAATTGTTAAAAAC
GTAACTGTACAGATCAAATATTAACCAAACGAAACTTATCCCTGATAACT
GGATAAAATGACCCTGAAATAACCTGTGGGTAGAAAGAACATCATCATTG
GGAGAAAATAGTTTTTAAAAGATTTTAGCACACCCCTTCTCACAGACCCA
ATTAGACCCCAAATATTGTCCCCAGTGGAAAATTATACTCCAATTTTTGT
ACCCACTGAAAATAATCAAATAAACCAATCCTCGCTGCAAAATAGTATGC
TATTTTCCCCATCCCCACTGAATTTTCTGACTTGAGAACAAATGGATTTA
ATACAAAATATGAAAATATCAATCCACATTGAGTTTTAGTCCGTTATTTT
TACTCCTATTGGCTGAAAAAATCGTACCAGATATGTGAGAAGGGGATGTT
TTAGCTAACTTGAAACAAAACGATTCAATTATTTATAGAAAATTGAACGA
AAAAATCAATCACATAAATCTGCAACTTTTTTGGGAGGGAGGAGGCGTCT
ATAATCTTTCACAGTGACCAGATGAGCCAAGAAAAAAATTTCTTATAAGA
ATGTCAAAAAAGGTCAAACCTTCAGACGTTCTGGGTTTAAAACCTAAAGA
TATACTTAAACTAAAAACGTTAATATTTTTAACATCAAATGATTGTGTAT
TTTGGTCTTATATCCCTAACAAATTGTGTATGTTTATACGACATTTTTGT
TGTTCTTGTATCAGAAAACGCGTAATTGAGTTCAAAGAAGGTGCACAGTT
AACTGCAATCATGGGATAAATTGTGAAACAAGAGTATAGCCTGTTAATAT
TACTACGCGGAAACTCCATTGAATGTGGAAACCTAAGAAAAAAGATCAAT
TGTGTTTACACAACACTTTCTTCCTTTTATAATGAAAAGTAAATAGCACT
CATGATTGATCACGAAACATAAAGGCCTATCTACACTAGTCAATTATAGA
TTGTTTTCTTCCTTTTTCGTTCACCCCTGTCTCAGTACCCTGAGTATCAG
AGGTTAAGTTTTCAAAGAAAATAGTAACCTCTGAAGACAAATAATAGAAA
TTTTATCGCGCATGTGTCAATCTAATCACTGTANNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNTTTTAGTTTTCAGTAAATTTCTTAGGCCCC
TTCTGAGAGATTTTTCAAGTTACAAGTCTCCTGTTTTTCCGTTGGAAAAA
TATGTGGATGGAAGTTTTTAACATCCAACATTNTTCTGCAAAGAGACGAA
AAATTATTTCCTAGATAAAGCTCTTGCTAGAAGCCTGCAGTACCTAGTAC
AAGCCTTATTATAAAGCTTTTTCTCGGCTTGATATCTTCTGCTATCTTCT
CAGCATAAGCTTTTGTTTTACATATACTGACACTCAATCTCTAGTTTCTC
GTATGCAATATCTCCCATAATCACTCAATGACGAACTGCTTAATATTCCA
CTTTTATATTAGTTTGTTAACAAGTCACAATTCTTGATACATTATAATCT
CTTCTCTAGCACGAGCCATATTATTACGTCAGTAAGCAATCATGTTTCTT
AATTTCATTAAAATTTTAAACCAAATATGTTACTTGAAAATTTATTTTTA
TATACAGTATGATATGTTCATAGGCACTGGTACAGACCCCTTCGCACTCG
TATTTAGTATATATTCCAAATGTCTATTCAGTTCTTCGTTCACTTTTCTA
CATAGTTTCAATTAGCTTAATTAGTATTTACAATTCCGATCTCCCATCCA
ATTTTGTATAGTCTAACTTAATTTCATATTTCATCATCTATTTCATTGGT
GGTCTACCAGTATTATGTTTTTTTTTTTGTTTTTTTTAGGTAAAGTTAGT
TATTTATTTTATGTTCACCTCAAAATATTGAAAATGACAAACAGGCCTTG
CTATACCGGTTTTATCTTCGTTTGGCTGAATTCGAATTTATTACTTCTGG
TCGCGGGACTAGATATCGTCCCAATTCTGAGTTAATCTTCTGCACACAAT
TACTAACACTTTACTTTGATAGCGTAGCCGGTCAGAGCATCTCACTAGTA
TACATAATAATTTTATAAATATAAATATTTTTTTCTAGACTTTGCACACA
TATGCTATATAATATTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNTTGCTATATTTTTAAGTTTTGATCGGAGCATAATAGCTTTCCTG
AGGTCTTTGGTGACATGTTGCTTATTATTAGCACGGATTAACCTTGTCTT
TAATGGTGCATGTTCGTTTAATAAATTTACAAATTTTCGTTCAAAAATAC
TATAATTTATGATGTTTCTGTCTTTAAGTATACTATTTAGCTCATTTAAG
AAAATAACTGAATTAAAATTTTTGTAATCCCTATACCTTTTAATTACAGG
TGGTAACTTANTCGTTCAAAAATACTATAATCTATGATGTTTCTGTCTTT
AAGTATACTATTTAGCTCATTTAAGAAAATAACTGAATTAAAATTTTTGT
AATCCCTATACCTTTTAATTACAGGTGGTAACTTAACATATGTAGATTTC
ATCATGGTATGAACTAGCAGGTGATAATCACTTAAACCCGTTTCTAGAGC
ACCAGTGAATTGAAAGGAATGCTTCCTGTTTGTTAAAATCAAGTCAATGC
AGGTGCCAGCTTCTGACTTAAAACAGGTTTTTTCTTTGACCAGATTGTAA
AGGTCATGTGCATTCATAAAGTTTTTAATTAATTTATTTTCGGGTTCTAA
GTTAAAATCACCTGATATCACAAAATGGTCATAAGTTCTACTATAAAAAT
CTAATCCTAGGGATAAATATGATAAAAATTGCTCAATCTTTTCTTTTGAT
TTAATTTTAGTAGGATTTCTATAAATCATAAAAAAAGCACCATTTAGTTT
TCCTGAGGCTTATTTCAAAAGGAATGACCTCTATGCCTTTAGGGAAGATA
AAAGACGTAAGCTGATGTATTAAGATATCAGACCTAGCGTAGACCAGAAG
TCCCCCACTTGAATCAGTATCATCTAAGCGCAAGGGTGTTTTGTAGCCCG
GAAGTATCAACTTGCTGGTTGTAAAAGCTTGATCTAGCTTAGTTTCAGCA
ATAGCTAAAACGTCTATATTATTTTCCAAAAAGACATTTAGGTTCTTTAA
CTTATATTGCACTGAATTTATGTTTATATAACCTATTGTTAAATTAAGAG
GATGTTTCAATTTTTGATTTTTCAACTTAGTTAATTTATCACAGTCAGCA
TCTTCAAAAGCATTTTCAACACTCGGTAGGCATTCAATCAATTTTTTCCA
AGAAAAGATTTAAAATTTAGCGCAAGTCTCTTCAAACCTTTCGGATTAAG
ATGAAGTTGCTTTCTAGCCAAGCAAGAATTGTCAATATTTCTATTTTCCA
GCAGTCCGATGTTACAATCATTACAAAACTTTTTCAATTCCTCAAACTTG
TGATTAATTTTGCTGAAACCTCCAGATATATCATAACGCGCGCATAACTC
TGAGAAATAAATTTTTGTGTCAGGACTTTCTTTCTGAATGGTTTTGACGA
TGCTATTCCAATTTTCCTTCGTGTTATTAATCTTCTTCGTAATGTCGTTC
GTTCCTACATGAACAAAAATTTTGTCTGGTTTCTTTCGAGCGGTTGGTTT
AACATAGTCTATCTTAAATCTCTAGCTTAAACCAACAATGTTTAAAGAGA
CTGAGAGAGAAAAAAGAAAAAGTATTAGACGATCATGTTTATTTAACGCA
TCAATAGCTCTATTTATTTGATTTGATCACGCTATAGTCTGAATCGCAGA
CCTCTACAAAACCACAGGTAGTATAGGTCTGCTTAATGATCTACCAACCG
CTTTCCGATTCGCAAAGGAAATCTTGGCGAGTAATTTGATTGACATTGAT
GTGCGCACAAAAACGATCGTTTCGAACGTTTTCAATGGAATGTTTACATT
TGAAATTCGAATCCCAGACCAGAAAAACAAAACAGAAAAAAGATAAAAAT
CAATCTGATGCGCGCATTATGTACAGTCTGTAGATTTATTTTTGACTTTT
GCTTTTATAAGATATCTGGTCTGTAAATTTATCAAAACTTTTCCATGAGC
TCTTCGGTCGAAGCTCAAAAAATACAAATATGAACACAAAAGTGAAAGAA
AACAACCAGAAACACTCCAATCTCTTCAAAGAATTGAAGCTAAGTACCTG
AAAAGATACAAAGGCCACACATTATTAAAAAGTGAGATGCCAAAGCTGAA
GAAAAGTTCTTTCTTTGTTTTAACATTTAAAGGCCCTTGTTGAAGGAACA
ACAACACTCCCTTTTGTAGAATCATAAGAAGTAATGTCAGAAATATTCAA
TGTGATCCCCAAAATGCATGTACTGTATATCGACATAACTAGAATACCTT
GAAATAATCTGCAACATATCTGTAGAACTGACAAAACAATTATCTGGAGC
CAAAGTGATCAACGAATCCAGTGTGGTAAAAAATTATACACTCATGCAAG
TCCAAATTAAAGCATCAAAATGTAGTTTTATGAAGCAAAATTTTTTTGGT
GCACACAGAAGATACATCAGGGCACTTAAATTCAATAAATCTGATTTCTC
ATGTTTTACAAAATCTCCACATTAAACAAGAAAGGAGGAAGAAAAACAAG
CAAACTTCCTTCCGCCTACTTTTTTTTCAAAATCCAAATATATTTTCCAA
TCTATGATTTGGTGCCTCACAGAAAATTTAAACATTACTTAATGTTATAT
TTGTAGACACTCGCCAGCTAAAAATTTCTTTAGCCGTATATCGGCTAAAG
GCGGCAAATCTCTGGACAAAGGAAATATAGCTTATTAAGCATCCTCTATA
AGGAGCACGAATCCGTTAGTGGATGCCAGCAGCCTAATCACGCTATGAAT
ATTATAGTGGTTTCCACATTCCAAGACGTTTCCGCATAGCGATATTAACA
TAGCCCCTCCTCCAATGGCAATGTTGAAGGACATTGGAAAAGTCAGTGGG
AAGGTCGTTTGCACTAAACATTGCCACTGGGGAATGGGGGCTATTCCATT
GTTTTTCCAGCATTTTCCAGTGTTTTTCTCGAAAACTAAAGTCCATGATT
GTAGTAAATTCAAATTTTAACTTTACAATTTCTTGACTAGTTCGGTTATA
ATGATGGTGAACGGAAGATTGAAGAACAACGCTTACACAGAACTCAACAG
CAAGTCTTGCCAATGTCCCAAACCTGATCAACATCAAATCAACTTGACCA
TAAATTACTCAGCAACAGAAGAAAGAATTTCATCTTGTCCTGCTTATGAT
AATGTGATTACACCACCACCGTCTTATAGAAGTTTGTGTGGATGTTTTTT
GACAAACGAGCCACCGAGATATCAAGTTGTAACTGGACGACAGCTAGTAA
GGAACTTTTGGGACCTTAACACCCTTTCAGTCCCAGAGTTTTCACAGCTA
CTTTCCCAGAGCCGTAAAATGAGTTTTTGAATGCATTTACTCATGCTTCA
ATATCTCTGGAATCACTAAACCTAGTNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNATCACAATTTGAAAAATAAATCAGGGACCGC
TATGCAGTCCTCTGGGAAAAAACGACGGGTCCAAAGGGACCGCAGTGCGG
TCGCGTGGGACTGAAAGGGTTAAACATATACCTTTTCACCTATGAATGAA
TTTATGATATTTTTCTTTATAATTAGGTCTTCTCATTTTCTGTTTCAAGC
ATTATCGAAGCAAACGTTCAATTTGCGTAAGGGAATGGCAGATTTGGAAG
ATTGCTTCTATAATGGCGGGAAATTTTGTAATTTATCAAAACATGAAAAA
CCTCTAGGGTTAATTTTCTTTTCCCACTAGCCAATACACGTCTTTTTTAA
TAAGAACAAAATATGTAAGAACATATGGCTTCGATGGCCAAAATATTAAG
AACAAGTGAAGAAAATTTTGAGGCTTTGCAGACTCTAAAACACACAATTT
CTTAGGAAAATGGACAAAAATACTAAAAAGAACGGTGAAAATAAGAACAT
GTTAAGAATATTTTTAGGCTTAAGACTCAAAAAGTTAAAGTTAAAGAAAA
AGTTAAAAATCTGAAGGCTTCAAAGATTTCGGATGTTCTTATAAAGAAAA
GAACGTGTATATTGAAAGACATCTAAATTTTCCGTGTTAATGACCTGGCG
TGAACTTGGTATTCTCATTTATAAACGTTCGCCGCTTCTTCTTATTATTT
TTTTTTTGTTCCACCCGGTTCTTAGTGTAATCTCATGCTTATGGTAATTT
GATGGACCTTTTTGAAAGCGTTAATTTGAAATCTCTTGTGTTTAAGTGCT
GCAATTGGCTCTGTATGCACCTTAAAACTATGTTTTCATACCAAATAAAT
AGCGTTCTAGGGTGTTTGGAAGGTATGTCATATTCCTCGCCCAATTTTTA
CAGAACTACTTATATCAAACAGCTTATTTTGAAATCTTTGAAAATTCAAA
TCTTTCTTAAAATTTCAAAAAAGTTTAATATGCACAGGAAATTAATTCAG
AATTTCCAATCAGAATTGCTAATACAAACTGTCTCGGTAATAACGTTTTT
AAGTTCAGAAATTAATATTCTTTTCAATCTATTTATTGTTCAGGATTATG
GTACAGTGACAACTTCAACCATTTTCGAAACACAATTCGTCAGGACAAGC
CGTAATGCA

Coding sequence (CDS) from alignment at sc0000287:1325..13483-

>TCONS_00018098 ID=TCONS_00018098|Name=TCONS_00018098|organism=Clytia hemisphaerica|type=CDS|length=1053bp|location=Sequence derived from alignment at sc0000287:1325..13483- (Clytia hemisphaerica)
GATTATGGTACAGTGACAACTTCAACCATTTTCGAAACACAATTCGTCAG
GACAAGCCGTAATGCATTCGGTTATAATGATGGTGAACGGAAGATTGAAG
AACAACGCTTACACAGAACTCAACAGCAAGTCTTGCCAATGTCCCAAACC
TGATCAACATCAAATCAACTTGACCATAAATTACTCAGCAACAGAAGAAA
GAATTTCATCTTGTCCTGCTTATGATAATGTGATTACACCACCACCGTCT
TATAGAAGTTTGTGTGGATGTTTTTTGACAAACGAGCCACCGAGATATCA
AGTTGTAACTGGACGACAGCTATTTATCGAGAATCAAAGGAAATTAAAAA
GGATTATGGTACAGTGACAACTTCAACCATTTTCGAAACACAATTCGTCA
GGACAAGCCGTAATGCATTCGGTTATAATGATGGTGAACGGAAGATTGAA
GAACAACGCTTACACAGAACTCAACAGCAAGTCTTGCCAATGTCCCAAAC
CTGATCAACATCAAATCAACTTGACCATAAATTACTCAGCAACAGAAGAA
AGAATTTCATCTTGTCCTGCTTATGATAATGTGATTACACCACCACCGTC
TTATAGAAGTTTGTGTGGATGTTTTTTGACAAACGAGCCACCGAGATATC
AAGTTGTAACTGGACGACAGCTATTTATCGAGAATCAAAGGAAATTAAAA
AGGATTATGGTACAGTGACAACTTCAACCATTTTCGAAACACAATTCGTC
AGGACAAGCCGTAATGCATTCGGTTATAATGATGGTGAACGGAAGATTGA
AGAACAACGCTTACACAGAACTCAACAGCAAGTCTTGCCAATGTCCCAAA
CCTGATCAACATCAAATCAACTTGACCATAAATTACTCAGCAACAGAAGA
AAGAATTTCATCTTGTCCTGCTTATGATAATGTGATTACACCACCACCGT
CTTATAGAAGTTTGTGTGGATGTTTTTTGACAAACGAGCCACCGAGATAT
CAAGTTGTAACTGGACGACAGCTATTTATCGAGAATCAAAGGAAATTAAA
AAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010149XLOC_010149Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018098-proteinTCONS_00018098-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018098-exon-sc0000287-1575043694:13453..13483TCONS_00018098-exon-sc0000287-1575043694:13453..13483Clytia hemisphaericaexon
TCONS_00018098-exon-sc0000287-1575043694:3438..3693TCONS_00018098-exon-sc0000287-1575043694:3438..3693Clytia hemisphaericaexon
TCONS_00018098-exon-sc0000287-1575043694:1325..1390TCONS_00018098-exon-sc0000287-1575043694:1325..1390Clytia hemisphaericaexon
TCONS_00018098-exon-sc0000287-1510915933:13453..13483TCONS_00018098-exon-sc0000287-1510915933:13453..13483Clytia hemisphaericaexon
TCONS_00018098-exon-sc0000287-1510915933:3438..3693TCONS_00018098-exon-sc0000287-1510915933:3438..3693Clytia hemisphaericaexon
TCONS_00018098-exon-sc0000287-1510915933:1325..1390TCONS_00018098-exon-sc0000287-1510915933:1325..1390Clytia hemisphaericaexon
TCONS_00018098-exon-sc0000287-1491911889:13453..13483TCONS_00018098-exon-sc0000287-1491911889:13453..13483Clytia hemisphaericaexon
TCONS_00018098-exon-sc0000287-1491911889:3438..3693TCONS_00018098-exon-sc0000287-1491911889:3438..3693Clytia hemisphaericaexon
TCONS_00018098-exon-sc0000287-1491911889:1325..1390TCONS_00018098-exon-sc0000287-1491911889:1325..1390Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000287supercontigsc0000287:1325..13483 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.02862	0.220104	0.879534	0	0	1.24953	0	0	0	0	0.237139	0	0	0	0	0.179673	0	0	0.139077	0.00973427	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018098 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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