TCONS_00018108 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018108
Unique NameTCONS_00018108
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length417

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018108 ID=TCONS_00018108|Name=TCONS_00018108|organism=Clytia hemisphaerica|type=transcript|length=417bp
AGATAACATGAAGCTCTTATTCGTCATTTTGATTCTTCCCTTGGTAATCG
AAGCCATCCCAGTCTACAATACAATCAAATGTTACTGGAATATCAATAAT
CATCGAATACAACGAGCATCATTCACGCTTGGAGGATCATGCTCCTACGT
TGCCAATCAAATCGAAACATGCTGCAAGACATTCTTAAATGGACCTGACA
GAGTTGATATTTGTCAGAAATATGCTTTTATGGTACCAACGTTTCCAAGC
AAAGGTCACTTCACAGTGGTGGCACAGGGAAAAGTTAATTGTCTGCCAAC
AATATGGTCACAGCAAGGAAAGTCAATCTGCTGTACAAAATACGGGACAT
TTGCTACTGCATGTTAAAATAAGATCTTACTTTAATATAACATCAATTTC
TTATTGTTCATAAGAGG
Run BLAST on NCBI

protein sequence of TCONS_00018108-protein

>TCONS_00018108-protein ID=TCONS_00018108-protein|Name=TCONS_00018108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
DNMKLLFVILILPLVIEAIPVYNTIKCYWNINNHRIQRASFTLGGSCSYV
ANQIETCCKTFLNGPDRVDICQKYAFMVPTFPSKGHFTVVAQGKVNCLPT
IWSQQGKSICCTKYGTFATAC
Run BLAST on NCBI

transcript from alignment at sc0000287:86788..87204

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018108 ID=TCONS_00018108|Name=TCONS_00018108|organism=Clytia hemisphaerica|type=transcript|length=417bp|location=Sequence derived from alignment at sc0000287:86788..87204 (Clytia hemisphaerica)
CCTCTTATGAACAATAAGAAATTGATGTTATATTAAAGTAAGATCTTATT
TTAACATGCAGTAGCAAATGTCCCGTATTTTGTACAGCAGATTGACTTTC
CTTGCTGTGACCATATTGTTGGCAGACAATTAACTTTTCCCTGTGCCACC
ACTGTGAAGTGACCTTTGCTTGGAAACGTTGGTACCATAAAAGCATATTT
CTGACAAATATCAACTCTGTCAGGTCCATTTAAGAATGTCTTGCAGCATG
TTTCGATTTGATTGGCAACGTAGGAGCATGATCCTCCAAGCGTGAATGAT
GCTCGTTGTATTCGATGATTATTGATATTCCAGTAACATTTGATTGTATT
GTAGACTGGGATGGCTTCGATTACCAAGGGAAGAATCAAAATGACGAATA
AGAGCTTCATGTTATCT

Coding sequence (CDS) from alignment at sc0000287:86788..87204

>TCONS_00018108 ID=TCONS_00018108|Name=TCONS_00018108|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0000287:86788..87204 (Clytia hemisphaerica)
TTAACATGCAGTAGCAAATGTCCCGTATTTTGTACAGCAGATTGACTTTC
CTTGCTGTGACCATATTGTTGGCAGACAATTAACTTTTCCCTGTGCCACC
ACTGTGAAGTGACCTTTGCTTGGAAACGTTGGTACCATAAAAGCATATTT
CTGACAAATATCAACTCTGTCAGGTCCATTTAAGAATGTCTTGCAGCATG
TTTCGATTTGATTGGCAACGTAGGAGCATGATCCTCCAAGCGTGAATGAT
GCTCGTTGTATTCGATGATTATTGATATTCCAGTAACATTTGATTGTATT
GTAGACTGGGATGGCTTCGATTACCAAGGGAAGAATCAAAATGACGAATA
AGAGCTTCATGTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010159XLOC_010159Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018108-proteinTCONS_00018108-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018108-exon-sc0000287-1491911889:86788..87204TCONS_00018108-exon-sc0000287-1491911889:86788..87204Clytia hemisphaericaexon
TCONS_00018108-exon-sc0000287-1510915933:86788..87204TCONS_00018108-exon-sc0000287-1510915933:86788..87204Clytia hemisphaericaexon
TCONS_00018108-exon-sc0000287-1575043694:86788..87204TCONS_00018108-exon-sc0000287-1575043694:86788..87204Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000287supercontigsc0000287:86788..87204 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.377883	1.15009	0.181763	10.5259	9.64892	0.718664	4.09483	2.07368	0.113596	10.4363	12.1341	19.3706	39.4965	17.0298	20.6047	0	2.2768	4.28774	4.58501	0.195568	1.95579	0	0	0.46776	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top