TCONS_00018109 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018109
Unique NameTCONS_00018109
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length823

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018109 ID=TCONS_00018109|Name=TCONS_00018109|organism=Clytia hemisphaerica|type=transcript|length=823bp
cttgcttcttcaaagggtgccgaattcaaagggaaagaataggaaaacag
cgagcggcagcggcgtttcttatcctcttttcccaaatctctggttggag
cagttgatagtaattatttaaagtatataaagtgattctggaatctgtta
atggacactaaaatgcagctcatgggtaaattcaaactagattgaaCATT
TCTCATGGTTGCAAggcatgaacagtgaaaatNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNAGTTTCCAAGGACAACCtggataaaaaac
aaacatcgAAATAAAGATTCCAAAAAGAAGTTGCATCAAAATCCACTTCG
CCAGAGAACATTTACATAATAGTGTGTATATTGAAATTCCCAATTTTTCA
TTGAACATTCTATTAATAAATATATCGACATCCATTTTTCAAAGGGCATA
CAGGTCCAACCGctcaaatccactttttccataaatataACATCAAACAC
CATATAATTATTATTCCATCCTGCTTCTGTTGAGTCAAATAGATATAATA
CACATAAAGTTTTCATACATCAGTTCCCACTCATCTTTTAGCAGTCCTTT
TCTGCTGGCACTGCAGAGAACAGACGTGACAGTCAACATGTAAAAATGTC
TGAATCTTGAGTCAATCGTCGTTGCATCGGCAACCTGTACTTGGATGGCC
AATACTTCTATGGGATGGTGTTGTTAACAGTATTTCACAAAGAATATGAT
AACTagcctgaaaatatataaaatgtaaATCTGTATATGAAATTACCCTA
ATCCGTTTAAATACAAAATGAAA
Run BLAST on NCBI

transcript from alignment at sc0000287:100558..101380

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018109 ID=TCONS_00018109|Name=TCONS_00018109|organism=Clytia hemisphaerica|type=transcript|length=823bp|location=Sequence derived from alignment at sc0000287:100558..101380 (Clytia hemisphaerica)
TTTCATTTTGTATTTAAACGGATTAGGGTAATTTCATATACAGATttaca
ttttatatattttcaggctAGTTATCATATTCTTTGTGAAATACTGTTAA
CAACACCATCCCATAGAAGTATTGGCCATCCAAGTACAGGTTGCCGATGC
AACGACGATTGACTCAAGATTCAGACATTTTTACATGTTGACTGTCACGT
CTGTTCTCTGCAGTGCCAGCAGAAAAGGACTGCTAAAAGATGAGTGGGAA
CTGATGTATGAAAACTTTATGTGTATTATATCTATTTGACTCAACAGAAG
CAGGATGGAATAATAATTATATGGTGTTTGATGTtatatttatggaaaaa
gtggatttgagCGGTTGGACCTGTATGCCCTTTGAAAAATGGATGTCGAT
ATATTTATTAATAGAATGTTCAATGAAAAATTGGGAATTTCAATATACAC
ACTATTATGTAAATGTTCTCTGGCGAAGTGGATTTTGATGCAACTTCTTT
TTGGAATCTTTATTTcgatgtttgttttttatccaGGTTGTCCTTGGAAA
CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattttcact
gttcatgccTTGCAACCATGAGAAATGttcaatctagtttgaatttaccc
atgagctgcattttagtgtccattaacagattccagaatcactttatata
ctttaaataattactatcaactgctccaaccagagatttgggaaaagagg
ataagaaacgccgctgccgctcgctgttttcctattctttccctttgaat
tcggcaccctttgaagaagcaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010160XLOC_010160Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018109-exon-sc0000287-1491911889:100558..101380TCONS_00018109-exon-sc0000287-1491911889:100558..101380Clytia hemisphaericaexon
TCONS_00018109-exon-sc0000287-1510915933:100558..101380TCONS_00018109-exon-sc0000287-1510915933:100558..101380Clytia hemisphaericaexon
TCONS_00018109-exon-sc0000287-1575043694:100558..101380TCONS_00018109-exon-sc0000287-1575043694:100558..101380Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000287supercontigsc0000287:100558..101380 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.35778	2.57172	3.50901	2.8109	3.25052	3.38472	3.53401	4.03313	3.38025	5.50996	3.0921	2.84386	3.65013	5.03014	3.646	7.35933	2.94745	3.32356	3.66828	5.98817	6.54598	6.29677	3.44748	4.43497	0.538422	1.81633	6.70444	6.25837	10.2072	9.4198
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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