TCONS_00018110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018110
Unique NameTCONS_00018110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018110 ID=TCONS_00018110|Name=TCONS_00018110|organism=Clytia hemisphaerica|type=transcript|length=451bp
TGTACTTTTGCCATTGTTGGTGAATGGAGCTTTTGGGTTCCTGAAGAATG
GTCCCTGGAACTGTCGTAATTTAGCCTGTTTCTTGAAGGAAGGTCAAACA
ATCCACAGCAAAACTCTTAAACACTGGGATGAGAAGACTTGTGGATCCTT
CAGTGGGCTCTCATGTTCGGCTGCTAACGACCGCGTCGCAAGTAAGTGCC
AATCGGATTTCAACAATAATGGTCTCCAACTCCacatttgtaaacaaaaa
gacGCAAGCATCCCAACATATCCGAACAAGTTGACCGTCTGGGTTACCAA
AATGGGGAAGGCTCATTGCATGTCAAATAACGCCAACAACTTTTGGATGG
ATAAGGATCATAATGGCGTTCCAAAACGACGCGCCATTTGCTGCACAAAG
ATTCAGCCAATATTGCCATGGTTACCACTTCAAATTTATAACCTGCCATG
C
Run BLAST on NCBI

protein sequence of TCONS_00018110-protein

>TCONS_00018110-protein ID=TCONS_00018110-protein|Name=TCONS_00018110-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
VLLPLLVNGAFGFLKNGPWNCRNLACFLKEGQTIHSKTLKHWDEKTCGSF
SGLSCSAANDRVASKCQSDFNNNGLQLHICKQKDASIPTYPNKLTVWVTK
MGKAHCMSNNANNFWMDKDHNGVPKRRAICCTKIQPILPWLPLQIYNLPC
Run BLAST on NCBI

transcript from alignment at sc0000287:105014..105464

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018110 ID=TCONS_00018110|Name=TCONS_00018110|organism=Clytia hemisphaerica|type=transcript|length=451bp|location=Sequence derived from alignment at sc0000287:105014..105464 (Clytia hemisphaerica)
GCATGGCAGGTTATAAATTTGAAGTGGTAACCATGGCAATATTGGCTGAA
TCTTTGTGCAGCAAATGGCGCGTCGTTTTGGAACGCCATTATGATCCTTA
TCCATCCAAAAGTTGTTGGCGTTATTTGACATGCAATGAGCCTTCCCCAT
TTTGGTAACCCAGACGGTCAACTTGTTCGGATATGTTGGGATGCTTGCgt
ctttttgtttacaaatgtGGAGTTGGAGACCATTATTGTTGAAATCCGAT
TGGCACTTACTTGCGACGCGGTCGTTAGCAGCCGAACATGAGAGCCCACT
GAAGGATCCACAAGTCTTCTCATCCCAGTGTTTAAGAGTTTTGCTGTGGA
TTGTTTGACCTTCCTTCAAGAAACAGGCTAAATTACGACAGTTCCAGGGA
CCATTCTTCAGGAACCCAAAAGCTCCATTCACCAACAATGGCAAAAGTAC
A

Coding sequence (CDS) from alignment at sc0000287:105014..105464

>TCONS_00018110 ID=TCONS_00018110|Name=TCONS_00018110|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at sc0000287:105014..105464 (Clytia hemisphaerica)
GCATGGCAGGTTATAAATTTGAAGTGGTAACCATGGCAATATTGGCTGAA
TCTTTGTGCAGCAAATGGCGCGTCGTTTTGGAACGCCATTATGATCCTTA
TCCATCCAAAAGTTGTTGGCGTTATTTGACATGCAATGAGCCTTCCCCAT
TTTGGTAACCCAGACGGTCAACTTGTTCGGATATGTTGGGATGCTTGCgt
ctttttgtttacaaatgtGGAGTTGGAGACCATTATTGTTGAAATCCGAT
TGGCACTTACTTGCGACGCGGTCGTTAGCAGCCGAACATGAGAGCCCACT
GAAGGATCCACAAGTCTTCTCATCCCAGTGTTTAAGAGTTTTGCTGTGGA
TTGTTTGACCTTCCTTCAAGAAACAGGCTAAATTACGACAGTTCCAGGGA
CCATTCTTCAGGAACCCAAAAGCTCCATTCACCAACAATGGCAAAAGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010161XLOC_010161Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018110-exon-sc0000287-1491911889:105014..105464TCONS_00018110-exon-sc0000287-1491911889:105014..105464Clytia hemisphaericaexon
TCONS_00018110-exon-sc0000287-1510915933:105014..105464TCONS_00018110-exon-sc0000287-1510915933:105014..105464Clytia hemisphaericaexon
TCONS_00018110-exon-sc0000287-1575043694:105014..105464TCONS_00018110-exon-sc0000287-1575043694:105014..105464Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018110-proteinTCONS_00018110-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000287supercontigsc0000287:105014..105464 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.18621	0.624905	3.1393	2.60978	1.56934	4.55977	0.380202	1.34628	0	1.20944	0	0.446676	0	1.15312	0	0.163077	0.141743	0	0	0.152819	0.787002	0.70238	0	0.214535	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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