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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018127 ID=TCONS_00018127|Name=TCONS_00018127|organism=Clytia hemisphaerica|type=transcript|length=2239bp
aaaataattgaacttgTGATGGTTTCTTCAAATACTTCACGCATTCATTA
GCAGCTTACACTATTCACATGGAAGGATTTTGAAACTGTTCGATCAGACG
TATTAACAGTTAAAAAATAACTCTTCAAGAAAAGCCGAAAACAAAAGGCA
TTTGGTAGAAATAGATTTTGAGTGATCAGAGCTGCAGAGAGAACTTCAAC
AACAACTTTTCACTTGGTTCAATAAACTTCAAGATGACGACATCACCGTC
AGCTTTACAACAAGTTATTGATGAAAAGGAAGATGAAATCAATGTTATGA
GAATCGTCGTTGCTGTATTGGCTGTTGTCGTTTTGTTCCTATTGATCATT
TTGGCATACTGCACGTGCACTAAAAGgaAAAAGCACTCGAGACCAAAGGA
CGTTGAGATGAACAAAACACAAGATGATGACACTGCAAAGGCCAACGGTG
ACCAGAAAAACAACCATCCTTTTCAAGATAAAAACTACAGTGAAATTGAC
GAGAGCGACAATCATAACCACAAGCAAGATATCCCTTCAGTAAAGGTTAC
ACAGGACATACAGGCCCTCTCACAGCCCGATGACCAAGATTCTCTTTATG
AAGCAATGACCGAGGCTACGACTCCAAAAATCACGTCCACGAAACGACAT
AACCAGACATCTGAACGGTATCAGATGAAATTGACATTGAAGCTATGCGT
CGGTTATCAAGATCGAATAGTATGTCTTTGATTAATAGCCGTTCAAGACC
AACCACCCCTACAATCGAAGGTGCAATCAACAGGGTAGAATACTATGAAG
CAATGGGCGATTTTGCTCAGAACCAAAAGCCAGTCACCAAGTCACTATCC
ATGCCTCCAGCTCGACGACAAGTCAGTGAGCCGTACAAAGAACCGATTTA
TTCTGAAGTAAACACGTATGATAGGTCACTATCTGTACCAGCGGCTAAAC
ACCAGAGATCGTGCAGTCTAGACGGTCGACAATCTATACCGAAAGATCTG
TTAGAGAAGAAAAGAATGAGCTTACCACCGCCCGCCAAACCGCCCCGTCG
AAGCAGTCTCAAAAGCAACATTAGCAGTGAGAGTGGAGGAGGAATCATAT
ACTCACAAACATATGAATCAACAAACAGCCTGAGGAGTCTTGACAGCTGT
GACGGTGACTACATCATACCTTCTTCTCGACCAAGTAAAAAAAGAGCCCC
ACCCAAACCTTTGCGAACAAGCACCGAGAATTTGTATTGCGTACCGAAGA
AATTCGATCGGTCGCAGTCGCAAAAACACTTCCGAACTGATGATAAATCA
CAATTGATATTGAACATGGAGAAACAACCAACCCGATCACGATCCGAAAA
ACCGATTCGGGCGACCAAAAGCTCTCCACCAATTGTTGTACAAGATTACG
AAAATTTCGGGTTCGACAAAGAATTTGACAACGGTGAACATACGCATAAT
AATAATTCGACAACGAAAAATGGTAATCATAATATTACTGAGAAAATGGA
TAATCAGTACGTCATACAGACCAGCTATGACGGTTTAGATTATTATGGAG
ATAACGAAGTGTATACCAGAATGGATGGTGATGTTGAAGGGCAAAATACG
AACAGAGAAAGTTCAGTTTATGAGATTGTTTACagatgattttgtttttg
acaaacgaacgaacgacggGATGTGAATTAAGAAAATGGTGATTATCAAT
ATTATGTTGCGAAGAGGGCCGGGCAAAGAAAATTATCAACACGGAAAATT
AATagtttccaatttttaaaaatttcgctcGGATAACTCTTGAATCATCA
TATGACATAATTGGAGTAAAATGATGTTTGGAAAATGAGATTGATAAGGA
TGATACATACATACAGCCGCATGAAGCCTATAGGAGCTTTTTGGAGTGAA
ATTTTCTAATTCTAGATAAATACATTTGATTGCAATGATGATATACATTA
AAAGACTATTACTCAGTATTCTAATGATTAATGtgatcattaaaattttg
gACAACGTTGCAAAAAATAGAACAAATTGATTTGTGTTTCTATAGGAGAA
AGTTAATGACTACAACCACAGTTTtcgattgaaagaaacttttataTGAT
TTCCAAATAAGAGAGGTTCAAAAGGAATATTTGTTTTGTAATTATATTTC
GAGTTAATTGTAACCAATCAGTTGCCTTGGGCTAATTGTTAAGATATTGT
AAATAGCAATATTAATGAAATACGGTAATAAAAAGCCAC Run BLAST on NCBI protein sequence of TCONS_00018127-protein >TCONS_00018127-protein ID=TCONS_00018127-protein|Name=TCONS_00018127-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
MRRLSRSNSMSLINSRSRPTTPTIEGAINRVEYYEAMGDFAQNQKPVTKS
LSMPPARRQVSEPYKEPIYSEVNTYDRSLSVPAAKHQRSCSLDGRQSIPK
DLLEKKRMSLPPPAKPPRRSSLKSNISSESGGGIIYSQTYESTNSLRSLD
SCDGDYIIPSSRPSKKRAPPKPLRTSTENLYCVPKKFDRSQSQKHFRTDD
KSQLILNMEKQPTRSRSEKPIRATKSSPPIVVQDYENFGFDKEFDNGEHT
HNNNSTTKNGNHNITEKMDNQYVIQTSYDGLDYYGDNEVYTRMDGDVEGQ
NTNRESSVYEIVYR Run BLAST on NCBI transcript from alignment at sc0000290:275455..279541+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018127 ID=TCONS_00018127|Name=TCONS_00018127|organism=Clytia hemisphaerica|type=transcript|length=4087bp|location=Sequence derived from alignment at sc0000290:275455..279541+ (Clytia hemisphaerica)
aaaataattgaacttgTGATGGTTTCTTCAAATACTTCACGCATTCATTA
GCAGCTTACACTATTCACATGGAAGGATTTTGAAACTGTTCGATCAGACG
TATTAACAGTTAAAAAATAACTCTTCAAGAAAAGCCGAAAACAAAAGGCA
TTTGGTAGAAATAGATTTTGAGTGATCAGAGCTGCAGAGAGAACTTCAAC
AACAACTTTTCACTTGGTTCAATAAACTTCAAGATGACGACATCACCGTC
AGCTTTACAACAAGTTATTGATGAAAAGGAAGATGAAATCAATGTTATGA
GAATCGTCGTTGCTGTATTGGCTGTTGTCGTTTTGTTCCTATTGATCATT
TTGGCATACTGCACGTGCACTAAAAGGTCAGTAAGCTAGGGTTATGATtg
gtttttaaaaatcaattctGACTTTGAAGTTGAGAGGGAATTTAATTAGa
cttcaaataaattttttttgcatacaTTAGTAGAGTCTCCACAACTTGAA
CCTCTCTTACTTGAACGTCTTCTTAAATCGAACGAATTCAATGGCACCTT
GAAAAATTCCTAATAAACTCTTAAAATTTAAAGTATAAAGCAACTAAATC
GCACTGTTTTTGTATTTCACCAGCCCAGCAAGACTACGTACTTAATATAC
TGTTCTAGGTTCATTTAGCAAATAAGGgagaaactttgaaaaaacttgaa
aacctCCATTACTCCAATGACTTCACAACTCGAGACTCTgtacattttca
ggatttggATAGTCAGGGTGGCCTTGATTGCTCTTACGAATAATAAAACT
GTTCAAAAATCCATTTTTCTCATGAAGGTACTTCAAGCTGAAGTTTGGCT
TCTGAAGTAAAAGtcttaatgaaaatttttactcCAATTTTCTCCAATGC
AAATCTTCGGAAAAAAAACGGGAATCTCGTAACTAAAAAAAACCTAATAT
AGTGCTAAAGCGTATTGTCGTTGAAGTTGAACCAAACGAAATGTAGcgga
aaatacaaaattgtaaaatttgaccAATTAATTGAGTGATTTTTCTTTCA
TTAATCAAACCCAACCCCTTAAATAGACTAATTTGTATCAGCTTGTTGAG
CTACAATGGTATTCTATAATGAACGTACATGGAAACAAAGTTGTTGTAAG
ATCCTACCTATCCAGAAAGTTACTGAAATAGTTTAGCAAAAGGTTTGAAG
CATGAAATTTCCATTTGACCCAACTAATTTTTATGCTTATGCACAAAAAT
ACAAATTGTAAATCTAATTCTTCAATGGATAAGAAAAGcttatttttttc
gtttttcaggaAAAAGCACTCGAGACCAAAGGACGTTGAGATGAACAAAA
CACAAGATGATGACACTGCAAAGGCCAACGGTGACCAGAAAAACAACCAT
CCTTTTCAAGATAAAAACTACAGTGAAATTGACGAGAGCGACAATCATAA
CCACAAGCAAGATATCCCTTCAGTAAAGGTTACACAGGACATACAGGCCC
TCTCACAGCCCGATGACCAAGATTCTCTTTATGAAGCAATGACCGAGGCT
ACGACTCCAAAAATCACGTCCACGAAACGACATAACCAGACATCTGAACG
GTATCAGATGAAATTGACATTGAAGCTATGCGTCGGTTATCAAGATCGAA
TAGTATGTCTTTGATTAATAGCCGTTCAAGACCAACCACCCCTACAATCG
AAGGTGCAATCAACAGGGTAGAATACTATGAAGCAATGGGCGATTTTGCT
CAGAACCAAAAGCCAGTCACCAAGTCACTATCCATGCCTCCAGCTCGACG
ACAAGTCAGTGAGCCGTACAAAGAACCGATTTATTCTGAAGTAAACACGT
ATGATAGGTCACTATCTGTACCAGCGGCTAAACACCAGAGATCGTGCAGT
CTAGACGGTCGACAATCTATACCGAAAGATCTGTTAGAGAAGAAAAGAAT
GAGCTTACCACCGCCCGCCAAACCGCCCCGTCGAAGCAGTCTCAAAAGCA
ACATTAGCAGTGAGAGTGGAGGAGGAATCATATACTCACAAACATATGAA
TCAACAAACAGCCTGAGGAGTCTTGACAGCTGTGACGGTGACTACATCAT
ACCTTCTTCTCGACCAAGTAAAAAAAGAGCCCCACCCAAACCTTTGCGAA
CAAGCACCGAGAATTTGTATTGCGTACCGAAGAAATTCGATCGGTCGCAG
TCGCAAAAACACTTCCGAACTGATGATAAATCACAATTGATATTGAACAT
GGAGAAACAACCAACCCGATCACGATCCGAAAAACCGATTCGGGCGACCA
AAAGCTCTCCACCAATTGTTGTACAAGATTACGAAAATTTCGGGTTCGAC
AAAGAATTTGACAACGGTGAACATACGCATAATAATAATTCGACAACGAA
AAATGGTAATCATAATATTACTGAGAAAATGGATAATCAGTACGTCATAC
AGACCAGCTATGACGGTTTAGATTATTATGGAGATAACGAAGTGTATACC
AGAATGGATGGTGATGTTGAAGGGCAAAATACGAACAGAGAAAGTTCAGT
TTATGAGATTGTTTACagatgattttgtttttgacaaacgaacgaacgac
ggGATGTGAATTAAGAAAATGGTGATTATCAATATTATGTTGCGAAGAGG
GCCGGGCAAAGAAAATTATCAACACGGAAAATTAATagtttccaattttt
aaaaatttcgctcGGATAACTCTTGAATCATCATATGACATAATTGGAGT
AAAATGATGTTTGGAAAATGAGATTGATAAGGATGATACATACATACAGC
CGCATGAAGCCATTTTTTAGTAGTCCATGTACTATAGGAGCTTTTTGGAG
TGAAATTTTCTAATTCTAGATAAATACATTTGATTGCAATGATGATATAC
ATTAAAAGACTATTAGTCAGTATTCTAATGATTAATGtgatcattaaaat
tttggCTAGATGACAACGTTGCAAAAAATAGAACGAATTGATTTGTGTTT
CTATAGGAGAAAGTTAATGACTACAACCACAGTTTtcgattgaaagaaac
ttttttatgatttccaaataAGAGAGGTTCAaaaggaatatttttttttg
taattatatTTCGAGTTAATTGTAACCAGTCAGTTGCCTTGGGCTAATTG
TTAAGATATTGTAAATAGCACTATTAATGAAATACGGTAATAAAAAGCCA
CTGTTTCGAATCGATTTCCATGAATTGANGAATTTCGGGTTCGACAAAGA
ATTTGACAACGGTGAACATACGCATAATAATAATTCGACAAGGAAAAATG
GTAATCATAATATTACTGAGAAAATGGATAATCAGTACGTCATACAGACC
AGCTATGAGGGTTTAGATTATTATGGAGATAACGAAGTGTATACCAGAAT
GGATGGTGATGTTGAAGTGCAAAATACGAACAGAGAAAGTTCAGTTTATG
AGATTGTTTACagatgattttgtttttgacaaACGAATGAACGACGGGAT
GTGAATTAAGAAAATGGTGATTATCAATATTATGTTGCGAAGAGGGCCGG
GCAAAGAAAATTATCAACACGGAAAATGAATagtttccaatttttaaaaa
tttcactcGAATAACTCTTGAATCATCATATGACATAATTGGAGTAAAAT
GATGTTTGGAAAATGAGAATGATAAGGATGATACATACATACAGCCGCAT
GAAACCATTTTTAGTAGTCCATGTACTATAGGAGCTTTTTGGAGTGAAAT
TTTCTAATTCTAGATAAATACATTTGATTGCAATGATGATATACATTAAA
AGACTATTACTCAGTATTCTAATGATTAATGtgatcattaaaattttggA
CAACGTTGCAAAAAATAGAACAAATTGATTTGTGTTTCTATAGGAGAAAG
TTAATGACTACAACCACAGTTTtcgattgaaagaaacttttataTGATTT
CCAAATAAGAGAGGTTCAAAAGGAATATTTGTTTTGTAATTATATTTCGA
GTTAATTGTAACCAATCAGTTGCCTTGGGCTAATTGTTAAGATATTGTAA
ATAGCAATATTAATGAAATACGGTAATAAAAAGCCAC Coding sequence (CDS) from alignment at sc0000290:275455..279541+ >TCONS_00018127 ID=TCONS_00018127|Name=TCONS_00018127|organism=Clytia hemisphaerica|type=CDS|length=945bp|location=Sequence derived from alignment at sc0000290:275455..279541+ (Clytia hemisphaerica)
ATGCGTCGGTTATCAAGATCGAATAGTATGTCTTTGATTAATAGCCGTTC
AAGACCAACCACCCCTACAATCGAAGGTGCAATCAACAGGGTAGAATACT
ATGAAGCAATGGGCGATTTTGCTCAGAACCAAAAGCCAGTCACCAAGTCA
CTATCCATGCCTCCAGCTCGACGACAAGTCAGTGAGCCGTACAAAGAACC
GATTTATTCTGAAGTAAACACGTATGATAGGTCACTATCTGTACCAGCGG
CTAAACACCAGAGATCGTGCAGTCTAGACGGTCGACAATCTATACCGAAA
GATCTGTTAGAGAAGAAAAGAATGAGCTTACCACCGCCCGCCAAACCGCC
CCGTCGAAGCAGTCTCAAAAGCAACATTAGCAGTGAGAGTGGAGGAGGAA
TCATATACTCACAAACATATGAATCAACAAACAGCCTGAGGAGTCTTGAC
AGCTGTGACGGTGACTACATCATACCTTCTTCTCGACCAAGTAAAAAAAG
AGCCCCACCCAAACCTTTGCGAACAAGCACCGAGAATTTGTATTGCGTAC
CGAAGAAATTCGATCGGTCGCAGTCGCAAAAACACTTCCGAACTGATGAT
AAATCACAATTGATATTGAACATGGAGAAACAACCAACCCGATCACGATC
CGAAAAACCGATTCGGGCGACCAAAAGCTCTCCACCAATTGTTGTACAAG
ATTACGAAAATTTCGGGTTCGACAAAGAATTTGACAACGGTGAACATACG
CATAATAATAATTCGACAACGAAAAATGGTAATCATAATATTACTGAGAA
AATGGATAATCAGTACGTCATACAGACCAGCTATGACGGTTTAGATTATT
ATGGAGATAACGAAGTGTATACCAGAATGGATGGTGATGTTGAAGGGCAA
AATACGAACAGAGAAAGTTCAGTTTATGAGATTGTTTACagatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018127-exon-sc0000290-1491911889:275455..275830 | TCONS_00018127-exon-sc0000290-1491911889:275455..275830 | Clytia hemisphaerica | exon |
| TCONS_00018127-exon-sc0000290-1510915933:275455..275830 | TCONS_00018127-exon-sc0000290-1510915933:275455..275830 | Clytia hemisphaerica | exon |
| TCONS_00018127-exon-sc0000290-1575043694:275455..275830 | TCONS_00018127-exon-sc0000290-1575043694:275455..275830 | Clytia hemisphaerica | exon |
| TCONS_00018127-exon-sc0000290-1491911889:276764..278265 | TCONS_00018127-exon-sc0000290-1491911889:276764..278265 | Clytia hemisphaerica | exon |
| TCONS_00018127-exon-sc0000290-1510915933:276764..278265 | TCONS_00018127-exon-sc0000290-1510915933:276764..278265 | Clytia hemisphaerica | exon |
| TCONS_00018127-exon-sc0000290-1575043694:276764..278265 | TCONS_00018127-exon-sc0000290-1575043694:276764..278265 | Clytia hemisphaerica | exon |
| TCONS_00018127-exon-sc0000290-1491911889:279181..279541 | TCONS_00018127-exon-sc0000290-1491911889:279181..279541 | Clytia hemisphaerica | exon |
| TCONS_00018127-exon-sc0000290-1510915933:279181..279541 | TCONS_00018127-exon-sc0000290-1510915933:279181..279541 | Clytia hemisphaerica | exon |
| TCONS_00018127-exon-sc0000290-1575043694:279181..279541 | TCONS_00018127-exon-sc0000290-1575043694:279181..279541 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000290 | supercontig | sc0000290:275455..279541 + |
Blast
The following BLAST results are available for this feature:
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