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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018128 ID=TCONS_00018128|Name=TCONS_00018128|organism=Clytia hemisphaerica|type=transcript|length=2258bp
aaataattgaacttgTGATGGTTTCTTCAAATACTTCACGCATTCATTAG
CAGCTTACACTATTCACATGGAAGGATTTTGAAACTGTTCGATCAGACGT
ATTAACAGTTAAAAAATAACTCTTCAAGAAAAGCCGAAAACAAAAGGCAT
TTGGTAGAAATAGATTTTGAGTGATCAGAGCTGCAGAGAGAACTTCAACA
ACAACTTTTCACTTGGTTCAATAAACTTCAAGATGACGACATCACCGTCA
GCTTTACAACAAGTTATTGATGAAAAGGAAGATGAAATCAATGTTATGAG
AATCGTCGTTGCTGTATTGGCTGTTGTCGTTTTGTTCCTATTGATCATTT
TGGCATACTGCACGTGCACTAAAAGgaAAAAGCACTCGAGACCAAAGGAC
GTTGAGATGAACAAAACACAAGATGATGACACTGCAAAGGCCAACGGTGA
CCAGAAAAACAACCATCCTTTTCAAGATAAAAACTACAGTGAAATTGACG
AGAGCGACAATCATAACCACAAGCAAGATATCCCTTCAGTAAAGGTTACA
CAGGACATACAGGCCCTCTCACAGCCCGATGACCAAGATTCTCTTTATGA
AGCAATGACCGAGGCTACGACTCCAAAAATCACGTCCACGAAACGACATA
ACCAGACATCTGAACGGTATCAGATGAAATTGACATTGAAGCTATGCGTC
GGTTATCAAGATCGAATAGTATGTCTTTGATTAATAGCCGTTCAAGACCA
ACCACCCCTACAATCGAAGGTGCAATCAACAGGGTAGAATACTATGAAGC
AATGGGCGATTTTGCTCAGAACCAAAAGCCAGTCACCAAGTCACTATCCA
TGCCTCCAGCTCGACGACAAGTCAGTGAGCCGTACAAAGAACCGATTTAT
TCTGAAGTAAACACGTATGATAGGTCACTATCTGTACCAGCGGCTAAACA
CCAGAGATCGTGCAGTCTAGACGGTCGACAATCTATACCGAAAGATCTGT
TAGAGAAGAAAAGAATGAGCTTACCACCGCCCGCCAAACCGCCCCGTCGA
AGCAGTCTCAAAAGCAACATTAGCAGTGAGAGTGGAGGAGGAATCATATA
CTCACAAACATATGAATCAACAAACAGCCTGAGGAGTCTTGACAGCTGTG
ACGGTGACTACATCATACCTTCTTCTCGACCAAGTAAAAAAAGAGCCCCA
CCCAAACCTTTGCGAACAAGCACCGAGAATTTGTATTGCGTACCGAAGAA
ATTCGATCGGTCGCAGTCGCAAAAACACTTCCGAACTGATGATAAATCAC
AATTGATATTGAACATGGAGAAACAACCAACCCGATCACGATCCGAAAAA
CCGATTCGGGCGACCAAAAGCTCTCCACCAATTGTTGTACAAGATTACGA
AAATTTCGGGTTCGACAAAGAATTTGACAACGGTGAACATACGCATAATA
ATAATTCGACAAGGAAAAATGGTAATCATAATATTACTGAGAAAATGGAT
AATCAGTACGTCATACAGACCAGCTATGAGGGTTTAGATTATTATGGAGA
TAACGAAGTGTATACCAGAATGGATGGTGATGTTGAAGTGCAAAATACGA
ACAGAGAAAGTTCAGTTTATGAGATTGTTTACagatgattttgtttttga
caaACGAATGAACGACGGGATGTGAATTAAGAAAATGGTGATTATCAATA
TTATGTTGCGAAGAGGGCCGGGCAAAGAAAATTATCAACACGGAAAATGA
ATagtttccaatttttaaaaatttcactcGAATAACTCTTGAATCATCAT
ATGACATAATTGGAGTAAAATGATGTTTGGAAAATGAGAATGATAAGGAT
GATACATACATACAGCCGCATGAAACCATTTTTAGTAGTCCATGTACTAT
AGGAGCTTTTTGGAGTGAAATTTTCTAATTCTAGATAAATACATTTGATT
GCAATGATGATATACATTAAAAGACTATTACTCAGTATTCTAATGATTAA
TGtgatcattaaaattttggACAACGTTGCAAAAAATAGAACAAATTGAT
TTGTGTTTCTATAGGAGAAAGTTAATGACTACAACCACAGTTTtcgattg
aaagaaacttttataTGATTTCCAAATAAGAGAGGTTCAAAAGGAATATT
TGTTTTGTAATTATATTTCGAGTTAATTGTAACCAATCAGTTGCCTTGGG
CTAATTGTTAAGATATTGTAAATAGCAATATTAATGAAATACGGTAATAA
AAAGCCAC Run BLAST on NCBI transcript from alignment at sc0000290:275456..279541+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018128 ID=TCONS_00018128|Name=TCONS_00018128|organism=Clytia hemisphaerica|type=transcript|length=4086bp|location=Sequence derived from alignment at sc0000290:275456..279541+ (Clytia hemisphaerica)
aaataattgaacttgTGATGGTTTCTTCAAATACTTCACGCATTCATTAG
CAGCTTACACTATTCACATGGAAGGATTTTGAAACTGTTCGATCAGACGT
ATTAACAGTTAAAAAATAACTCTTCAAGAAAAGCCGAAAACAAAAGGCAT
TTGGTAGAAATAGATTTTGAGTGATCAGAGCTGCAGAGAGAACTTCAACA
ACAACTTTTCACTTGGTTCAATAAACTTCAAGATGACGACATCACCGTCA
GCTTTACAACAAGTTATTGATGAAAAGGAAGATGAAATCAATGTTATGAG
AATCGTCGTTGCTGTATTGGCTGTTGTCGTTTTGTTCCTATTGATCATTT
TGGCATACTGCACGTGCACTAAAAGGTCAGTAAGCTAGGGTTATGATtgg
tttttaaaaatcaattctGACTTTGAAGTTGAGAGGGAATTTAATTAGac
ttcaaataaattttttttgcatacaTTAGTAGAGTCTCCACAACTTGAAC
CTCTCTTACTTGAACGTCTTCTTAAATCGAACGAATTCAATGGCACCTTG
AAAAATTCCTAATAAACTCTTAAAATTTAAAGTATAAAGCAACTAAATCG
CACTGTTTTTGTATTTCACCAGCCCAGCAAGACTACGTACTTAATATACT
GTTCTAGGTTCATTTAGCAAATAAGGgagaaactttgaaaaaacttgaaa
acctCCATTACTCCAATGACTTCACAACTCGAGACTCTgtacattttcag
gatttggATAGTCAGGGTGGCCTTGATTGCTCTTACGAATAATAAAACTG
TTCAAAAATCCATTTTTCTCATGAAGGTACTTCAAGCTGAAGTTTGGCTT
CTGAAGTAAAAGtcttaatgaaaatttttactcCAATTTTCTCCAATGCA
AATCTTCGGAAAAAAAACGGGAATCTCGTAACTAAAAAAAACCTAATATA
GTGCTAAAGCGTATTGTCGTTGAAGTTGAACCAAACGAAATGTAGcggaa
aatacaaaattgtaaaatttgaccAATTAATTGAGTGATTTTTCTTTCAT
TAATCAAACCCAACCCCTTAAATAGACTAATTTGTATCAGCTTGTTGAGC
TACAATGGTATTCTATAATGAACGTACATGGAAACAAAGTTGTTGTAAGA
TCCTACCTATCCAGAAAGTTACTGAAATAGTTTAGCAAAAGGTTTGAAGC
ATGAAATTTCCATTTGACCCAACTAATTTTTATGCTTATGCACAAAAATA
CAAATTGTAAATCTAATTCTTCAATGGATAAGAAAAGcttatttttttcg
tttttcaggaAAAAGCACTCGAGACCAAAGGACGTTGAGATGAACAAAAC
ACAAGATGATGACACTGCAAAGGCCAACGGTGACCAGAAAAACAACCATC
CTTTTCAAGATAAAAACTACAGTGAAATTGACGAGAGCGACAATCATAAC
CACAAGCAAGATATCCCTTCAGTAAAGGTTACACAGGACATACAGGCCCT
CTCACAGCCCGATGACCAAGATTCTCTTTATGAAGCAATGACCGAGGCTA
CGACTCCAAAAATCACGTCCACGAAACGACATAACCAGACATCTGAACGG
TATCAGATGAAATTGACATTGAAGCTATGCGTCGGTTATCAAGATCGAAT
AGTATGTCTTTGATTAATAGCCGTTCAAGACCAACCACCCCTACAATCGA
AGGTGCAATCAACAGGGTAGAATACTATGAAGCAATGGGCGATTTTGCTC
AGAACCAAAAGCCAGTCACCAAGTCACTATCCATGCCTCCAGCTCGACGA
CAAGTCAGTGAGCCGTACAAAGAACCGATTTATTCTGAAGTAAACACGTA
TGATAGGTCACTATCTGTACCAGCGGCTAAACACCAGAGATCGTGCAGTC
TAGACGGTCGACAATCTATACCGAAAGATCTGTTAGAGAAGAAAAGAATG
AGCTTACCACCGCCCGCCAAACCGCCCCGTCGAAGCAGTCTCAAAAGCAA
CATTAGCAGTGAGAGTGGAGGAGGAATCATATACTCACAAACATATGAAT
CAACAAACAGCCTGAGGAGTCTTGACAGCTGTGACGGTGACTACATCATA
CCTTCTTCTCGACCAAGTAAAAAAAGAGCCCCACCCAAACCTTTGCGAAC
AAGCACCGAGAATTTGTATTGCGTACCGAAGAAATTCGATCGGTCGCAGT
CGCAAAAACACTTCCGAACTGATGATAAATCACAATTGATATTGAACATG
GAGAAACAACCAACCCGATCACGATCCGAAAAACCGATTCGGGCGACCAA
AAGCTCTCCACCAATTGTTGTACAAGATTACGAAAATTTCGGGTTCGACA
AAGAATTTGACAACGGTGAACATACGCATAATAATAATTCGACAACGAAA
AATGGTAATCATAATATTACTGAGAAAATGGATAATCAGTACGTCATACA
GACCAGCTATGACGGTTTAGATTATTATGGAGATAACGAAGTGTATACCA
GAATGGATGGTGATGTTGAAGGGCAAAATACGAACAGAGAAAGTTCAGTT
TATGAGATTGTTTACagatgattttgtttttgacaaacgaacgaacgacg
gGATGTGAATTAAGAAAATGGTGATTATCAATATTATGTTGCGAAGAGGG
CCGGGCAAAGAAAATTATCAACACGGAAAATTAATagtttccaattttta
aaaatttcgctcGGATAACTCTTGAATCATCATATGACATAATTGGAGTA
AAATGATGTTTGGAAAATGAGATTGATAAGGATGATACATACATACAGCC
GCATGAAGCCATTTTTTAGTAGTCCATGTACTATAGGAGCTTTTTGGAGT
GAAATTTTCTAATTCTAGATAAATACATTTGATTGCAATGATGATATACA
TTAAAAGACTATTAGTCAGTATTCTAATGATTAATGtgatcattaaaatt
ttggCTAGATGACAACGTTGCAAAAAATAGAACGAATTGATTTGTGTTTC
TATAGGAGAAAGTTAATGACTACAACCACAGTTTtcgattgaaagaaact
tttttatgatttccaaataAGAGAGGTTCAaaaggaatatttttttttgt
aattatatTTCGAGTTAATTGTAACCAGTCAGTTGCCTTGGGCTAATTGT
TAAGATATTGTAAATAGCACTATTAATGAAATACGGTAATAAAAAGCCAC
TGTTTCGAATCGATTTCCATGAATTGANGAATTTCGGGTTCGACAAAGAA
TTTGACAACGGTGAACATACGCATAATAATAATTCGACAAGGAAAAATGG
TAATCATAATATTACTGAGAAAATGGATAATCAGTACGTCATACAGACCA
GCTATGAGGGTTTAGATTATTATGGAGATAACGAAGTGTATACCAGAATG
GATGGTGATGTTGAAGTGCAAAATACGAACAGAGAAAGTTCAGTTTATGA
GATTGTTTACagatgattttgtttttgacaaACGAATGAACGACGGGATG
TGAATTAAGAAAATGGTGATTATCAATATTATGTTGCGAAGAGGGCCGGG
CAAAGAAAATTATCAACACGGAAAATGAATagtttccaatttttaaaaat
ttcactcGAATAACTCTTGAATCATCATATGACATAATTGGAGTAAAATG
ATGTTTGGAAAATGAGAATGATAAGGATGATACATACATACAGCCGCATG
AAACCATTTTTAGTAGTCCATGTACTATAGGAGCTTTTTGGAGTGAAATT
TTCTAATTCTAGATAAATACATTTGATTGCAATGATGATATACATTAAAA
GACTATTACTCAGTATTCTAATGATTAATGtgatcattaaaattttggAC
AACGTTGCAAAAAATAGAACAAATTGATTTGTGTTTCTATAGGAGAAAGT
TAATGACTACAACCACAGTTTtcgattgaaagaaacttttataTGATTTC
CAAATAAGAGAGGTTCAAAAGGAATATTTGTTTTGTAATTATATTTCGAG
TTAATTGTAACCAATCAGTTGCCTTGGGCTAATTGTTAAGATATTGTAAA
TAGCAATATTAATGAAATACGGTAATAAAAAGCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018128-exon-sc0000290-1491911889:275456..275830 | TCONS_00018128-exon-sc0000290-1491911889:275456..275830 | Clytia hemisphaerica | exon |
| TCONS_00018128-exon-sc0000290-1510915933:275456..275830 | TCONS_00018128-exon-sc0000290-1510915933:275456..275830 | Clytia hemisphaerica | exon |
| TCONS_00018128-exon-sc0000290-1575043694:275456..275830 | TCONS_00018128-exon-sc0000290-1575043694:275456..275830 | Clytia hemisphaerica | exon |
| TCONS_00018128-exon-sc0000290-1491911889:276764..277826 | TCONS_00018128-exon-sc0000290-1491911889:276764..277826 | Clytia hemisphaerica | exon |
| TCONS_00018128-exon-sc0000290-1510915933:276764..277826 | TCONS_00018128-exon-sc0000290-1510915933:276764..277826 | Clytia hemisphaerica | exon |
| TCONS_00018128-exon-sc0000290-1575043694:276764..277826 | TCONS_00018128-exon-sc0000290-1575043694:276764..277826 | Clytia hemisphaerica | exon |
| TCONS_00018128-exon-sc0000290-1491911889:278722..279541 | TCONS_00018128-exon-sc0000290-1491911889:278722..279541 | Clytia hemisphaerica | exon |
| TCONS_00018128-exon-sc0000290-1510915933:278722..279541 | TCONS_00018128-exon-sc0000290-1510915933:278722..279541 | Clytia hemisphaerica | exon |
| TCONS_00018128-exon-sc0000290-1575043694:278722..279541 | TCONS_00018128-exon-sc0000290-1575043694:278722..279541 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000290 | supercontig | sc0000290:275456..279541 + |
Blast
The following BLAST results are available for this feature:
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