TCONS_00018132 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018132
Unique NameTCONS_00018132
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018132 ID=TCONS_00018132|Name=TCONS_00018132|organism=Clytia hemisphaerica|type=transcript|length=576bp
TAAGACTACATTCATATTGGAAGAcacttttatttgctttttggGCCTAC
CTAGAGGATTTAGTTTTTGTGCATAGATGAACATGCGACGTGGAAAAGGG
AAAGGAGTTGGCCAAGGCTCTACACTTAAGCAAACTTCTTAGATGGGATT
TGGCTTTTGTGGCTTGATGAACATTCAACGTGGAAAAAGAAACAGTTGGT
CAAGGCTCTACACTTAAGAAAACTTCTTGGATGGccaaaaatttgaacaa
atctATCATATTGTTGTCAGTCGCACCTTGGAAACAGAAGCTTTCATCTT
CTCAgttggaaaaagttccaccggggctttgaTGTAGCTGCGTATGTTTC
AAATTCGATACATGGTTTCCATCGATTATGCTGACTGCATGGTTCGCACA
GCAAACGGATTCAAATTAACTTCTATCAGCAACAGACCGGTCATAAAAGA
CCTATTAATTGCACCACTTGGGAATTCACCTTACTGTGAGAAAAGGTCGC
TTGATCTTGacatcaacaaaaacaacatatAAATTATGAATTTGGATATG
TCACGCAAAGTTCATCGCGAATCAAA
Run BLAST on NCBI

transcript from alignment at sc0000290:32817..35370-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018132 ID=TCONS_00018132|Name=TCONS_00018132|organism=Clytia hemisphaerica|type=transcript|length=2554bp|location=Sequence derived from alignment at sc0000290:32817..35370- (Clytia hemisphaerica)
TAAGACTACATTCATATTGGAAGACACTTTTATTTGCTTTTTGGGCCTAC
CTAGAGGTACTATAAATTAACCTGTGTTCGTCCGTTCGTATGAATTTTGT
GATTTTTCTGAACAAAACCAGGCTTTTTTTGTTTCGAGCGTAACACTCTT
ACTCTTTGGAATTTAGAGAGTTTCAAACCTACTTACGCATTAAGCCAACA
TCTGTGTTTTAAACATTCTTTTACTTGACCCAGTGCTGAAGTTAAATCTT
AGATGAAATCTATATAAATCACAATTTTCAGGATTTAGTTTTTGTGCATA
GATGAACATGCGACGTGGAAAAGGGAAAGGAGTTGGCCAAGGCTCTACAC
TTAAGCAAACTTCTTAGATGGGTAAGACTTCATCTTGAAAGATATTTTAT
TGAACTTTCATGTTGATATCAATTGCTTTTTCCGAACNATCATCTTGAAA
GATATTTTATTGAACTTTCATTGATATCAATTGCCTTTTCTGAACAAAAC
TAGTCCACCTTTGTTTCGAGCGTAAAACTCTTACTCTTTGGGATATAGTG
AGTTTCAAACCTATGCATTAAAGCCAATCATCTGTGTTTTAAACATCCTT
TTACTTGACCCAGTGCTGAAGTTAAATCTTAAACGAAATCTATATAAATC
ACAATTTTCAGGATTTGGCTTTTGTGGCTTGATGAACATTCAACGTGGAA
AAAGAAACAGTTGGTCAAGGCTCTACACTTAAGAAAACTTCTTGGATGGG
TAAGACTTCATTCATCATTATTTTTTAATAAAACTAGGCTACGTCATATT
CCCCTTTGTTTCGAACGTAAACTCCTACATACTCTTCAAAACTAAGGTCT
AAAAAACTAGGAGCTGTGTATTGTGTAGACTAGAACAAAAACGAAAACGT
TGAAAAATATCACCATAACCAGGCTTAAGAAACAGCATCGAACAAAATGG
ATAAACTTAATACCTCGTAAAATGTTCTCATTCCATGAAAAAAGTAATAG
TAGTTGCAAAACCTTTTAATCAAACCCAGGTAACTTACTCTTAGATTTGA
CAGACGTGATGAATGGTATGCAAAGCAAATTTTGGATGACCGGAAGCTAA
GAACTTAAAGTAAGAACTTGTTGTTATCTATTTTCAGCCAAAAATTTGAA
CAAATCTATCATATTGTTGTCAGTCGCACCTTGGAAACAGAAGCTTTCAT
CTTCTCAGTTGGAAAAAGTTCCACCGGGGCTTTGATGTAGCTGCGTATGT
TTCAAATTCGATACATGGTAATAAAAAATGCCTATCAGATTTTGTATAAG
GTTTTTCATTCCTGTTGATTCATATAGTTTGACATCTTTTTATAAGAAAC
TCAATTTTAGCTTCCGTCCTGCTTTTTCTTAGCTTTCTAGCTCTATGTTT
GAAAAATTTGGTGCGATCACCCCTGACATTATATCATTTTTATGTTTATT
TGGTTAGGAGCTGTCGTTTGCCATGGTTAGATTTAAAAAATTCTATTACG
AGATGATAAAAAAAAAATGGCTAATTTCAGAGCTCAAGCCTAAGCAGTCT
AGTTGCTTATAAGAAAAAGAAGTGTGTTCTTTCCTGTCTTTTTCCCTTTT
TAATAGAAAGGAAAACACAATGTATCGGACAGTTTTGGACACATTTAGCA
ATCAAACTTGTCTACCATTTTGTCTGTGATGATACCAAAAATAATTTTAG
TGTCTTTATTCAGCTTTACTAAAACGGTCTAATTGTTGTCTTATACTAGG
TTTCCATCGATTATGCTGACTGCATGGTTCGCACAGCAAACGGATTCAAA
TTAACTTCTATCAGCAACAGACCGGTCATAAAAGACCTATTAATTGCACC
ACTTGGGAATTCACCTTACTGTGAGAAAAGGTAAGGCAATACTTACATGA
TTTCACTTTTTATCCGTGATATTCGAGACGTAAGGTTTTATACGGAAGCA
CACATTGAACTTTTGAACTCGAAAAGTAAAACTAGTTGCAAACGTCTGGG
CTAGTTTTGAGTGTTTCCGTATAAAACATTACGTCATGAATATAATAACT
GTTGAGTAATGAGACTTAATAAAACTGACGTTATAAATGGGAAATCTCTC
GACTAAACCAAAAATGAAATAATTCATCAAAAGCATATTTTCTGTGTGTC
AGAAGTTTAATCCCAATTTCACGAGCATTCTTACTAATCGTTGTCTAGTG
AGGGATTTGCATTTTAGTTGAGAAAAGAAGGTAAAATAATTGTCAACAAA
ACCCATGTCTTTACTCCGAAAGATTCATGATAGGCACCGTTGCAATGTCT
TCCACGGACTCAACAACTAATTGGTCACAAGTGACCTATTGATCGATTTT
ACTTCACGACCAATCAGCTGTCGAGTCTGTGATGTAATGTCAAAAGACAT
TACAACGGCGCATATCATCAAATGTAATTGTTAACAAATCTTGATCATGA
TGAAGTATTTCTCTCATTTTCAGGTCGCTTGATCTTGACATCAACAAAAA
CAACATATAAATTATGAATTTGGATATGTCACGCAAAGTTCATCGCGAAT
CAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010181XLOC_010181Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018132-exon-sc0000290-1575043694:35315..35370TCONS_00018132-exon-sc0000290-1575043694:35315..35370Clytia hemisphaericaexon
TCONS_00018132-exon-sc0000290-1575043694:35000..35089TCONS_00018132-exon-sc0000290-1575043694:35000..35089Clytia hemisphaericaexon
TCONS_00018132-exon-sc0000290-1575043694:34622..34709TCONS_00018132-exon-sc0000290-1575043694:34622..34709Clytia hemisphaericaexon
TCONS_00018132-exon-sc0000290-1575043694:34104..34233TCONS_00018132-exon-sc0000290-1575043694:34104..34233Clytia hemisphaericaexon
TCONS_00018132-exon-sc0000290-1575043694:33491..33621TCONS_00018132-exon-sc0000290-1575043694:33491..33621Clytia hemisphaericaexon
TCONS_00018132-exon-sc0000290-1575043694:32817..32897TCONS_00018132-exon-sc0000290-1575043694:32817..32897Clytia hemisphaericaexon
TCONS_00018132-exon-sc0000290-1510915933:35315..35370TCONS_00018132-exon-sc0000290-1510915933:35315..35370Clytia hemisphaericaexon
TCONS_00018132-exon-sc0000290-1510915933:35000..35089TCONS_00018132-exon-sc0000290-1510915933:35000..35089Clytia hemisphaericaexon
TCONS_00018132-exon-sc0000290-1510915933:34622..34709TCONS_00018132-exon-sc0000290-1510915933:34622..34709Clytia hemisphaericaexon
TCONS_00018132-exon-sc0000290-1510915933:34104..34233TCONS_00018132-exon-sc0000290-1510915933:34104..34233Clytia hemisphaericaexon
TCONS_00018132-exon-sc0000290-1510915933:33491..33621TCONS_00018132-exon-sc0000290-1510915933:33491..33621Clytia hemisphaericaexon
TCONS_00018132-exon-sc0000290-1510915933:32817..32897TCONS_00018132-exon-sc0000290-1510915933:32817..32897Clytia hemisphaericaexon
TCONS_00018132-exon-sc0000290-1491911889:35315..35370TCONS_00018132-exon-sc0000290-1491911889:35315..35370Clytia hemisphaericaexon
TCONS_00018132-exon-sc0000290-1491911889:35000..35089TCONS_00018132-exon-sc0000290-1491911889:35000..35089Clytia hemisphaericaexon
TCONS_00018132-exon-sc0000290-1491911889:34622..34709TCONS_00018132-exon-sc0000290-1491911889:34622..34709Clytia hemisphaericaexon
TCONS_00018132-exon-sc0000290-1491911889:34104..34233TCONS_00018132-exon-sc0000290-1491911889:34104..34233Clytia hemisphaericaexon
TCONS_00018132-exon-sc0000290-1491911889:33491..33621TCONS_00018132-exon-sc0000290-1491911889:33491..33621Clytia hemisphaericaexon
TCONS_00018132-exon-sc0000290-1491911889:32817..32897TCONS_00018132-exon-sc0000290-1491911889:32817..32897Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000290supercontigsc0000290:32817..35370 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.81699	0.957705	0.93795	2.98426	0.599538	0	0	1.48666e-07	0	0	0.115759	0.703855	0	0	0	0	0.284687	0	0.695719	0	4.51965	3.59221	0.484782	0	0	0.328101
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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