TCONS_00018136 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018136
Unique NameTCONS_00018136
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length714

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018136 ID=TCONS_00018136|Name=TCONS_00018136|organism=Clytia hemisphaerica|type=transcript|length=714bp
TACGCAAAGATCACTGAACTCGATTTTTGATAGAAGATAATGTATTCATT
TTTAGCTGTGTTATTTTTCGATTGTTGATTGTTTCGGCGATTTCACCATC
AACCAAATTGTAGTTTGACCTTTTACCAAATGGTGAAGTTTAATCGTGTA
TGAAATCTATTCAATATTATAATAAATCACAATCTTCAGGATTTGGTTTT
TGTGGCTTGACGAACATTCAATGTGGAAAAAGAAAAGCAATTGGTCAATG
GACCAATAAGATTTAGTTTTTGTGCATAGATGAACATGCGACGTGGAAAA
GGGAAAGGAGTTGGCCAAGGCTCTACACTTAAGCAAACTTCTTAGATGGG
ATTTGGCTTTTGTGGCTTGATGAACATTCAACGTGGAAAAAGAAACAGTT
GGTCAAGGCTCTACACTTAAGAAAACTTCTTGGATGGATTTGACAGACGT
GATGAATGGTATGCAAAGCAAATTTTGGATGACCGGAAGCTAAGAACTTA
AAGTTTCCATCGATTATGCTGACTGCATGGTTCGCACAGCAAACGGATTC
AAATTAACTTCTATCAGCAACAGACCGGTCATAAAAGACCTATTAATTGC
ACCACTTGGGAATTCACCTTACTGTGAGAAAAGGTCGCTTGATCTTGaca
tcaacaaaaacaacatatAAATTATGAATTTGGATATGTCACGCAAAGTT
CATCGCGAATCAAA
Run BLAST on NCBI

transcript from alignment at sc0000290:32817..35630-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018136 ID=TCONS_00018136|Name=TCONS_00018136|organism=Clytia hemisphaerica|type=transcript|length=2814bp|location=Sequence derived from alignment at sc0000290:32817..35630- (Clytia hemisphaerica)
TACGCAAAGATCACTGAACTCGATTTTTGATAGAAGATAATGTATTCATT
TTTAGCTGTGTTATTTTTCGATTGTTGATTGTTTCGGCGATTTCACCATC
AACCAAATTGTAGTTTGACCTTTTACCAAATGGTGAAGTTTAATCGTGTA
TGAAATCTATTCAATATTATAATAAATCACAATCTTCAGGATTTGGTTTT
TGTGGCTTGACGAACATTCAATGTGGAAAAAGAAAAGCAATTGGTCAATG
GACCAATAAGTAAGACTACATTCATATTGGAAGACACTTTTATTTGCTTT
TTGGGCCTACCTAGAGGTACTATAAATTAACCTGTGTTCGTCCGTTCGTA
TGAATTTTGTGATTTTTCTGAACAAAACCAGGCTTTTTTTGTTTCGAGCG
TAACACTCTTACTCTTTGGAATTTAGAGAGTTTCAAACCTACTTACGCAT
TAAGCCAACATCTGTGTTTTAAACATTCTTTTACTTGACCCAGTGCTGAA
GTTAAATCTTAGATGAAATCTATATAAATCACAATTTTCAGGATTTAGTT
TTTGTGCATAGATGAACATGCGACGTGGAAAAGGGAAAGGAGTTGGCCAA
GGCTCTACACTTAAGCAAACTTCTTAGATGGGTAAGACTTCATCTTGAAA
GATATTTTATTGAACTTTCATGTTGATATCAATTGCTTTTTCCGAACNAT
CATCTTGAAAGATATTTTATTGAACTTTCATTGATATCAATTGCCTTTTC
TGAACAAAACTAGTCCACCTTTGTTTCGAGCGTAAAACTCTTACTCTTTG
GGATATAGTGAGTTTCAAACCTATGCATTAAAGCCAATCATCTGTGTTTT
AAACATCCTTTTACTTGACCCAGTGCTGAAGTTAAATCTTAAACGAAATC
TATATAAATCACAATTTTCAGGATTTGGCTTTTGTGGCTTGATGAACATT
CAACGTGGAAAAAGAAACAGTTGGTCAAGGCTCTACACTTAAGAAAACTT
CTTGGATGGGTAAGACTTCATTCATCATTATTTTTTAATAAAACTAGGCT
ACGTCATATTCCCCTTTGTTTCGAACGTAAACTCCTACATACTCTTCAAA
ACTAAGGTCTAAAAAACTAGGAGCTGTGTATTGTGTAGACTAGAACAAAA
ACGAAAACGTTGAAAAATATCACCATAACCAGGCTTAAGAAACAGCATCG
AACAAAATGGATAAACTTAATACCTCGTAAAATGTTCTCATTCCATGAAA
AAAGTAATAGTAGTTGCAAAACCTTTTAATCAAACCCAGGTAACTTACTC
TTAGATTTGACAGACGTGATGAATGGTATGCAAAGCAAATTTTGGATGAC
CGGAAGCTAAGAACTTAAAGTAAGAACTTGTTGTTATCTATTTTCAGCCA
AAAATTTGAACAAATCTATCATATTGTTGTCAGTCGCACCTTGGAAACAG
AAGCTTTCATCTTCTCAGTTGGAAAAAGTTCCACCGGGGCTTTGATGTAG
CTGCGTATGTTTCAAATTCGATACATGGTAATAAAAAATGCCTATCAGAT
TTTGTATAAGGTTTTTCATTCCTGTTGATTCATATAGTTTGACATCTTTT
TATAAGAAACTCAATTTTAGCTTCCGTCCTGCTTTTTCTTAGCTTTCTAG
CTCTATGTTTGAAAAATTTGGTGCGATCACCCCTGACATTATATCATTTT
TATGTTTATTTGGTTAGGAGCTGTCGTTTGCCATGGTTAGATTTAAAAAA
TTCTATTACGAGATGATAAAAAAAAAATGGCTAATTTCAGAGCTCAAGCC
TAAGCAGTCTAGTTGCTTATAAGAAAAAGAAGTGTGTTCTTTCCTGTCTT
TTTCCCTTTTTAATAGAAAGGAAAACACAATGTATCGGACAGTTTTGGAC
ACATTTAGCAATCAAACTTGTCTACCATTTTGTCTGTGATGATACCAAAA
ATAATTTTAGTGTCTTTATTCAGCTTTACTAAAACGGTCTAATTGTTGTC
TTATACTAGGTTTCCATCGATTATGCTGACTGCATGGTTCGCACAGCAAA
CGGATTCAAATTAACTTCTATCAGCAACAGACCGGTCATAAAAGACCTAT
TAATTGCACCACTTGGGAATTCACCTTACTGTGAGAAAAGGTAAGGCAAT
ACTTACATGATTTCACTTTTTATCCGTGATATTCGAGACGTAAGGTTTTA
TACGGAAGCACACATTGAACTTTTGAACTCGAAAAGTAAAACTAGTTGCA
AACGTCTGGGCTAGTTTTGAGTGTTTCCGTATAAAACATTACGTCATGAA
TATAATAACTGTTGAGTAATGAGACTTAATAAAACTGACGTTATAAATGG
GAAATCTCTCGACTAAACCAAAAATGAAATAATTCATCAAAAGCATATTT
TCTGTGTGTCAGAAGTTTAATCCCAATTTCACGAGCATTCTTACTAATCG
TTGTCTAGTGAGGGATTTGCATTTTAGTTGAGAAAAGAAGGTAAAATAAT
TGTCAACAAAACCCATGTCTTTACTCCGAAAGATTCATGATAGGCACCGT
TGCAATGTCTTCCACGGACTCAACAACTAATTGGTCACAAGTGACCTATT
GATCGATTTTACTTCACGACCAATCAGCTGTCGAGTCTGTGATGTAATGT
CAAAAGACATTACAACGGCGCATATCATCAAATGTAATTGTTAACAAATC
TTGATCATGATGAAGTATTTCTCTCATTTTCAGGTCGCTTGATCTTGACA
TCAACAAAAACAACATATAAATTATGAATTTGGATATGTCACGCAAAGTT
CATCGCGAATCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010181XLOC_010181Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018136-exon-sc0000290-1575043694:35372..35630TCONS_00018136-exon-sc0000290-1575043694:35372..35630Clytia hemisphaericaexon
TCONS_00018136-exon-sc0000290-1575043694:35000..35089TCONS_00018136-exon-sc0000290-1575043694:35000..35089Clytia hemisphaericaexon
TCONS_00018136-exon-sc0000290-1575043694:34622..34709TCONS_00018136-exon-sc0000290-1575043694:34622..34709Clytia hemisphaericaexon
TCONS_00018136-exon-sc0000290-1575043694:34262..34326TCONS_00018136-exon-sc0000290-1575043694:34262..34326Clytia hemisphaericaexon
TCONS_00018136-exon-sc0000290-1575043694:33491..33621TCONS_00018136-exon-sc0000290-1575043694:33491..33621Clytia hemisphaericaexon
TCONS_00018136-exon-sc0000290-1575043694:32817..32897TCONS_00018136-exon-sc0000290-1575043694:32817..32897Clytia hemisphaericaexon
TCONS_00018136-exon-sc0000290-1510915933:35372..35630TCONS_00018136-exon-sc0000290-1510915933:35372..35630Clytia hemisphaericaexon
TCONS_00018136-exon-sc0000290-1510915933:35000..35089TCONS_00018136-exon-sc0000290-1510915933:35000..35089Clytia hemisphaericaexon
TCONS_00018136-exon-sc0000290-1510915933:34622..34709TCONS_00018136-exon-sc0000290-1510915933:34622..34709Clytia hemisphaericaexon
TCONS_00018136-exon-sc0000290-1510915933:34262..34326TCONS_00018136-exon-sc0000290-1510915933:34262..34326Clytia hemisphaericaexon
TCONS_00018136-exon-sc0000290-1510915933:33491..33621TCONS_00018136-exon-sc0000290-1510915933:33491..33621Clytia hemisphaericaexon
TCONS_00018136-exon-sc0000290-1510915933:32817..32897TCONS_00018136-exon-sc0000290-1510915933:32817..32897Clytia hemisphaericaexon
TCONS_00018136-exon-sc0000290-1491911889:35372..35630TCONS_00018136-exon-sc0000290-1491911889:35372..35630Clytia hemisphaericaexon
TCONS_00018136-exon-sc0000290-1491911889:35000..35089TCONS_00018136-exon-sc0000290-1491911889:35000..35089Clytia hemisphaericaexon
TCONS_00018136-exon-sc0000290-1491911889:34622..34709TCONS_00018136-exon-sc0000290-1491911889:34622..34709Clytia hemisphaericaexon
TCONS_00018136-exon-sc0000290-1491911889:34262..34326TCONS_00018136-exon-sc0000290-1491911889:34262..34326Clytia hemisphaericaexon
TCONS_00018136-exon-sc0000290-1491911889:33491..33621TCONS_00018136-exon-sc0000290-1491911889:33491..33621Clytia hemisphaericaexon
TCONS_00018136-exon-sc0000290-1491911889:32817..32897TCONS_00018136-exon-sc0000290-1491911889:32817..32897Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000290supercontigsc0000290:32817..35630 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.5733	1.30663	0.829836	0.356744	4.17931	3.76994	3.46276	2.15437	0.679427	2.156	1.30268	3.0274	1.2665	0.354535	0.178991	0.542493	0	0.467893	0	0.4345	0	0.475121	0.891378	0	10.0468	10.3822	0.264967	0.365717	0.42743	0.700945
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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