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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018167 ID=TCONS_00018167|Name=TCONS_00018167|organism=Clytia hemisphaerica|type=transcript|length=1262bp
NCGAATGAACAGGCAAGCAAAATACATCAGATATGAGGCACATGTACTTC
AATTCTAGTTTCACTGGCTTTTGCCAATGAACATACGAACTATATTAACT
CAATGGATTGGAAAGAAACCTCACACTAAGTTAATCAAAAGATACTTATT
ATACGAACTTATGTCTGGAACTCATCCACTGAGTAAGATTGGACTTTCTG
TTATGTTGTTTCAGcgactatgattttttttttcaaagtatgTAGTTCTT
TCATCAAATTAAGTTCAAAAAATGGATCAGAGTacctttgttttttctta
caaactagcacgtttttttataagaacactcaAAAAATTTGAAGGATGTT
CATAACTTaaattttaagcttaaaaatatttgtaacctgtttgttttttt
tcaccatcttattttttttgcgcaagcttcctaagaaatttgggtgtcaa
taaaagccttaaaatgttcttacttaatcttaaaaaatttttcagaaagC
ATGGGTTTATAGCCCTGGGAAAGAGGGACAActttgatgttttgattttt
taaatctttatttttgcttTAACTCTGTACTCTATATTTACTGTTGAATT
GTTTGTGGTAGATTTCAGAGCATCAACTATAAACCCAAATTCTTGTCGAA
ATAGCATTTATTTGCTTCACGAGAATTGAATGTTGCCTGGTTTTGTGTGT
GGGAAAGTGAGGCAAGGCCGGGAGGCAAGGCGATAAATGTTGCTTGGTTT
TGTGTGGGAAAGTGAGGCAAGGCGATAAATGGTGCTTGGATTTGTGTTGG
AAAGTGAGGCAAGGTGATAGCGTCGCGGTAAGAGTGTTAAGAAATGTTGT
GAGTTGTGGTGCGAACGTCTTGTGTGCTGGGANAGGTGATAGCGTCGCGG
TAAGAGTGTTAAGAAATGTTGTGAGTTGTGGTGTGAACGTCTTGTGTGCT
GGGAAGGATAAAGAGAGCTTGAATGTTGCAGTGTCTGTACGTATGCTGTG
ATTAAGTTGCTTTCAAAACCAGGTAACATTCAACTCGAAGCAAAGCAAAT
TAATGTTTTACTCTTTTTTCACAATCTAATGATGCTCTTATCTACCACAT
cctaattttgaatgaaaaacccttttattttcttcttttattctcCCAGA
AGTCGTTGGAATTGAGGTTCAATCTCAACTTTTTCCTTATTAGAGGTTGG
GGTTTAGTGTATTCTTCTtgagaaaaatgtttcagtcaaaTTCAACAAGG
CTTTGGACACCG Run BLAST on NCBI protein sequence of TCONS_00018167-protein >TCONS_00018167-protein ID=TCONS_00018167-protein|Name=TCONS_00018167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MLPGFESNLITAYVQTLQHSSSLYPSQHTRRSHHNSQHFLTLLPRRYHXS
QHTRRSHHNSQHFLTLLPRRYHLASLSNTNPSTIYRLASLSHTKPSNIYR
LASRPCLTFPHTKPGNIQFS Run BLAST on NCBI transcript from alignment at sc0000290:31425..32686 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018167 ID=TCONS_00018167|Name=TCONS_00018167|organism=Clytia hemisphaerica|type=transcript|length=1262bp|location=Sequence derived from alignment at sc0000290:31425..32686 (Clytia hemisphaerica)
CGGTGTCCAAAGCCTTGTTGAAtttgactgaaacatttttctcaAGAAGA
ATACACTAAACCCCAACCTCTAATAAGGAAAAAGTTGAGATTGAACCTCA
ATTCCAACGACTTCTGGgagaataaaagaagaaaataaaagggtttttca
ttcaaaattaggATGTGGTAGATAAGAGCATCATTAGATTGTGAAAAAAG
AGTAAAACATTAATTTGCTTTGCTTCGAGTTGAATGTTACCTGGTTTTGA
AAGCAACTTAATCACAGCATACGTACAGACACTGCAACATTCAAGCTCTC
TTTATCCTTCCCAGCACACAAGACGTTCACACCACAACTCACAACATTTC
TTAACACTCTTACCGCGACGCTATCACCTNTCCCAGCACACAAGACGTTC
GCACCACAACTCACAACATTTCTTAACACTCTTACCGCGACGCTATCACC
TTGCCTCACTTTCCAACACAAATCCAAGCACCATTTATCGCCTTGCCTCA
CTTTCCCACACAAAACCAAGCAACATTTATCGCCTTGCCTCCCGGCCTTG
CCTCACTTTCCCACACACAAAACCAGGCAACATTCAATTCTCGTGAAGCA
AATAAATGCTATTTCGACAAGAATTTGGGTTTATAGTTGATGCTCTGAAA
TCTACCACAAACAATTCAACAGTAAATATAGAGTACAGAGTTAaagcaaa
aataaagatttaaaaaatcaaaacatcaaagTTGTCCCTCTTTCCCAGGG
CTATAAACCCATGctttctgaaaaattttttaagattaagtaagaacatt
ttaaggcttttattgacacccaaatttcttaggaagcttgcgcaaaaaaa
ataagatggtgaaaaaaaacaaacaggttacaaatatttttaagcttaaa
atttAAGTTATGAACATCCTTCAAATTTTTtgagtgttcttataaaaaaa
cgtgctagtttgtaagaaaaaacaaaggtACTCTGATCCATTTTTTGAAC
TTAATTTGATGAAAGAACTAcatactttgaaaaaaaaaatcatagtcgCT
GAAACAACATAACAGAAAGTCCAATCTTACTCAGTGGATGAGTTCCAGAC
ATAAGTTCGTATAATAAGTATCTTTTGATTAACTTAGTGTGAGGTTTCTT
TCCAATCCATTGAGTTAATATAGTTCGTATGTTCATTGGCAAAAGCCAGT
GAAACTAGAATTGAAGTACATGTGCCTCATATCTGATGTATTTTGCTTGC
CTGTTCATTCGN Coding sequence (CDS) from alignment at sc0000290:31425..32686 >TCONS_00018167 ID=TCONS_00018167|Name=TCONS_00018167|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at sc0000290:31425..32686 (Clytia hemisphaerica)
ATGTTACCTGGTTTTGAAAGCAACTTAATCACAGCATACGTACAGACACT
GCAACATTCAAGCTCTCTTTATCCTTCCCAGCACACAAGACGTTCACACC
ACAACTCACAACATTTCTTAACACTCTTACCGCGACGCTATCACCTNTCC
CAGCACACAAGACGTTCGCACCACAACTCACAACATTTCTTAACACTCTT
ACCGCGACGCTATCACCTTGCCTCACTTTCCAACACAAATCCAAGCACCA
TTTATCGCCTTGCCTCACTTTCCCACACAAAACCAAGCAACATTTATCGC
CTTGCCTCCCGGCCTTGCCTCACTTTCCCACACACAAAACCAGGCAACAT
TCAATTCTCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018167-exon-sc0000290-1491911889:31425..32686 | TCONS_00018167-exon-sc0000290-1491911889:31425..32686 | Clytia hemisphaerica | exon |
| TCONS_00018167-exon-sc0000290-1510915933:31425..32686 | TCONS_00018167-exon-sc0000290-1510915933:31425..32686 | Clytia hemisphaerica | exon |
| TCONS_00018167-exon-sc0000290-1575043694:31425..32686 | TCONS_00018167-exon-sc0000290-1575043694:31425..32686 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000290 | supercontig | sc0000290:31425..32686 . |
Blast
The following BLAST results are available for this feature:
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