TCONS_00018171 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018171
Unique NameTCONS_00018171
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018171 ID=TCONS_00018171|Name=TCONS_00018171|organism=Clytia hemisphaerica|type=transcript|length=707bp
gtcaaaattacACTAGCTTAGAACCTTATGGTTGGAGTGTCAGATGTGAT
GTCTAACTTCTGCTCAAAAAGTTTTCACTACACTTATACAAACGACTGAT
TGTAAGCAATTTGTGTTGCTGCTCGTTTTATTGCGTCCTCCCTTTTCGCT
GGGGGGAGCCCCAAAAGAGGGGGGAGCAACAAAACTTTGATTTTCTTGGG
GGTCTGAGACTAAAGGGATCACCTGCTTTTCCCTGGGGGAGCTGAGATAC
AAGACCAGACCCAATTAATCAAACTTGCCAAACCAATTAAACAATAGAAC
TAATTGAACTCAACATTATCATCGATCatgattaaaaagttttgagtaaa
ttattaatCAAACCTCTaatcgaacaaaatttttgaagcaataggagttt
gtttggtcagtaaaaagtGTAATTAGTTTAAGATGGTTATTAGATTATCA
TATCTTTCATCACTTGCAAAAACTTCTATTATGGCAGATGATTGCCATTC
TGACAGTTCCTGTACTTAAGTTtaattgtacccggatatttgtctatttG
GAATAAAGCTTGAAGCTGCCCCTCTGTTGCGCGATTTCGCCTGTAACCGG
ATGGCAGAATAACAAAGCATGGTGGTTTTGTTTGCCTCTGGCATTGAATA
TATGTAGGAAAAGTGGGTATCATTATCGGAAGTAATTCCCTGATTATCAT
TCTGAAT
Run BLAST on NCBI

transcript from alignment at sc0000290:47321..48027

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018171 ID=TCONS_00018171|Name=TCONS_00018171|organism=Clytia hemisphaerica|type=transcript|length=707bp|location=Sequence derived from alignment at sc0000290:47321..48027 (Clytia hemisphaerica)
ATTCAGAATGATAATCAGGGAATTACTTCCGATAATGATACCCACTTTTC
CTACATATATTCAATGCCAGAGGCAAACAAAACCACCATGCTTTGTTATT
CTGCCATCCGGTTACAGGCGAAATCGCGCAACAGAGGGGCAGCTTCAAGC
TTTATTCCaaatagacaaatatccgggtacaattaAACTTAAGTACAGGA
ACTGTCAGAATGGCAATCATCTGCCATAATAGAAGTTTTTGCAAGTGATG
AAAGATATGATAATCTAATAACCATCTTAAACTAATTACactttttactg
accaaacaaactcctattgcttcaaaaattttgttcgattAGAGGTTTGa
ttaataatttactcaaaactttttaatcatGATCGATGATAATGTTGAGT
TCAATTAGTTCTATTGTTTAATTGGTTTGGCAAGTTTGATTAATTGGGTC
TGGTCTTGTATCTCAGCTCCCCCAGGGAAAAGCAGGTGATCCCTTTAGTC
TCAGACCCCCAAGAAAATCAAAGTTTTGTTGCTCCCCCCTCTTTTGGGGC
TCCCCCCAGCGAAAAGGGAGGACGCAATAAAACGAGCAGCAACACAAATT
GCTTACAATCAGTCGTTTGTATAAGTGTAGTGAAAACTTTTTGAGCAGAA
GTTAGACATCACATCTGACACTCCAACCATAAGGTTCTAAGCTAGTgtaa
ttttgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010201XLOC_010201Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018171-exon-sc0000290-1491911889:47321..48027TCONS_00018171-exon-sc0000290-1491911889:47321..48027Clytia hemisphaericaexon
TCONS_00018171-exon-sc0000290-1510915933:47321..48027TCONS_00018171-exon-sc0000290-1510915933:47321..48027Clytia hemisphaericaexon
TCONS_00018171-exon-sc0000290-1575043694:47321..48027TCONS_00018171-exon-sc0000290-1575043694:47321..48027Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000290supercontigsc0000290:47321..48027 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.906187	0.337138	0.434787	0.950234	0.101345	0	0.0926582	0.196147	0.0604841	0	0	0	0.0551833	0	0.0836285	0	0	0.0584441	0	0	0	0	0.197055	0.176346	0.496536	0.0736361	0	0	0.0887667	0.0847474
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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