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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018172 ID=TCONS_00018172|Name=TCONS_00018172|organism=Clytia hemisphaerica|type=transcript|length=984bp
aagcaagataaaacttaatccgaaaattgattttgccatGGATCAATGTG
GAGTCagatcacaaacaacaaaattttcattttttgaaaaaaaactaaTA
TTTCGCTTCACAACAAAAGCATCGTCAGAGTGATAGTAATACTGAAAATG
TTGAAcaaatttctagaaaaatcaaaaatcaactaGCGGAACAAATTCAA
GTCTCTAGAGGCTTTCAAACCCGAGTTCATTTCTGGATTTTTATCTTTAA
TTGCCAACTGACGAATTTCAAGTGTATAGAAAACCAACAAATACAGGACT
TTATGTCAACTTTGATAGTTTCGTGCCGTGGCAACATTGCATTTCTTGGT
TTCGTAGTTTAATTGTTCGTGCTACTCGAATTTGTTCACCTAATAGGCTA
CCTgctgaaatcaagaaaattaaagaaatggCATCTTGGAATGGTTTTCC
TAAATACCTCGTCAACTCGTTAACTAAACGTTTTATTGAGAAATTATCGA
CCCCTCGTTCATCGGCTGTGAATGAAGACCCTGTTGAAGAACCTGTCGTA
ATTTGGTTTAACATGCCTTACCTTGGAAGTAGAAGTCTTAGTAATTTTCT
AGCTTGTGTTAAGAAAATTAAACGTAATTTGAGTCTTGGatcaaagaaaa
tcatttttaagcaaagattTAAGACCACCAAAATCAGCTATTATTGCAAT
ACCAAAGATCGCTCGCCTTTGCTTACCTCTTCCAACGTTGTGTACGAGTT
TAAATGTCCTGGATGTTCTTCTAAATACATAGGGAAAAGTGATCGTACCC
TATCTGAAAGGACCAGAGAACATGCAACTGTCAAGGGATCTGCCGTTTAC
CGTCACCTCACTAAGTGTGAAGGCATTAACTATATAGATTCCCTCTTGTT
GATTGGCGTCACAGAATCGCTCACTGATGATGAAATACGTGATAAACGGA
TTAATCACGTTCGCAATAACATTCGAGTTGTTGN Run BLAST on NCBI protein sequence of TCONS_00018172-protein >TCONS_00018172-protein ID=TCONS_00018172-protein|Name=TCONS_00018172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MASWNGFPKYLVNSLTKRFIEKLSTPRSSAVNEDPVEEPVVIWFNMPYLG
SRSLSNFLACVKKIKRNLSLGSKKIIFKQRFKTTKISYYCNTKDRSPLLT
SSNVVYEFKCPGCSSKYIGKSDRTLSERTREHATVKGSAVYRHLTKCEGI
NYIDSLLLIGVTESLTDDEIRDKRINHVRNNIRVV Run BLAST on NCBI transcript from alignment at sc0000290:50299..51282 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018172 ID=TCONS_00018172|Name=TCONS_00018172|organism=Clytia hemisphaerica|type=transcript|length=984bp|location=Sequence derived from alignment at sc0000290:50299..51282 (Clytia hemisphaerica)
NCAACAACTCGAATGTTATTGCGAACGTGATTAATCCGTTTATCACGTAT
TTCATCATCAGTGAGCGATTCTGTGACGCCAATCAACAAGAGGGAATCTA
TATAGTTAATGCCTTCACACTTAGTGAGGTGACGGTAAACGGCAGATCCC
TTGACAGTTGCATGTTCTCTGGTCCTTTCAGATAGGGTACGATCACTTTT
CCCTATGTATTTAGAAGAACATCCAGGACATTTAAACTCGTACACAACGT
TGGAAGAGGTAAGCAAAGGCGAGCGATCTTTGGTATTGCAATAATAGCTG
ATTTTGGTGGTCTTAaatctttgcttaaaaatgattttctttgatCCAAG
ACTCAAATTACGTTTAATTTTCTTAACACAAGCTAGAAAATTACTAAGAC
TTCTACTTCCAAGGTAAGGCATGTTAAACCAAATTACGACAGGTTCTTCA
ACAGGGTCTTCATTCACAGCCGATGAACGAGGGGTCGATAATTTCTCAAT
AAAACGTTTAGTTAACGAGTTGACGAGGTATTTAGGAAAACCATTCCAAG
ATGccatttctttaattttcttgatttcagcAGGTAGCCTATTAGGTGAA
CAAATTCGAGTAGCACGAACAATTAAACTACGAAACCAAGAAATGCAATG
TTGCCACGGCACGAAACTATCAAAGTTGACATAAAGTCCTGTATTTGTTG
GTTTTCTATACACTTGAAATTCGTCAGTTGGCAATTAAAGATAAAAATCC
AGAAATGAACTCGGGTTTGAAAGCCTCTAGAGACTTGAATTTGTTCCGCt
agttgatttttgatttttctagaaatttgTTCAACATTTTCAGTATTACT
ATCACTCTGACGATGCTTTTGTTGTGAAGCGAAATAttagttttttttca
aaaaatgaaaattttgttgtttgtgatctGACTCCACATTGATCCatggc
aaaatcaattttcggattaagttttatcttgctt Coding sequence (CDS) from alignment at sc0000290:50299..51282 >TCONS_00018172 ID=TCONS_00018172|Name=TCONS_00018172|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at sc0000290:50299..51282 (Clytia hemisphaerica)
AACAACTCGAATGTTATTGCGAACGTGATTAATCCGTTTATCACGTATTT
CATCATCAGTGAGCGATTCTGTGACGCCAATCAACAAGAGGGAATCTATA
TAGTTAATGCCTTCACACTTAGTGAGGTGACGGTAAACGGCAGATCCCTT
GACAGTTGCATGTTCTCTGGTCCTTTCAGATAGGGTACGATCACTTTTCC
CTATGTATTTAGAAGAACATCCAGGACATTTAAACTCGTACACAACGTTG
GAAGAGGTAAGCAAAGGCGAGCGATCTTTGGTATTGCAATAATAGCTGAT
TTTGGTGGTCTTAaatctttgcttaaaaatgattttctttgatCCAAGAC
TCAAATTACGTTTAATTTTCTTAACACAAGCTAGAAAATTACTAAGACTT
CTACTTCCAAGGTAAGGCATGTTAAACCAAATTACGACAGGTTCTTCAAC
AGGGTCTTCATTCACAGCCGATGAACGAGGGGTCGATAATTTCTCAATAA
AACGTTTAGTTAACGAGTTGACGAGGTATTTAGGAAAACCATTCCAAGAT
Gccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018172-exon-sc0000290-1491911889:50299..51282 | TCONS_00018172-exon-sc0000290-1491911889:50299..51282 | Clytia hemisphaerica | exon |
| TCONS_00018172-exon-sc0000290-1510915933:50299..51282 | TCONS_00018172-exon-sc0000290-1510915933:50299..51282 | Clytia hemisphaerica | exon |
| TCONS_00018172-exon-sc0000290-1575043694:50299..51282 | TCONS_00018172-exon-sc0000290-1575043694:50299..51282 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000290 | supercontig | sc0000290:50299..51282 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000305 | GIY-YIG_SF |
Blast
The following BLAST results are available for this feature:
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