TCONS_00018178 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018178
Unique NameTCONS_00018178
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length372

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018178 ID=TCONS_00018178|Name=TCONS_00018178|organism=Clytia hemisphaerica|type=transcript|length=372bp
CTCGTTTTCAACTGGGTGCATTTCAGTCAAAGGAAAGGACAGGGTGAATT
GCGAGGAAGCCGAGACTATAGGAGAGAGCATTCAAAAGAAACTGGATGGC
GTACGGTTTTTATTGAAGGAAAGATTCTGAAAAAAGATCTTATCGTCAAC
CTAGATGCCTTGACAAATAGCACAGTAGATGAGGGAAATAAAGATGCTTC
ACAAGACTTGCTGCGATTGCAGAACGAGAGGAAAATGTGGAGCAGTACTT
CGACTACGAATTAAATCACCAACCACTTTCGTTGTTCAAGAATGGTTTAA
TGCGGAAGCCCGAAAAATCTGCGCTCAAAAAACATGTACTAGCAGATAAA
GACGCCGTCACTATGAAACCGT
Run BLAST on NCBI

transcript from alignment at sc0000290:174988..175359

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018178 ID=TCONS_00018178|Name=TCONS_00018178|organism=Clytia hemisphaerica|type=transcript|length=372bp|location=Sequence derived from alignment at sc0000290:174988..175359 (Clytia hemisphaerica)
ACGGTTTCATAGTGACGGCGTCTTTATCTGCTAGTACATGTTTTTTGAGC
GCAGATTTTTCGGGCTTCCGCATTAAACCATTCTTGAACAACGAAAGTGG
TTGGTGATTTAATTCGTAGTCGAAGTACTGCTCCACATTTTCCTCTCGTT
CTGCAATCGCAGCAAGTCTTGTGAAGCATCTTTATTTCCCTCATCTACTG
TGCTATTTGTCAAGGCATCTAGGTTGACGATAAGATCTTTTTTCAGAATC
TTTCCTTCAATAAAAACCGTACGCCATCCAGTTTCTTTTGAATGCTCTCT
CCTATAGTCTCGGCTTCCTCGCAATTCACCCTGTCCTTTCCTTTGACTGA
AATGCACCCAGTTGAAAACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010208XLOC_010208Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018178-exon-sc0000290-1491911889:174988..175359TCONS_00018178-exon-sc0000290-1491911889:174988..175359Clytia hemisphaericaexon
TCONS_00018178-exon-sc0000290-1510915933:174988..175359TCONS_00018178-exon-sc0000290-1510915933:174988..175359Clytia hemisphaericaexon
TCONS_00018178-exon-sc0000290-1575043694:174988..175359TCONS_00018178-exon-sc0000290-1575043694:174988..175359Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000290supercontigsc0000290:174988..175359 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.212248	0.49288	0.241103	1.4676	2.31943	1.95881	0.785919	0.183414	0.227187	1.54359	1.44957	0.868532	0.45099	0.865141	0.663164	0.163393	0.502417	1.6196	0.968456	0	0.615875	0.249559	0	0	1.45992	0.298448	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018178 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top