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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018180 ID=TCONS_00018180|Name=TCONS_00018180|organism=Clytia hemisphaerica|type=transcript|length=1413bp
GACAAATGGAAAAATATCAAACGGTTAGATTTTGTACCTAGAAGTATAAC
AATGAACGTGAAAAATTTAACAACGATTTCTTTAATTCTGTTTTGGTTTG
AAGCTCAAATCATAATCATTGCTTCAAAGAGATTCGAAATTGTTGGACGA
AACAAAATACCAAACAAAACACCTTACTCGACAGTTGATGTCAAATTTGA
GCAACATTGTTTCTCAAAATGTCATCATATGACAAAATGCTTATCCTTTC
TCATCAACAGAACTTCCAATGCAATGCCGATTCGATGTCATTTCTATGAT
AGCATCTCAACAAATTTGACTGATATTCAAATAACAACAGCTGATACGAA
GTTATTCACAACTGCCGACATCCAAGACTGCCAGGATTTATACAACTCAG
GCTACAAAAAGTCTGGTGTTTACTTCATAAACTTTCTTGGTAAAGGTCCA
AGAGATATCAGATGTGATATGGAAATTGAAGGTGGTGGTTGGATTGTGAT
ACTTTACCGAATGACTGGTCAACATAATTGGAATGTTGGATGGAATCAAT
ATAAAAACGGTATCGGTGAAATTACTGGTGATTTTTATCTTGGAAATGAA
CTTGTTCATCAAATCACAGATTCTGGACAATATCAATTGTATTTCACTAC
AGAATTAAGAGCTGTTGATTCACCACCAGCTGATCCGATGTATTATGGTT
GGTACGAACATTTCCACCTTTCAAATGAAGCAGATTCTTACCGTTTAAAT
GTAGGTAGCTTCAAAGGAGGACAAACAGATCCGTTAACAAACTTGGACGG
AACACAATTTACGACAATAGACCGCGATAGAGATACAAATAACAACAAAA
ATTGCGGGAACGTTAAAAAAGGGGGATTTTGGTGGCGAGCATGTGGTGGT
TTTCAACCAACGAGCATTTACCTTGATACAAATTCTATGAGATGTATGGG
GCTTTATACTACTGCTGGTAGAACTTGTACAAAGAACTTTCAAATtatga
taaagaaaaaaatatgaacatAAAGGGATATCATATGATCACTAAGAAGG
TGTTCTTTTGCTTCACCACTGAACTTTATGTAAACCCTGGTGGCCCAACT
AAAATCTTTTGTAACTAAATAGTACTACTACTCAATGCGGgtgtaaaaac
accaaaagcGCCCGACCTACTTTTTCTTTACACTAGTAAATTTGTCAGAT
TAAAATTAGACAAAGTTTCAACAACATAATACAAAATTTTTGCCTCACCA
CCCCACATTAATCAAGGCATGACAAGGTGCAGAGCAGACTTGTGTATTAA
TTGCTagaaatctatttaaaagatcttTTAGGCGCCCCTTTTAAAACAAT
CCCAAGGGGCTATGGAGGAATGCAACTATaacttaatttttcttctaaat
tttttatttccaa Run BLAST on NCBI protein sequence of TCONS_00018180-protein >TCONS_00018180-protein ID=TCONS_00018180-protein|Name=TCONS_00018180-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
DKWKNIKRLDFVPRSITMNVKNLTTISLILFWFEAQIIIIASKRFEIVGR
NKIPNKTPYSTVDVKFEQHCFSKCHHMTKCLSFLINRTSNAMPIRCHFYD
SISTNLTDIQITTADTKLFTTADIQDCQDLYNSGYKKSGVYFINFLGKGP
RDIRCDMEIEGGGWIVILYRMTGQHNWNVGWNQYKNGIGEITGDFYLGNE
LVHQITDSGQYQLYFTTELRAVDSPPADPMYYGWYEHFHLSNEADSYRLN
VGSFKGGQTDPLTNLDGTQFTTIDRDRDTNNNKNCGNVKKGGFWWRACGG
FQPTSIYLDTNSMRCMGLYTTAGRTCTKNFQIMIKKKI Run BLAST on NCBI transcript from alignment at sc0000290:208075..209487 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018180 ID=TCONS_00018180|Name=TCONS_00018180|organism=Clytia hemisphaerica|type=transcript|length=1413bp|location=Sequence derived from alignment at sc0000290:208075..209487 (Clytia hemisphaerica)
ttggaaataaaaaatttagaagaaaaattaagttATAGTTGCATTCCTCC
ATAGCCCCTTGGGATTGTTTTAAAAGGGGCGCCTAAaagatcttttaaat
agatttctAGCAATTAATACACAAGTCTGCTCTGCACCTTGTCATGCCTT
GATTAATGTGGGGTGGTGAGGCAAAAATTTTGTATTATGTTGTTGAAACT
TTGTCTAATTTTAATCTGACAAATTTACTAGTGTAAAGAAAAAGTAGGTC
GGGCgcttttggtgtttttacacCCGCATTGAGTAGTAGTACTATTTAGT
TACAAAAGATTTTAGTTGGGCCACCAGGGTTTACATAAAGTTCAGTGGTG
AAGCAAAAGAACACCTTCTTAGTGATCATATGATATCCCTTTatgttcat
atttttttctttatcataATTTGAAAGTTCTTTGTACAAGTTCTACCAGC
AGTAGTATAAAGCCCCATACATCTCATAGAATTTGTATCAAGGTAAATGC
TCGTTGGTTGAAAACCACCACATGCTCGCCACCAAAATCCCCCTTTTTTA
ACGTTCCCGCAATTTTTGTTGTTATTTGTATCTCTATCGCGGTCTATTGT
CGTAAATTGTGTTCCGTCCAAGTTTGTTAACGGATCTGTTTGTCCTCCTT
TGAAGCTACCTACATTTAAACGGTAAGAATCTGCTTCATTTGAAAGGTGG
AAATGTTCGTACCAACCATAATACATCGGATCAGCTGGTGGTGAATCAAC
AGCTCTTAATTCTGTAGTGAAATACAATTGATATTGTCCAGAATCTGTGA
TTTGATGAACAAGTTCATTTCCAAGATAAAAATCACCAGTAATTTCACCG
ATACCGTTTTTATATTGATTCCATCCAACATTCCAATTATGTTGACCAGT
CATTCGGTAAAGTATCACAATCCAACCACCACCTTCAATTTCCATATCAC
ATCTGATATCTCTTGGACCTTTACCAAGAAAGTTTATGAAGTAAACACCA
GACTTTTTGTAGCCTGAGTTGTATAAATCCTGGCAGTCTTGGATGTCGGC
AGTTGTGAATAACTTCGTATCAGCTGTTGTTATTTGAATATCAGTCAAAT
TTGTTGAGATGCTATCATAGAAATGACATCGAATCGGCATTGCATTGGAA
GTTCTGTTGATGAGAAAGGATAAGCATTTTGTCATATGATGACATTTTGA
GAAACAATGTTGCTCAAATTTGACATCAACTGTCGAGTAAGGTGTTTTGT
TTGGTATTTTGTTTCGTCCAACAATTTCGAATCTCTTTGAAGCAATGATT
ATGATTTGAGCTTCAAACCAAAACAGAATTAAAGAAATCGTTGTTAAATT
TTTCACGTTCATTGTTATACTTCTAGGTACAAAATCTAACCGTTTGATAT
TTTTCCATTTGTC Coding sequence (CDS) from alignment at sc0000290:208075..209487 >TCONS_00018180 ID=TCONS_00018180|Name=TCONS_00018180|organism=Clytia hemisphaerica|type=CDS|length=1017bp|location=Sequence derived from alignment at sc0000290:208075..209487 (Clytia hemisphaerica)
tcatatttttttctttatcataATTTGAAAGTTCTTTGTACAAGTTCTAC
CAGCAGTAGTATAAAGCCCCATACATCTCATAGAATTTGTATCAAGGTAA
ATGCTCGTTGGTTGAAAACCACCACATGCTCGCCACCAAAATCCCCCTTT
TTTAACGTTCCCGCAATTTTTGTTGTTATTTGTATCTCTATCGCGGTCTA
TTGTCGTAAATTGTGTTCCGTCCAAGTTTGTTAACGGATCTGTTTGTCCT
CCTTTGAAGCTACCTACATTTAAACGGTAAGAATCTGCTTCATTTGAAAG
GTGGAAATGTTCGTACCAACCATAATACATCGGATCAGCTGGTGGTGAAT
CAACAGCTCTTAATTCTGTAGTGAAATACAATTGATATTGTCCAGAATCT
GTGATTTGATGAACAAGTTCATTTCCAAGATAAAAATCACCAGTAATTTC
ACCGATACCGTTTTTATATTGATTCCATCCAACATTCCAATTATGTTGAC
CAGTCATTCGGTAAAGTATCACAATCCAACCACCACCTTCAATTTCCATA
TCACATCTGATATCTCTTGGACCTTTACCAAGAAAGTTTATGAAGTAAAC
ACCAGACTTTTTGTAGCCTGAGTTGTATAAATCCTGGCAGTCTTGGATGT
CGGCAGTTGTGAATAACTTCGTATCAGCTGTTGTTATTTGAATATCAGTC
AAATTTGTTGAGATGCTATCATAGAAATGACATCGAATCGGCATTGCATT
GGAAGTTCTGTTGATGAGAAAGGATAAGCATTTTGTCATATGATGACATT
TTGAGAAACAATGTTGCTCAAATTTGACATCAACTGTCGAGTAAGGTGTT
TTGTTTGGTATTTTGTTTCGTCCAACAATTTCGAATCTCTTTGAAGCAAT
GATTATGATTTGAGCTTCAAACCAAAACAGAATTAAAGAAATCGTTGTTA
AATTTTTCACGTTCATTGTTATACTTCTAGGTACAAAATCTAACCGTTTG
ATATTTTTCCATTTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018180-exon-sc0000290-1491911889:208075..209487 | TCONS_00018180-exon-sc0000290-1491911889:208075..209487 | Clytia hemisphaerica | exon |
| TCONS_00018180-exon-sc0000290-1510915933:208075..209487 | TCONS_00018180-exon-sc0000290-1510915933:208075..209487 | Clytia hemisphaerica | exon |
| TCONS_00018180-exon-sc0000290-1575043694:208075..209487 | TCONS_00018180-exon-sc0000290-1575043694:208075..209487 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000290 | supercontig | sc0000290:208075..209487 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00018180 vs. Swiss-Prot (Human)
Match: ANGL7 (Angiopoietin-related protein 7 OS=Homo sapiens GN=ANGPTL7 PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 6.489e-29 Identity = 70/185 (37.84%), Postives = 98/185 (52.97%), Query Frame = 1
Query: 295 YDSISTNLTDIQITTADTKLFTTAD-IQDCQDLYNSGYKKSGVYFI---NFLGKGPRDIRCDMEIEGGGWIVILYRMTGQHNWNVGWNQYKNGIGEITGDFYLGNELVHQITDSGQYQLYFTTELRAVDSPPADPMYYGWYEHFHLSNEADSYRLNVGSFKGG-QTDPLTNLDGTQFTTIDRDRD 834
Y ++ + +Q+ A T T+AD I DC LY Y+ SGVY + +FLG ++ CDME GGGW +I R +G ++ W QYK G G I GDF+LGNE +H+++ T LR + Y Y HF L NE +SYRL +G++ G D L + T F+T D+D D
Sbjct: 102 YSEMNNQIDIMQLQAAQTVTQTSADAIYDCSSLYQKNYRISGVYKLPPDDFLGSPELEVFCDMETSGGGWTIIQRRKSGLVSFYRDWKQYKQGFGSIRGDFWLGNEHIHRLSRQ-------PTRLRVEMEDWEGNLRYAEYSHFVLGNELNSYRLFLGNYTGNVGNDALQYHNNTAFSTKDKDND 279
The following BLAST results are available for this feature:
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