TCONS_00018183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018183
Unique NameTCONS_00018183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length971

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018183 ID=TCONS_00018183|Name=TCONS_00018183|organism=Clytia hemisphaerica|type=transcript|length=971bp
NNAAGAATTGTGAAATCAAGACTGACCGATGCAAAGGAGTCACATGTCGA
AAtggaggaaaatgcaaaactgttggcaacacctacaaatgtgaatgcaa
aAAAAGGATACGAAGGAAAGAATTGTGAAATCAAGACTGACCGATGCAAA
GGAGTCACATGTCGAAATGGAGGAAAATGTAAAACTGTTGGCAACaccta
caaatgtgaatgcaaaaaaggatacgaaggaaagaattgtgaaatcaaga
ctgaccgatgcaaaggagtcacatgtcaaaatggaggaaaatgcaaaact
gttggcaacacctacaaatgtgaatgcaaaaaaggataCGAAGGAAAGAA
TTGTGAAATCAAGACGGACCGATGCAAAGGAGTCACATGTCGAAATGGAG
GAAGATGCAAAACTGTTGGCAACacctacaaatgtgaatgcaaaaaagga
taCGAAGGAAAGAATTGTGAAATCAAGACTGACCGATGCAAAGGAGCCCC
TTGTCGAAATGgtggaaaatgcaaaactgttggcaacacctacaaatgtg
aatgcaGAAAGGGATACGAAGGACAGCattgtgaaattgaaaatgaccgA
TGTAGAGGAATCGTTTGTCAAAATGGTGGAAAATGTAAAACTGTTGGAGA
CAGCTTCAAATGTAAATGCAGGAGAGGATTTACTGGAAAGCATTGTGAAA
ACAGACCTTACTAACTTTTCAAAGTTTAGTTTGGAATTTGCggaaatgaa
aatggaatatgttaAACGATTTTAttcaattatctttttattttaagctc
taataattcttttttattgGGTTCTTTTAGCGGGGTTTTCAAAGTTTACT
TTCTGAAATTTTAGGTTGATAGTTAATCAATATAAGAATTTTCCAAGTTT
CACAACGAGATGTTGTTGAATAAGTTATTCGTGATTTGGATTAAAGTGAA
ATTCCTTTGATAGTGTTGGGA
Run BLAST on NCBI

protein sequence of TCONS_00018183-protein

>TCONS_00018183-protein ID=TCONS_00018183-protein|Name=TCONS_00018183-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
XRIVKSRLTDAKESHVEMEENAKLLATPTNVNAKKGYEGKNCEIKTDRCK
GVTCRNGGKCKTVGNTYKCECKKGYEGKNCEIKTDRCKGVTCQNGGKCKT
VGNTYKCECKKGYEGKNCEIKTDRCKGVTCRNGGRCKTVGNTYKCECKKG
YEGKNCEIKTDRCKGAPCRNGGKCKTVGNTYKCECRKGYEGQHCEIENDR
CRGIVCQNGGKCKTVGDSFKCKCRRGFTGKHCENRPY
Run BLAST on NCBI

transcript from alignment at sc0000290:329627..330597

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018183 ID=TCONS_00018183|Name=TCONS_00018183|organism=Clytia hemisphaerica|type=transcript|length=971bp|location=Sequence derived from alignment at sc0000290:329627..330597 (Clytia hemisphaerica)
TCCCAACACTATCAAAGGAATTTCACTTTAATCCAAATCACGAATAACTT
ATTCAACAACATCTCGTTGTGAAACTTGGAAAATTCTTATATTGATTAAC
TATCAACCTAAAATTTCAGAAAGTAAACTTTGAAAACCCCGCTAAAAGAA
CCcaataaaaaagaattattagagcttaaaataaaaagataattgaaTAA
AATCGTTtaacatattccattttcatttccGCAAATTCCAAACTAAACTT
TGAAAAGTTAGTAAGGTCTGTTTTCACAATGCTTTCCAGTAAATCCTCTC
CTGCATTTACATTTGAAGCTGTCTCCAACAGTTTTACATTTTCCACCATT
TTGACAAACGATTCCTCTACATcggtcattttcaatttcacaatGCTGTC
CTTCGTATCCCTTTCtgcattcacatttgtaggtgttgccaacagttttg
cattttccacCATTTCGACAAGGGGCTCCTTTGCATCGGTCAGTCTTGAT
TTCACAATTCTTTCCTTCGtatccttttttgcattcacatttgtaggtGT
TGCCAACAGTTTTGCATCTTCCTCCATTTCGACATGTGACTCCTTTGCAT
CGGTCCGTCTTGATTTCACAATTCTTTCCTTCGtatccttttttgcattc
acatttgtaggtgttgccaacagttttgcattttcctccattttgacatg
tgactcctttgcatcggtcagtcttgatttcacaattctttccttcgtat
ccttttttgcattcacatttgtaggtGTTGCCAACAGTTTTACATTTTCC
TCCATTTCGACATGTGACTCCTTTGCATCGGTCAGTCTTGATTTCACAAT
TCTTTCCTTCGTATCCTTTTtttgcattcacatttgtaggtgttgccaac
agttttgcattttcctccaTTTCGACATGTGACTCCTTTGCATCGGTCAG
TCTTGATTTCACAATTCTTNN

Coding sequence (CDS) from alignment at sc0000290:329627..330597

>TCONS_00018183 ID=TCONS_00018183|Name=TCONS_00018183|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at sc0000290:329627..330597 (Clytia hemisphaerica)
TTAGTAAGGTCTGTTTTCACAATGCTTTCCAGTAAATCCTCTCCTGCATT
TACATTTGAAGCTGTCTCCAACAGTTTTACATTTTCCACCATTTTGACAA
ACGATTCCTCTACATcggtcattttcaatttcacaatGCTGTCCTTCGTA
TCCCTTTCtgcattcacatttgtaggtgttgccaacagttttgcattttc
cacCATTTCGACAAGGGGCTCCTTTGCATCGGTCAGTCTTGATTTCACAA
TTCTTTCCTTCGtatccttttttgcattcacatttgtaggtGTTGCCAAC
AGTTTTGCATCTTCCTCCATTTCGACATGTGACTCCTTTGCATCGGTCCG
TCTTGATTTCACAATTCTTTCCTTCGtatccttttttgcattcacatttg
taggtgttgccaacagttttgcattttcctccattttgacatgtgactcc
tttgcatcggtcagtcttgatttcacaattctttccttcgtatccttttt
tgcattcacatttgtaggtGTTGCCAACAGTTTTACATTTTCCTCCATTT
CGACATGTGACTCCTTTGCATCGGTCAGTCTTGATTTCACAATTCTTTCC
TTCGTATCCTTTTtttgcattcacatttgtaggtgttgccaacagttttg
cattttcctccaTTTCGACATGTGACTCCTTTGCATCGGTCAGTCTTGAT
TTCACAATTCTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010213XLOC_010213Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018183-exon-sc0000290-1491911889:329627..330597TCONS_00018183-exon-sc0000290-1491911889:329627..330597Clytia hemisphaericaexon
TCONS_00018183-exon-sc0000290-1510915933:329627..330597TCONS_00018183-exon-sc0000290-1510915933:329627..330597Clytia hemisphaericaexon
TCONS_00018183-exon-sc0000290-1575043694:329627..330597TCONS_00018183-exon-sc0000290-1575043694:329627..330597Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018183-proteinTCONS_00018183-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000290supercontigsc0000290:329627..330597 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.232794	0.454021	0.896175	1.03149	2.38591	1.09153	2.57392	2.52175	1.02009	1.50653	0.471702	0.71318	0.340612	0.385886	24.5605	2.35484	0.209709	0.644834	0.0494929	0.258954	0.495172	0.658711	0.0533833	0.194133	0.299928	0.133839	0	0.0681331	0.0516765	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001881EGF-like_Ca-bd_dom
IPR000742EGF-like_dom
IPR013032EGF-like_CS
IPR009030Growth_fac_rcpt_
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00018183 vs. Swiss-Prot (Human)
Match: DLL1 (Delta-like protein 1 OS=Homo sapiens GN=DLL1 PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 6.440e-44
Identity = 78/201 (38.81%), Postives = 105/201 (52.24%), Query Frame = 1 
Query:  100 KKGYEGKNCEIKTDRCKGVTCRNGGKCKTVGNTYKCECKKGYEGKNCEIKTDRCKGVTCQNGGKCKTVGNT-YKCECKKGYEGKNCEIKTDRCKGVTCRNGGRCKTVGNTYKCECKKGYEGKNCEIKTDRCKGAPCRNGGKCKTVGNTYKCECRKGYEGQHCEIENDRCRGIVCQNGGKCKTVGDSFKCKCRRGFTGKHCE 699
            + GY G  CE+  D C    C+NGG C  + N+Y C C  G+ GK CE+    C    C NGG+C    +  Y C C  GY G NCE K D C    C NG +C  +G+ Y C C+ G+ G++C+   D C  +PC NGG C+   N + C C  GY G++C     RC    C NG  C   G  + C+C RG+ G +C+
Sbjct:  317 RPGYTGATCELGIDECDPSPCKNGGSCTDLENSYSCTCPPGFYGKICELSAMTCADGPCFNGGRCSDSPDGGYSCRCPVGYSGFNCEKKIDYCSSSPCSNGAKCVDLGDAYLCRCQAGFSGRHCDDNVDDCASSPCANGGTCRDGVNDFSCTCPPGYTGRNCSAPVSRCEHAPCHNGATCHERGHRYVCECARGYGGPNCQ 517

HSP 2 Score: 136.732 bits (343), Expect = 2.321e-35
Identity = 67/164 (40.85%), Postives = 86/164 (52.44%), Query Frame = 1 
Query:  100 KKGYEGKNCEIKTDRCKGVTCRNGGKCKTVGNT-YKCECKKGYEGKNCEIKTDRCKGVTCQNGGKCKTVGNTYKCECKKGYEGKNCEIKTDRCKGVTCRNGGRCKTVGNTYKCECKKGYEGKNCEIKTDRCKGAPCRNGGKCKTVGNTYKCECRKGYEGQHCEI 588
              G+ GK CE+    C    C NGG+C    +  Y C C  GY G NCE K D C    C NG KC  +G+ Y C C+ G+ G++C+   D C    C NGG C+   N + C C  GY G+NC     RC+ APC NG  C   G+ Y CEC +GY G +C+ 
Sbjct:  355 PPGFYGKICELSAMTCADGPCFNGGRCSDSPDGGYSCRCPVGYSGFNCEKKIDYCSSSPCSNGAKCVDLGDAYLCRCQAGFSGRHCDDNVDDCASSPCANGGTCRDGVNDFSCTCPPGYTGRNCSAPVSRCEHAPCHNGATCHERGHRYVCECARGYGGPNCQF 518

HSP 3 Score: 133.65 bits (335), Expect = 2.832e-34
Identity = 73/206 (35.44%), Postives = 108/206 (52.43%), Query Frame = 1 
Query:  100 KKGYEGKNCE--IKTDRCKGVTCRNGGKCKTVGNTYKCECKKGYEGKNCEIKTDRCKGV-TCQNGGKCKTVGN-TYKCECKKGYEGKNCEIKTDRCKGVTCRNGGRCKTVGNTYKCECKKGYEGKNCEIKTDRCKGAPCRNGGKCKTVGN-TYKCECRKGYEGQHCEIENDRCRGIVCQNGGKCKTVGDSFKCKCRRGFTGKHCEN 702
            + G++G+ C+  I+   C   TC+           ++C C++G+ G  C    + C     C+NG  C   G  +Y C C+ GY G  CE+  D C    C+NGG C  + N+Y C C  G+ GK CE+    C   PC NGG+C    +  Y C C  GY G +CE + D C    C NG KC  +GD++ C+C+ GF+G+HC++
Sbjct:  246 RVGWQGRYCDECIRYPGCLHGTCQQ---------PWQCNCQEGWGGLFCNQDLNYCTHHKPCKNGATCTNTGQGSYTCSCRPGYTGATCELGIDECDPSPCKNGGSCTDLENSYSCTCPPGFYGKICELSAMTCADGPCFNGGRCSDSPDGGYSCRCPVGYSGFNCEKKIDYCSSSPCSNGAKCVDLGDAYLCRCQAGFSGRHCDD 442

HSP 4 Score: 100.908 bits (250), Expect = 3.168e-23
Identity = 58/171 (33.92%), Postives = 89/171 (52.05%), Query Frame = 1 
Query:  202 KCECKKGYEGKNCE--IKTDRCKGVTCQNGGKCKTVGNTYKCECKKGYEGKNCEIKTDRCKGV-TCRNGGRCKTVGN-TYKCECKKGYEGKNCEIKTDRCKGAPCRNGGKCKTVGNTYKCECRKGYEGQHCEIENDRCRGIVCQNGGKCKTVGDS-FKCKCRRGFTGKHCE 699
            +C+C+ G++G+ C+  I+   C   TCQ           ++C C++G+ G  C    + C     C+NG  C   G  +Y C C+ GY G  CE+  D C  +PC+NGG C  + N+Y C C  G+ G+ CE+    C    C NGG+C    D  + C+C  G++G +CE
Sbjct:  242 ECKCRVGWQGRYCDECIRYPGCLHGTCQQ---------PWQCNCQEGWGGLFCNQDLNYCTHHKPCKNGATCTNTGQGSYTCSCRPGYTGATCELGIDECDPSPCKNGGSCTDLENSYSCTCPPGFYGKICELSAMTCADGPCFNGGRCSDSPDGGYSCRCPVGYSGFNCE 403
The following BLAST results are available for this feature:
BLAST of TCONS_00018183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DLL16.440e-4438.81Delta-like protein 1 OS=Homo sapiens GN=DLL1 PE=1 ... [more]
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