TCONS_00018185 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018185
Unique NameTCONS_00018185
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018185 ID=TCONS_00018185|Name=TCONS_00018185|organism=Clytia hemisphaerica|type=transcript|length=474bp
CAGTGACGTCAGtttgattgaaaatgaaagtaaggAAAACCAGCCTTCAC
CTGTCAAAATAATACCCAAAATAATTGAGAACCAGAAAACTCAGAATAAT
TTAAGCAGCCGTGAAGGAGTGTACCAGTTTATAGAAGAGAATGTCATTAT
GCTTGAAAATAACTCTCATAACGTCATGAAACCTAACCAACTCCAACTGA
AATTGAATGAAATCCAACGCTCTCATTGGCACATACCAGATGTTTACTAT
TTATCATTCTTGAATTATTTACGAGTATCTGAATTCAATAAAGCTTCTAA
AATGCTTTCACTCTATTTTGACCAAAAGAACTTTCAGAATCAAAGCACTA
ATGCAGACCCAAGTGAACAGGAGAATCACCAAAGTATGTTTAAGAGGTTC
AGATATGCAGCTCTCAATCTTGGTATTATGCATTGCCAACATGGAAACTA
TGCTCAAGCAATGACAGTTTTAAA
Run BLAST on NCBI

protein sequence of TCONS_00018185-protein

>TCONS_00018185-protein ID=TCONS_00018185-protein|Name=TCONS_00018185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
SDVSLIENESKENQPSPVKIIPKIIENQKTQNNLSSREGVYQFIEENVIM
LENNSHNVMKPNQLQLKLNEIQRSHWHIPDVYYLSFLNYLRVSEFNKASK
MLSLYFDQKNFQNQSTNADPSEQENHQSMFKRFRYAALNLGIMHCQHGNY
AQAMTVL
Run BLAST on NCBI

transcript from alignment at sc0000290:347513..347986

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018185 ID=TCONS_00018185|Name=TCONS_00018185|organism=Clytia hemisphaerica|type=transcript|length=474bp|location=Sequence derived from alignment at sc0000290:347513..347986 (Clytia hemisphaerica)
TTTAAAACTGTCATTGCTTGAGCATAGTTTCCATGTTGGCAATGCATAAT
ACCAAGATTGAGAGCTGCATATCTGAACCTCTTAAACATACTTTGGTGAT
TCTCCTGTTCACTTGGGTCTGCATTAGTGCTTTGATTCTGAAAGTTCTTT
TGGTCAAAATAGAGTGAAAGCATTTTAGAAGCTTTATTGAATTCAGATAC
TCGTAAATAATTCAAGAATGATAAATAGTAAACATCTGGTATGTGCCAAT
GAGAGCGTTGGATTTCATTCAATTTCAGTTGGAGTTGGTTAGGTTTCATG
ACGTTATGAGAGTTATTTTCAAGCATAATGACATTCTCTTCTATAAACTG
GTACACTCCTTCACGGCTGCTTAAATTATTCTGAGTTTTCTGGTTCTCAA
TTATTTTGGGTATTATTTTGACAGGTGAAGGCTGGTTTTccttactttca
ttttcaatcaaaCTGACGTCACTG

Coding sequence (CDS) from alignment at sc0000290:347513..347986

>TCONS_00018185 ID=TCONS_00018185|Name=TCONS_00018185|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at sc0000290:347513..347986 (Clytia hemisphaerica)
TAAAACTGTCATTGCTTGAGCATAGTTTCCATGTTGGCAATGCATAATAC
CAAGATTGAGAGCTGCATATCTGAACCTCTTAAACATACTTTGGTGATTC
TCCTGTTCACTTGGGTCTGCATTAGTGCTTTGATTCTGAAAGTTCTTTTG
GTCAAAATAGAGTGAAAGCATTTTAGAAGCTTTATTGAATTCAGATACTC
GTAAATAATTCAAGAATGATAAATAGTAAACATCTGGTATGTGCCAATGA
GAGCGTTGGATTTCATTCAATTTCAGTTGGAGTTGGTTAGGTTTCATGAC
GTTATGAGAGTTATTTTCAAGCATAATGACATTCTCTTCTATAAACTGGT
ACACTCCTTCACGGCTGCTTAAATTATTCTGAGTTTTCTGGTTCTCAATT
ATTTTGGGTATTATTTTGACAGGTGAAGGCTGGTTTTccttactttcatt
ttcaatcaaaCTGACGTCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010215XLOC_010215Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018185-proteinTCONS_00018185-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018185-exon-sc0000290-1491911889:347513..347986TCONS_00018185-exon-sc0000290-1491911889:347513..347986Clytia hemisphaericaexon
TCONS_00018185-exon-sc0000290-1510915933:347513..347986TCONS_00018185-exon-sc0000290-1510915933:347513..347986Clytia hemisphaericaexon
TCONS_00018185-exon-sc0000290-1575043694:347513..347986TCONS_00018185-exon-sc0000290-1575043694:347513..347986Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000290supercontigsc0000290:347513..347986 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.7813	10.1831	6.66969	2.66942	32.8587	25.9654	27.3673	37.3841	20.9839	15.7908	16.8189	9.80784	11.0407	9.89398	2.35664	4.16066	4.12058	3.29636	4.12715	1.19138	3.36547	3.78821	16.5782	13.816	8.33687	23.8608	0.367147	1.56732	9.36145	9.23505
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR026000Apc5_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018185 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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