TCONS_00018190 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018190
Unique NameTCONS_00018190
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length874

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018190 ID=TCONS_00018190|Name=TCONS_00018190|organism=Clytia hemisphaerica|type=transcript|length=874bp
GGATGAATTTTGTAGTTAAAAGCATCGAAAAACAAATCAGTTTCTCGTCG
ATCAGGAAGATTCAAGAATCAAAATGAAGATTGCATTCGTTCTTCTTTTC
GCTTTCATCGCTGCTTGCAGTGCATCACACAGTCCACCAAGGCACCCAAG
ATGCCGCGGATTTCTTTGTCAATACCGACGACGTGCACCTGTTTGTTCTG
CTTTCAAAGGATGTAACGCACACAATGTTGGAGCACTCTTCAGATATTCA
GACTATTACCCAAACTACTGGGTTCAATGCTCTAACACAGGACCAGTTTG
CCGCTCATGTCCAGATTATCAAATCTACAACGAAAAAAACAGCGCTTGTG
TGAGAGCTGCACGAAGCTACTTGAGATACCCTCCTTATTGCCCACCAACT
TTCTGTCATGGACTTACAGATCGTCTCTACCCATTCAACGATTATTACTA
CCCAAGATACTTTGTGCAATGCTCCAATGGAACACCATACTTGAAAGCAT
GCCCCGCTACAACTGTTTTCAGTTACTCAGAACAAGTTTGCATCCACCGA
TTCTCCTACCATCCTTGGTAATTCATCTCACAAATAACGCTGACTCAGCA
AATTGAGACACGACTAAGGATgatttattttgtaatttttttctttaaga
atgTTATATATACGATGAAATTTAGAATATAAGCCGGTTTATATTTAACA
CATTCTTACATTTGGATTCCCCTTTCTTACAGGCCCTGTTGAAAATATTG
TCTTCAGTTGATAATCTCAtagttgattgaaattcgattgacgtttttgc
ttacgttaatttgtaatttcccgcgaacttgtaatttccctcctagcttt
tgtaatttccctcctagattttgt
Run BLAST on NCBI

protein sequence of TCONS_00018190-protein

>TCONS_00018190-protein ID=TCONS_00018190-protein|Name=TCONS_00018190-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MKIAFVLLFAFIAACSASHSPPRHPRCRGFLCQYRRRAPVCSAFKGCNAH
NVGALFRYSDYYPNYWVQCSNTGPVCRSCPDYQIYNEKNSACVRAARSYL
RYPPYCPPTFCHGLTDRLYPFNDYYYPRYFVQCSNGTPYLKACPATTVFS
YSEQVCIHRFSYHPW
Run BLAST on NCBI

transcript from alignment at sc0000291:79588..81108+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018190 ID=TCONS_00018190|Name=TCONS_00018190|organism=Clytia hemisphaerica|type=transcript|length=1521bp|location=Sequence derived from alignment at sc0000291:79588..81108+ (Clytia hemisphaerica)
GGATGAATTTTGTAGTTAAAAGCATCGAAAAACAAATCAGTTTCTCGTCG
ATCAGGAAGATTCAAGAATCAAAATGAAGATTGCATTCGTTCTTCTTTTC
GCTTTCATCGCTGGTAAGTTTGATCCTCcttcaagaaaaaatattatttt
ttctcaaattttgcctTCTTTAACTTCAACCTTCAACCACAATCACTAAA
GAAACAAGACTCGATcacaatataaacaaaacacaaacaaaagATGACTG
TTCTGTTTTCCCTTGGGGTGGATCCTTTTTCTCTCCAAAATTCTAACCAT
AATTGTTGAACCCAAAATGATAAGCTCCCAACGTTTAAGAGATTTATTCT
ATATCCTACACTATTTTTAAGACTGTTATGCTGTAACAGCCCCCTTTGTT
ATCCCTTTTTAGCTTGCAGTGCATCACACAGTCCACCAAGGCACCCAAGA
TGCCGCGGATTTCTTTGTCAATACCGACGACGTGCACCTGTTTGTAAGTA
AAAAAGTTTCAATAGTTTAAGCGTTTCATTTTTAGCATGTCCAAAACTGA
TGAATGAAAAACTGAATGAGTTTCCTTCAAAGAAATTATCTTTTTCTGTC
ATTATTAAAAGGCTGCTGAAATTCTCactaattttcaataaaaataaaat
tgaatattttctcGCCAGGTTCTGCTTTCAAAGGATGTAACGCACACAAT
GTTGGAGCACTCTTCAGATATTCAGACTATTACCCAAACTACTGGGTTCA
ATGCTCTAACACAGGACCAGTTTGCCGCTCATGTCCAGATTATCAAATCT
ACAACGAAAAAAACAGCGCTTGTGTGAGAGCTGCACGAAGCTACTTGAGA
TACCCTCCTTATTGTAAGTgcttttatttagttttttcttagtaaattaa
aaaaaaaaacagagatgCTTTTTTACGCCAAAAAGGATGTCACTCTTTCA
CTCTAAATGAACAcaagaaaagcaaaaaattcacctttcttttcaccaat
tttgtataaaaatgtttttatttttatgatttaCAGGCCCACCAACTTTC
TGTCATGGACTTACAGATCGTCTCTACCCATTCAACGATTATTACTACCC
AAGATACTTTGTGCAATGCTCCAATGGAACACCATACTTGAAAGCATGCC
CCGCTACAACTGTTTTCAGTTACTCAGAACAAGTTTGCATCCACCGATTC
TCCTACCATCCTTGGTAATTCATCTCACAAATAACGCTGACTCAGCAAAT
TGAGACACGACTAAGGATgatttattttgtaatttttttctttaagaatg
TTATATATACGATGAAATTTAGAATATAAGCCGGTTTATATTTAACACAT
TCTTACATTTGGATTCCCCTTTCTTACAGGCCCTGTTGAAAATATTGTCT
TCAGTTGATAATCTCAtagttgattgaaattcgattgacgtttttgctta
cgttaatttgtaatttcccgcgaacttgtaatttccctcctagcttttgt
aatttccctcctagattttgt

Coding sequence (CDS) from alignment at sc0000291:79588..81108+

>TCONS_00018190 ID=TCONS_00018190|Name=TCONS_00018190|organism=Clytia hemisphaerica|type=CDS|length=1992bp|location=Sequence derived from alignment at sc0000291:79588..81108+ (Clytia hemisphaerica)
ATGAAGATTGCATTCGTTCTTCTTTTCGCTTTCATCGCTGCTTGCAGTGC
ATCACACAGTCCACCAAGGCACCCAAGATGCCGCGGATTTCTTTGTCAAT
ACCGACGACGTGCACCTGTTTGTTCTGCTTTCAAAGGATGTAACGCACAC
AATGTTGGAGCACTCTTCAGATATTCAGACTATTACCCAAACTACTGGGT
TCAATGCTCTAACACAGGACCAGTTTGCCGCTCATGTCCAGATTATCAAA
TCTACAACGAAAAAAACAGCGCTTGTGTGAGAGCTGCACGAAGCTACTTG
AGATACCCTCCTTATTGCCCACCAACTTTCTGTCATGGACTTACAGATCG
TCTCTACCCATTCAACGATTATTACTACCCAAGATACTTTGTGCAATGCT
CCAATGGAACACCATACTTGAAAGCATGCCCCGCTACAACTGTTTTCAGT
TACTCAGAACAAGTTTGCATCCACCGATTCTCCTACCATCCTTGGTAAAT
GAAGATTGCATTCGTTCTTCTTTTCGCTTTCATCGCTGCTTGCAGTGCAT
CACACAGTCCACCAAGGCACCCAAGATGCCGCGGATTTCTTTGTCAATAC
CGACGACGTGCACCTGTTTGTTCTGCTTTCAAAGGATGTAACGCACACAA
TGTTGGAGCACTCTTCAGATATTCAGACTATTACCCAAACTACTGGGTTC
AATGCTCTAACACAGGACCAGTTTGCCGCTCATGTCCAGATTATCAAATC
TACAACGAAAAAAACAGCGCTTGTGTGAGAGCTGCACGAAGCTACTTGAG
ATACCCTCCTTATTGCCCACCAACTTTCTGTCATGGACTTACAGATCGTC
TCTACCCATTCAACGATTATTACTACCCAAGATACTTTGTGCAATGCTCC
AATGGAACACCATACTTGAAAGCATGCCCCGCTACAACTGTTTTCAGTTA
CTCAGAACAAGTTTGCATCCACCGATTCTCCTACCATCCTTGGTAAATGA
AGATTGCATTCGTTCTTCTTTTCGCTTTCATCGCTGCTTGCAGTGCATCA
CACAGTCCACCAAGGCACCCAAGATGCCGCGGATTTCTTTGTCAATACCG
ACGACGTGCACCTGTTTGTTCTGCTTTCAAAGGATGTAACGCACACAATG
TTGGAGCACTCTTCAGATATTCAGACTATTACCCAAACTACTGGGTTCAA
TGCTCTAACACAGGACCAGTTTGCCGCTCATGTCCAGATTATCAAATCTA
CAACGAAAAAAACAGCGCTTGTGTGAGAGCTGCACGAAGCTACTTGAGAT
ACCCTCCTTATTGCCCACCAACTTTCTGTCATGGACTTACAGATCGTCTC
TACCCATTCAACGATTATTACTACCCAAGATACTTTGTGCAATGCTCCAA
TGGAACACCATACTTGAAAGCATGCCCCGCTACAACTGTTTTCAGTTACT
CAGAACAAGTTTGCATCCACCGATTCTCCTACCATCCTTGGTAAATGAAG
ATTGCATTCGTTCTTCTTTTCGCTTTCATCGCTGCTTGCAGTGCATCACA
CAGTCCACCAAGGCACCCAAGATGCCGCGGATTTCTTTGTCAATACCGAC
GACGTGCACCTGTTTGTTCTGCTTTCAAAGGATGTAACGCACACAATGTT
GGAGCACTCTTCAGATATTCAGACTATTACCCAAACTACTGGGTTCAATG
CTCTAACACAGGACCAGTTTGCCGCTCATGTCCAGATTATCAAATCTACA
ACGAAAAAAACAGCGCTTGTGTGAGAGCTGCACGAAGCTACTTGAGATAC
CCTCCTTATTGCCCACCAACTTTCTGTCATGGACTTACAGATCGTCTCTA
CCCATTCAACGATTATTACTACCCAAGATACTTTGTGCAATGCTCCAATG
GAACACCATACTTGAAAGCATGCCCCGCTACAACTGTTTTCAGTTACTCA
GAACAAGTTTGCATCCACCGATTCTCCTACCATCCTTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010220XLOC_010220Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018190-exon-sc0000291-1491911889:79588..79700TCONS_00018190-exon-sc0000291-1491911889:79588..79700Clytia hemisphaericaexon
TCONS_00018190-exon-sc0000291-1510915933:79588..79700TCONS_00018190-exon-sc0000291-1510915933:79588..79700Clytia hemisphaericaexon
TCONS_00018190-exon-sc0000291-1575043694:79588..79700TCONS_00018190-exon-sc0000291-1575043694:79588..79700Clytia hemisphaericaexon
TCONS_00018190-exon-sc0000291-1491911889:80000..80080TCONS_00018190-exon-sc0000291-1491911889:80000..80080Clytia hemisphaericaexon
TCONS_00018190-exon-sc0000291-1510915933:80000..80080TCONS_00018190-exon-sc0000291-1510915933:80000..80080Clytia hemisphaericaexon
TCONS_00018190-exon-sc0000291-1575043694:80000..80080TCONS_00018190-exon-sc0000291-1575043694:80000..80080Clytia hemisphaericaexon
TCONS_00018190-exon-sc0000291-1491911889:80256..80450TCONS_00018190-exon-sc0000291-1491911889:80256..80450Clytia hemisphaericaexon
TCONS_00018190-exon-sc0000291-1510915933:80256..80450TCONS_00018190-exon-sc0000291-1510915933:80256..80450Clytia hemisphaericaexon
TCONS_00018190-exon-sc0000291-1575043694:80256..80450TCONS_00018190-exon-sc0000291-1575043694:80256..80450Clytia hemisphaericaexon
TCONS_00018190-exon-sc0000291-1491911889:80624..81108TCONS_00018190-exon-sc0000291-1491911889:80624..81108Clytia hemisphaericaexon
TCONS_00018190-exon-sc0000291-1510915933:80624..81108TCONS_00018190-exon-sc0000291-1510915933:80624..81108Clytia hemisphaericaexon
TCONS_00018190-exon-sc0000291-1575043694:80624..81108TCONS_00018190-exon-sc0000291-1575043694:80624..81108Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018190-proteinTCONS_00018190-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000291supercontigsc0000291:79588..81108 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.96399	2.05916	1.145	1.70961	2.49235	1.06571	2.21783	2.50363	0.39117	1.53341	1.54538	0.422124	91.4819	169.107	6.77332	5.3457	14.3283	94.2999	0.230482	4.86735	1.20635	0.970349	2.38162	1.23303	0.905455	1.48407	0.739432	1.08781	1.32333	0.617259
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018190 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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