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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018210 ID=TCONS_00018210|Name=TCONS_00018210|organism=Clytia hemisphaerica|type=transcript|length=2891bpRun BLAST on NCBI protein sequence of TCONS_00018210-protein >TCONS_00018210-protein ID=TCONS_00018210-protein|Name=TCONS_00018210-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp MAGAAAAHGLKKMNLSGKNLNFIKNLALKDCENSIPWLLNAHSITHTRNLRun BLAST on NCBI transcript from alignment at sc0000291:27906..51656- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018210 ID=TCONS_00018210|Name=TCONS_00018210|organism=Clytia hemisphaerica|type=transcript|length=23751bp|location=Sequence derived from alignment at sc0000291:27906..51656- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000291:27906..51656- >TCONS_00018210 ID=TCONS_00018210|Name=TCONS_00018210|organism=Clytia hemisphaerica|type=CDS|length=7776bp|location=Sequence derived from alignment at sc0000291:27906..51656- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018210 vs. Swiss-Prot (Human)
Match: DNJA3 (DnaJ homolog subfamily A member 3, mitochondrial OS=Homo sapiens GN=DNAJA3 PE=1 SV=2) HSP 1 Score: 197.593 bits (501), Expect = 3.150e-54 Identity = 107/244 (43.85%), Postives = 148/244 (60.66%), Query Frame = 2
Query: 848 ATFQTSSAALSRKDYYSILGVKKGTSASDIKKAYYKLAKQYHPDTNKN-AGAEQKFQEIQQAYEVLSDDKKRAAYDQFGQTDFSXXXXXXXXXXXXXXXXXXXXQGNINMDDVFKQFFGERAGGFSQYGGSGFEQA-TRAQNVVMNLSFMESVHGGNKDLRIQTQEVCGRCSGKRAEPGTTLQTCPTCRGSGEETVSTGFFNMRSTCRRCQGQGTIIQTPCRKCRGKGSVMENKTVSIPVPAGM 1573
A+F TS A L+++DYY ILGV + S +IKKAYY+LAK+YHPDTNK+ A++KF ++ +AYEVLSD+ KR YD +G F G + ++ +++F++ FGE FS F+ + Q M L+F ++ G NK+ + + C RC+GK EPGT +Q C C GSG ET++TG F MRSTCRRC G+G+II +PC CRG G + K V IPVPAG+
Sbjct: 81 ASFHTS-APLAKEDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSAGFDPGASGSQHSYWKGGP-------TVDPEELFRKIFGE----FSSSSFGDFQTVFDQPQEYFMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRVMIPVPAGV 312 HSP 2 Score: 150.984 bits (380), Expect = 2.505e-38 Identity = 65/131 (49.62%), Postives = 99/131 (75.57%), Query Frame = 3
Query: 1728 GIEDGQTVRVPISYGELFVTFKVAQSNIFKRDGFDVASDISISFAQAILGGKTKSRGLDGEMEINIPPGAQSHQQMRLTGKGIQRLNGFGKGDHYLNIKIHLPKYITEDQKELLLKFAMEDDTIRGTVNGL 2120
G+EDGQTVR+P+ E+F+TF+V +S +F+RDG D+ SD+ IS AQA+LGG +++GL + + IPPG Q+ Q++R+ GKGI R+N +G GDHY++IKI +PK +T Q+ L+L +A ++ + GTVNG+
Sbjct: 311 GVEDGQTVRMPVGKREIFITFRVQKSPVFRRDGADIHSDLFISIAQALLGGTARAQGLYETINVTIPPGTQTDQKIRMGGKGIPRINSYGYGDHYIHIKIRVPKRLTSRQQSLILSYAEDETDVEGTVNGV 441 The following BLAST results are available for this feature:
BLAST of TCONS_00018210 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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