TCONS_00018231 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018231
Unique Name	TCONS_00018231
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1810

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000291:358651..364430-

transcript sequence

>TCONS_00018231 ID=TCONS_00018231|Name=TCONS_00018231|organism=Clytia hemisphaerica|type=transcript|length=1810bp
GTTAAATTTGTTCTTGTGCTCCCCTCCTCTGATGAACATGGGTGTTGGCC
ACAAGTGGCTTTATTAATGTCACACCATattataaaacaaaattgaaatg
attATTATATTAACATTTTTCACTTCCACAATAGAAAACATATTATTGAA
TTataatagaaaaatcaaaacaaaattgtacTGAGATCAGGTTAGTTTGT
TCAAGATGacaaaagaagaagaagcaaaTGCAGCATCAATTGATGTTGTG
CGTATCGATTCAACTGATACTGATCGCAAACCGAAATCATGTTGTTTGTG
TTTGAATGTCAGAATTGGTACTATCATGATTGGTCTTTTCAACTTGGTTT
GCCATGCTTTTTGGATTGTATCCCTTTCTTCGTACATCAAAAAGCATCAG
TCAACTGAATTGtctgaacatttgaaagaatgGAAAGTGATCAATCATTT
CAGTGATTTTTCTCAACAACACCAACAAAATATCAACCACAATATGATTG
CTATGGTTGTTGCTTGCCTGAGCTTTTTGATTGTTGTCATGTTGGTCTAT
GGAGCCACACTGAGATTGTCCGGATACATCTTGCCCTTCTTCTGTTTACA
AGTGTTCGATTTGTGTTTATCGGTCCTCGTCTTTGCCACCGTTACCAGCT
ATGCACCACAActgaaatactacttggaagtcTCCGCCCATGATGAAGTC
CATCGTCAATACCTTCAAAATATGAGTTTAACTCATTTCAGAATGGTCTT
GTTTTCTTTCTGGATTGTCGTCCTTGCTGTCAAGTATTATTTCGCTAATA
CTGTTTGGGAATGTTATTGCCATTGCAAGAAAATGGAAGAACGAAGAAAC
GTCCGCACTGACAACCAAGCTGCCATTTTGTTGTACCAAGGAGATATGGA
AACCATGAATTTGTTGCCAACATACGATGACGTTGTCAAGACCAGCCCTC
CACCTGCTTACATCCAATAAACGTACAAAGTATGTCCATTCGAAATGACG
GTGTGTGTCAACTCGCACGAGGTGTGTGGGCGCAGTTTTTCACCCTCATT
CATTCATAATTTACTCGCAAATTTACtcagtttttctaaaaaaataaaaa
ctttattatCATGGTAATCTTTTATAGTTTTGAAGGCTGTAAGGTACTTC
TTGGGAATTGTATTGAAAATACTTTTAGTTCTGTTTTAAATTAAGTTTAT
TAGCTAAGTATTGAGAGGGAATCAATTGTGtgctttcttttatttgaaga
TACTATTTATAACAATGAAACTTCGATTTGGGACTTGcttttttttatag
attttaaaGATTCTGACAGGTAGCTTAAGAATTTGATTTCTTAAAAACTT
TGCTGGCATGtacaatttataaaattttatcttTAACAATTTGTCTTATT
CCATTTGACCTAAACTTTTTTCATACGCGGGGTACAGATGagatttgaat
atcttttcgtcaaaaaagaaattcagcTGCTTTCTGCATCCTTCTCATTT
TTTTCCATTGtacttttttcagtttttgtatcaaaatttcttatttttct
cgGAAAAAGTATGTGCTGGTAATTCTTCCTtctctattttttttaaactt
tctttaaatAGTTGTGAATAAAAAAAACTCTCTCCTCTTCAGGAGATTTC
ACCTGCCCAAATTTCGTAAAAATACCTCCGGCAAAATCTATTACTCTAGC
TGTATTTTTCAAGATATAttcttttgatgaaaaatagctTCAATTAGTAG
GGGGCAAGCCttgggttccgtgacatcttttctacgacctagccattttt
agtctattcc

Run BLAST on NCBI

transcript from alignment at sc0000291:358651..364430-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018231 ID=TCONS_00018231|Name=TCONS_00018231|organism=Clytia hemisphaerica|type=transcript|length=5780bp|location=Sequence derived from alignment at sc0000291:358651..364430- (Clytia hemisphaerica)
GTTAAATTTGTTCTTGTGCTCCCCTCCTCTGATGAACATGGGTGTTGGCC
ACAAGTGGCTTTATTAATGTCACACCATATTATAAAACAAAATTGAAATG
ATTATTATATTAACATTTTTCACTTCCACAATAGAAAACATATTATTGAA
TTATAATAGAAAAATCAAAACAAAATTGTACTGAGATCAGGTTAGTTTGT
TCAAGATGACAAAAGAAGAAGAAGCAAATGCAGCATCAATTGATGTTGTG
CGTATCGATTCAACTGATACTGATCGCAAACCGAAATCATGTTGTTTGTG
TTTGAATGTCAGAATTGGTACTATCATGATTGGTCTTTTCAACTTGGTAT
GAACAATGTTGTAATTTCATTATTTTGAGGGACAAAATAATAGCAAAACA
GTTGAAAGCTATCATGAAAATCACATTCCTGTATATTATATTTTTGTACA
GAAAACATGTACATGTCAACATCATTTGCCATATATAAATAGTACTCAAA
ACGTTTTTAGTTTTGTATCAATATTGTAAGGGTCTTATGGAAATACATGT
TAGATCTGTAAAACATTAAGTTGAATTAGTCATTCTATTTGAAAACAAGG
CCATCAATGAGTCTGTTTTTCTAGATTGAGGGAAGAGTAAGCACTCAATT
TAAAGATCCTCTGCAGAGTATTAAAGCCTTTCCAAATTCTTTTAGGTTTG
CCATGCTTTTTGGATTGTATCCCTTTCTTCGTACATCAAAAAGCATCAGT
CAACTGAATTGTCTAAACATTTGAAAGAATGGAAAGTGATCAATCATTTC
AGTGATTTTGCTCAACAACACCAACAAAATAGTAAGTGGTCTATTTGATT
CAATCTATTTGGTGCGAGTTGCTATAATACTTATTTATAAGAAAATGAAA
ATTTAAATTCTATAAAATGAACTTAATCCTTCCTATTTCGTGAAAGAAGC
TAGTAATGGTCTATAATGATTTTATTTTGTAGTCAACCACAATATGATTG
CTATGGTTGTTGCTTGCCTGAGCTTTTTGATTGTTGTCATGTTGGTCTAT
GGAGCCACACTGGTAAGCATTACAAAATGCTAATCTTACTTATATACAAT
TATATGTATTGTTCTAGATGTTTGTTTATATTATTGACTTATGATTTTGT
GTGATTTCTCGTGGAATTATTACTAAATATTGTTATATGCTTACTCTAAA
GGGTTATATTTGTTTTATGCTTTTGCTGTAGATAAACTAAAGTTTTTGAA
ATTGAACTGGTCGAAATGAATAAAGAACACTCGAATGTTTTTTCTAAATA
AGTATTGCACATGACATTATGTTTTTTACAGAGATTGTCCGGATACATCT
TGCCCTTCTTCTGTTTGCAAGTGTTCGATTTGTGTTTATCTGTTCTGGTC
TTTGCCACCGTTACCAGCTATGCACCACAACTGAAATACTACTTGGAAGT
CTCCGTAAGTATCACTCCATCTATGTTTATGATACTTCCCAATATTATAT
CGATTTTGTGAACAGGTGTCGGGTTCTACATTTGTATAAATGTTGTTTCT
TTAAAGCTACAGTAAGCTGTATCTCCTTCCCTTCGAGTTAAAAACCTAAA
AGCCNCTGTCAACATCATTTGCCATATATAAATAGTACTCAAAACGTTTG
TAGTTTTGTATCAATATTGTAAGGGTCTTATGGAAATACATGTTAGATCT
GTAAAACATTAAGTTGAATTAGTCATTCTATTTGAAAAAAAGGCCATCAA
TGAGTCTGTTTTTCTAGATTGAGGGAAGAGTAAGCACTCAATTTAAAGAC
CCTCTGCAGAGTATTAAAGCCTTTCCAAATTCTTTTAGGTTTGCCATGCT
TTTTGGATTGTATCCCTTTCTTCGTACATCAAAAAGCATCAGTCAACTGA
ATTGTCTGAACATTTGAAAGAATGGAAAGTGATCAATCATTTCAGTGATT
TTTCTCAACAACACCAACAAAATAGTAAGTGGTCTATTTGATTCAATCTA
TTTGGTGCGAGTTGCTATAATACTTATTTATAAGAAAATGAAAATTTAAA
TTCTATAAAATGAACTTAATCCTTCCTATTTCGTGAAAGAAGCTAGTAAT
GGTCTATAATGATTTTATTTTGTAGTCAACCACAATATGATTGCTATGGT
TGTTGCTTGCCTGAGCTTTTTGATTGTTGTCATGTTGGTCTATGGAGCCA
CACTGGTAAGCAATACAAAATGCTAATCTTACTCATAATTATATACAATT
ATATGTATTGTTCTAGCTGTTTGTTTATATTATTGACTTATGATTTTGTG
TGATTTCTCTTGGAATTATTACTAAATATTGTTATATGCTTACTCTAAAG
GGTTATATTTGTTTTATGCTTTTGCTGTAGATAAACTAAAGTTTTTGAAA
TTGAACTGGTCGAAATGAATAAAGAACACTCGAATGTTTTTTCTAAATAA
GTATTGCACATGACATTATGTTTTTTTACAGAGATTGTCCGGATACATCT
TGCCCTTCTTCTGTTTACAAGTGTTCGATTTGTGTTTATCGGTCCTCGTC
TTTGCCACCGTTACCAGCTATGCACCACAACTGAAATACTACTTGGAAGT
CTCCGTAAGTACCACTCCAACTATATTTATGATACTTCCTAATATTGTAT
CGATTTTGTGCACCGGTGTTGGGTTCTACTTTTGCTTTAAATATTGTTTC
TTTAAAGCTACAGTGAGCCATGTCATATCTCATTCACTCCGAGTTAAAAA
CCTAAAAGTGTAAATCACTTTGAGGCCAGATAAAAAAAATTCAGTGATCC
CAAATGCCAATGCATCCCCCAGGAAAGCCAATTCACTTTTTTTAAGTAGC
TAGATTCAACATACATTTCAACATACATTTCAAATGAATCAATTATTCAT
TTGTTCTCTTTACAGGCCCATGATGAAGTCCATCGTCAATACCTTCAAAA
TATGAGTTTAACTCATTTCAGAATGGTCTTGTTTTCTTTCTGGATTGTCG
TCCTTGCTGTCAAGGTATTGATTTTGTCATTTTAATTTAACTTTCAAATT
AAGATTACAGTCAACTCTCTCTTATTCGAATCTTTCTGTAATTCGAATCC
TTTTCTAATTTGAAGAAAGTTTTTGGTTCCTCGAAGATCGAATTAGAAAG
AGTAAACTGTATTTGTCTAAAATTTATTTTTAAAAAGATGTCTTAAAATT
TTGTCTCATGGGTGGCCCTAAGAATACTGAGAATAAACACAAAAAGGCTC
TTTGATGTTGATGTGACTTTACCATTTTTGGGAAGATGAGGAATAGCTCA
TACGAGGAAATATTTTCTGGTATGATATCATTTTGTAACAGTTTAAGATT
GAATTAGAAAGAAGTATAATATAATTTTCTATAATTATCTGTTTTCTAAA
ACATCAATCTCGTTTAACATCATAGTATTATTTCGCTAATACTGTTTGGG
AATGTTATTGCCATTGCAAGAAAATGGAAGAACGAAGAAACGTCCGCACT
GACAACCAAGCTGCCATTTTGTTGTACCAAGGAGATATGGAAACCATGGT
AACTCTTCTCTTTTGTTGTTAATGTTAACGTCTCTGATGTCATTTAACAC
AACAAAATACCGTATTTGTTTGCTTAGACCTACACGCCACTAAAATTCAT
GATTATGTGACCCTATAATTATTATCTTGGTTTTAAGTGGGTATGTTTGG
TTAGGTGGATAATTAGTCAAAAGCTTTTGAAAACTATTTTTACGAATTCG
GCTCTTCCAGAAAAAATTCGTTCATGGGGGTGGAGGATATTATTTTTTCA
ATGATCTACCCCTGGGCATTTAAATTTTTCACCCCCCGGACACGCGTTTT
ATCCCTGGACAAGCATCAAATCGGCCCCCTGGACAGTATGTCTTCTACCC
CCTACGAGGGTTTTTTTTCTGGAAGAACCCATTTCAAATAATGGTAGGGA
AAGTTAACAAAATGAGGGGTGTTCGAATTGATCAGTCTAATTTTTCATAC
ACTGACAACTTTTTAGTGGGTGGGCGGCTCTAACGAGACCAATGTCAACA
ACAAAATACAGTGTAATGGTTTTTCTATGTTTGGCATACGAATACGAAAC
TCAATATTCAAACATTTTATTTTCGTCTATTTTCTCTGTGGTCAAAATAC
TCTTGTTACAATTTTCTTCGTTAGTCTTTTTCTTGTGATCACATTTCATC
TTACGATGTGTGGAGGTCGTCTTTTGTCAACAAACTATCATCTCATATCC
ACGTGGTCTAATTTCCATAATGGCGGATAATACAATTTTCGTAGCTCTCT
TGACTGAATAGATGAAATTATACAATATAAGAAAAAAAGTCCTCAAATTT
AGCATGCCTTAAAATTCTGTTCGTAATATACGTGCACCATTTTGAAAATA
AATCCAAGCTTACTGTACACTCTGAAGATTGTCGGAGTCAAAATAAAACT
ATAATTTAAGTTAAAAGAGAATTTCCGATTCTAACACTTATTAGTACTTC
CATTTCCGCAGGTTTACCAACCATAACTTACGTTTAGACAGATACTTCAA
TGGGGAAAACTTAACCGGGGAAAAGTGACGAGTTTTTTAGGCAAGTCCCC
CCTCCCCACGAAAGTATTTTTGCTCAACTTCCAGGGGGTTGGTATACAGA
TTTCCAAAAAGTTGACCAAGTTTCCCCCCGGTAGAATAAAGATATACTAT
AGTTTTGTTAATGTCATTAATATTGATTAATCATTTTGTTCTTCTCAGAA
TTTGTTNAACGAAAATTTTGCCTGACTAAATTTTTTACCTTCAAATTTGA
AAAAAAACGGTAGAATAAAAATATACTATAGTTTTGTTAATGTCATTAAT
ATCGATAAATCATTTTGTTCTTCTCAGAATTTGTTGCCAACATACGATGA
CGTTGTCAAGACCAGCCCTCCACCTGCTTACATCCAATAAACGTACAAAG
TATGTCCATTCGAAATGACGGTGTGTGTCAACTCGCACGAGGTGTGTGGG
CGCAGTTTTTCACCCTCATTCATTCATAATTTACTCGCAAATTTACTCAG
TTTTTCTAAAAAAATAAAAACTTTATTATCATGGTAATCTTTTATAGTTT
TGAAGGCTGTAAGGTACTTCTTGGGAATTGTATTGAAAATACTTTTAGTT
CTGTTTTAAATTAAGTTTATTAGCTAAGTATTGAGAGGGAATCAATTGTG
TGCTTTCTTTTATTTGAAGATACTATTTATAACAATGAAACTTCGATTTG
GGACTTGCTTTTTTTTATAGATTTTAAAGATTCTGACAGGTAGCTTAAGA
ATTTGATTTCTTAAAAACTTTGCTGGCATGTACAATTTATAAAATTTTAT
CTTTAACAATTTGTCTTATTCCATTTGACCTAAACTTTTTTCATACGCGG
GGTACAGATGAGATTTGAATATCTTTTCGTCAAAAAAGAAATTCAGCTGC
TTTCTGCATCCTTCTCATTTTTTTCCATTGTACTTTTTTCAGTTTTTGTA
TCAAAATTTCTTATTTTTCTCGGAAAAAGTATGTGCTGGTAATTCTTCCT
TCTCTATTTTTTTTAAACTTTCTTTAAATAGTTGTGAATAAAAAAAACTC
TCTCCTCTTCAGGAGATTTCACCTGCCCAAATTTCGTAAAAATACCTCCG
GCAAAATCTATTACTCTAGCTGTATTTTTCAAGATATATTCTTTTGATGA
AAAATAGCTTCAATTAGTAGGGGGCAAGCCTTGGGTTCCGTGACATCTTT
TCTACGACCTAGCCATTTTTAGTCTATTCC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010244	XLOC_010244	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000291	supercontig	sc0000291:358651..364430 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
46.8057	43.7745	55.6992	45.561	14.9615	11.7625	32.3331	31.1776	34.687	31.8675	26.8736	28.2222	31.92	30.1235	17.4514	18.5463	16.7692	19.215	22.978	25.0701	43.1185	38.2432	30.999	30.703	39.7088	44.8068	42.6953	43.5577	43.0366	41.8605

Blast

[Close]

BLAST of TCONS_00018231 vs. Swiss-Prot (Human)
Match: LAP4B (Lysosomal-associated transmembrane protein 4B OS=Homo sapiens GN=LAPTM4B PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.785e-20
Identity = 70/233 (30.04%), Postives = 112/233 (48.07%), Query Frame = 2

Query:  284 KSCCLCLNVRIGTIMIGLFNLVCHAF-WIVSLSSYIKKHQSTELSEHLKEWKVINHFSDFSXXXXXXXXXXMIAMVVACLSFLIVVMLVYGATLRLSGYILPFFCLQVFDLCLSVLVFATVTSYAPQLKYYLEVSAHDEVHRQYLQNMSLTHFRMVLFSFWIVVLAVKYYFANTVWECYCHCKKMEERRNVRTDNQAAILLYQGDMETMNLLPTYDDV----VKTSPPPAYIQ 967
             SCCLC +VR GTI++G++ L+ +A   ++ LS+     Q    S  L          DF      N+    IA+ ++ L  LI  M  YGA  + + +I+PFFC Q+FD  L++LV  TV  Y   ++ Y+     +  +R  + +++ T   +++  F  ++L  K Y  + VW CY         R +   N + +L+Y    +T  LLP YDD         PPP Y+ 
Sbjct:  157 NSCCLCCHVRTGTILLGVWYLIINAVVLLILLSALADPDQYNFSSSELG--------GDFEFMDDANM---CIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFKGYLISCVWNCY---------RYINGRNSSDVLVYVTSNDTTVLLPPYDDATVNGAAKEPPPPYVS 369

The following BLAST results are available for this feature:

BLAST of TCONS_00018231 vs. Swiss-Prot (Human)

BLAST of TCONS_00018231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LAP4B	8.785e-20	30.04	Lysosomal-associated transmembrane protein 4B OS=H...	[more]

You are here

TCONS_00018231 (transcript) - C. hemisphaerica