TCONS_00018234 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018234
Unique NameTCONS_00018234
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length734

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018234 ID=TCONS_00018234|Name=TCONS_00018234|organism=Clytia hemisphaerica|type=transcript|length=734bp
GACGTCAGTAATCCATGCCCACACATGCTAAACATGATTTATCTTTTGTC
ATCCTAGTAGACTTAGATGTTGGAGGGGGCTCGTGAAAATATTTGTTAAT
CTTTCTTGattgtttttcaaataaatcAATACTACAGTAGACGCTCATTG
TCTCCGGGTTTCGAAGGAcaatttttctatatttccaattTAGGTATGGT
CCCTttagttattcaaaattcaTTCCAAATAACGTCTGAAACTGTATTCT
GAGTAAGTCTCAATATTTTCCCAGCTGATGTGATATAGTGATAATATTAT
TGAGTACATACTTTTTAGACTGGTTTTATCGGATTATATTTATATCCTAT
CGGACATCAGGAGATTGTGGTCCGTTTTAGGAATAGTTCCACTGCGGGAG
ATGGGAAATTTGGAGTTTTAAGTTTGAACATAAGTGGGATTAAgcgaaat
ttcgcgaaattttgcttttttggaaaaggAGTAAAAATATGACGGAGCTT
AATATCCTGAAACCATTTCGCtcattttagaatttaaaatgtTGATACCC
AAAACATTTCCTATGAAGAAAAAACCGTTTCCTATATTCATGGATAAAAG
CCAATATGGTTTACTGTATCCTAGAGACAGTTGCCAGTGGTGATAACAAC
TTCCTAGTTACTCTTGAAATATTGACGTCATGGGGTTAAAGTTTCGACAG
TTTATCCATAATAGGTTTAATTATTTGATAAATC
Run BLAST on NCBI

transcript from alignment at sc0000291:21105..21838

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018234 ID=TCONS_00018234|Name=TCONS_00018234|organism=Clytia hemisphaerica|type=transcript|length=734bp|location=Sequence derived from alignment at sc0000291:21105..21838 (Clytia hemisphaerica)
GATTTATCAAATAATTAAACCTATTATGGATAAACTGTCGAAACTTTAAC
CCCATGACGTCAATATTTCAAGAGTAACTAGGAAGTTGTTATCACCACTG
GCAACTGTCTCTAGGATACAGTAAACCATATTGGCTTTTATCCATGAATA
TAGGAAACGGTTTTTTCTTCATAGGAAATGTTTTGGGTATCAacatttta
aattctaaaatgaGCGAAATGGTTTCAGGATATTAAGCTCCGTCATATTT
TTACTccttttccaaaaaagcaaaatttcgcgaaatttcgcTTAATCCCA
CTTATGTTCAAACTTAAAACTCCAAATTTCCCATCTCCCGCAGTGGAACT
ATTCCTAAAACGGACCACAATCTCCTGATGTCCGATAGGATATAAATATA
ATCCGATAAAACCAGTCTAAAAAGTATGTACTCAATAATATTATCACTAT
ATCACATCAGCTGGGAAAATATTGAGACTTACTCAGAATACAGTTTCAGA
CGTTATTTGGAAtgaattttgaataactaaAGGGACCATACCTAaattgg
aaatatagaaaaattgTCCTTCGAAACCCGGAGACAATGAGCGTCTACTG
TAGTATTgatttatttgaaaaacaatCAAGAAAGATTAACAAATATTTTC
ACGAGCCCCCTCCAACATCTAAGTCTACTAGGATGACAAAAGATAAATCA
TGTTTAGCATGTGTGGGCATGGATTACTGACGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010245XLOC_010245Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018234-exon-sc0000291-1491911889:21105..21838TCONS_00018234-exon-sc0000291-1491911889:21105..21838Clytia hemisphaericaexon
TCONS_00018234-exon-sc0000291-1510915933:21105..21838TCONS_00018234-exon-sc0000291-1510915933:21105..21838Clytia hemisphaericaexon
TCONS_00018234-exon-sc0000291-1575043694:21105..21838TCONS_00018234-exon-sc0000291-1575043694:21105..21838Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000291supercontigsc0000291:21105..21838 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0748568	0.364524	0.216039	0.0868805	0.0813364	0.170837	0.211609	0	0.270034	0.808976	0.653434	0.268606	0.123538	0	0	0.215506	0.150341	0.196011	0.0956072	0	0	0	0	0.185322	0.197781	0.600039	1.14627
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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