TCONS_00018238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018238
Unique NameTCONS_00018238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018238 ID=TCONS_00018238|Name=TCONS_00018238|organism=Clytia hemisphaerica|type=transcript|length=564bp
TCTAAGGGTTAGGTTTTTCCATAgtgagtctctctaagggttataGGTTT
TTCTATAGTGAGTTTGTCTAAGGGTTAGGTTTTTCTATAGTGAGTCTGTC
TAAGGGTTAGGTTTTTCTATAgagagtctctctaagggttataGGTTTTT
CTATAGTGAGTTTGTCTAAGGGTTAGGTTTTTCTATAGTGAGTCTGTCTA
AGGGTTAGGTTTTTCTATAgtgagtctctctaagggttaggCTTTTCTAA
AgtgagtctctctaagggttataGGTTTTTCTATAGTGAGTTTGTCTAAG
GGCTAGGCTTTTCTATAGTGAGTCTCTCGAAGGGTTAGGTTTTTCTAGAG
TGAGTTTCTCGTTTTTTATGCCGTAGtgagtctctttaagggtcaccttt
tcagcaaaaatcagtctctctaagggtcatgGTTTGGAGGTCCGacacgc
acatacccagcatccttcaaccctagtacccccgggggCTCAAGTTAGCT
CAAAAGCCTATTATCTTCTCGAGGTTTTATATTGTATAAATTCCTGAACA
ACAGAACTcgaaag
Run BLAST on NCBI

transcript from alignment at sc0000291:107741..108304

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018238 ID=TCONS_00018238|Name=TCONS_00018238|organism=Clytia hemisphaerica|type=transcript|length=564bp|location=Sequence derived from alignment at sc0000291:107741..108304 (Clytia hemisphaerica)
ctttcgAGTTCTGTTGTTCAGGAATTTATACAATATAAAACCTCGAGAAG
ATAATAGGCTTTTGAGCTAACTTGAGcccccgggggtactagggttgaag
gatgctgggtatgtgcgtgtCGGACCTCCAAACcatgacccttagagaga
ctgatttttgctgaaaaggtgacccttaaagagactcaCTACGGCATAAA
AAACGAGAAACTCACTCTAGAAAAACCTAACCCTTCGAGAGACTCACTAT
AGAAAAGCCTAGCCCTTAGACAAACTCACTATAGAAAAACCtataaccct
tagagagactcacTTTAGAAAAGcctaacccttagagagactcacTATAG
AAAAACCTAACCCTTAGACAGACTCACTATAGAAAAACCTAACCCTTAGA
CAAACTCACTATAGAAAAACCtataacccttagagagactctcTATAGAA
AAACCTAACCCTTAGACAGACTCACTATAGAAAAACCTAACCCTTAGACA
AACTCACTATAGAAAAACCtataacccttagagagactcacTATGGAAAA
ACCTAACCCTTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010249XLOC_010249Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018238-exon-sc0000291-1491911889:107741..108304TCONS_00018238-exon-sc0000291-1491911889:107741..108304Clytia hemisphaericaexon
TCONS_00018238-exon-sc0000291-1510915933:107741..108304TCONS_00018238-exon-sc0000291-1510915933:107741..108304Clytia hemisphaericaexon
TCONS_00018238-exon-sc0000291-1575043694:107741..108304TCONS_00018238-exon-sc0000291-1575043694:107741..108304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000291supercontigsc0000291:107741..108304 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.131004	0.199093	0	0	0	0	0	0	0.0844989	0.126265	0	0.276466	0.858708	0.659764	0	0.0611055	0	0	0.276532	0.55093	0	0	0	0	0	0.0967458	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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