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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018245 ID=TCONS_00018245|Name=TCONS_00018245|organism=Clytia hemisphaerica|type=transcript|length=578bp
CTCTCCAGCGCTTCACAATGATCATCTCAGAACATATCGCAGAATGTGAG
AAAGAAGGAGTAAAGGTTGCTAATCTATGGTATCGATATACGCTGCAAAG
ATTACAAGAGATATTCCTTTTGtATCATAACGAAATCGATCAATACGCTG
ACAAGATTGAAAAGTTGATCTTCACTCCAGATATCGCTCCTCACATCTTA
GAAGTTTTCAAACGATACAAATCACTACGATCTTGaaagttgaagaaatt
ttcattttagcgTGTAGTTGCTGAGATCTTGTGTGATTTAACGGCTTAAA
AGCTGTCTAGGAAATGTAACTAGGAAATTGTATTCCAGGAAGATTCTATA
TGGTGctttaaaagaatttcaaataCAGGATCATAAGGAAACTGGAACAA
CACCCGCTCCATTTAGAAAGCTTTATCATGATAATAATTAGGTCAAATGG
AATTTCTAGGATTTCtcatgttgtttttattttttttattaacattatat
gaaacatttttagttttagcTATACtaagaaaactttttatttaacTTGA
TACATATCTTTCAGTCTACTTTTTTTGC Run BLAST on NCBI transcript from alignment at sc0000295:1239..2988+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018245 ID=TCONS_00018245|Name=TCONS_00018245|organism=Clytia hemisphaerica|type=transcript|length=1750bp|location=Sequence derived from alignment at sc0000295:1239..2988+ (Clytia hemisphaerica)
CTCTCCAGCGCTTCACAATGATCATCTCAGAACATATCGCAGAATGTGAG
AAAGAAGGAGTAAAGGTTGCTAATCTATGGTATCGATATACGCTGCAAAG
ATTACAAGAGATATTCCTTTTGGTATgaacatttttcttctttttttaat
tttttagttttagagttaatactaccttatcggggaaaaaatgtgacgaa
agtgacgaaaattttgagggggtgacgaaatttttcccccgatattttat
catccgaccaaaacttttacgtGATtcttttatccccgaccaaaactttt
acccgattttttaaaccccaactaacattaaaatctaatttttttacacc
tttattaaccgaaaatagtactttaaacgtcgaattacaagatctttttt
cgagctagtgaagaaatgtcggagttttatttagtcggggaaaaatttcg
tcacctagaggtattttcgtcactttcccccgaccaaaatttccaattcg
tcacttttccccgacgaaatttacaatttagtcacttccaCTCAActaaa
attgtccaaatgagatggacattttttccccgataaggtattcttAAAAG
TCGCTGAAGGGATGTCATATTAGTGTTGTGGGTGAATCAAGAAGCTGAAG
AACAATTagacgaacaaaggttaaattCGAGCATAATAATATCGATAGAG
AAAAGAGCTGGCCGGTgaattacacccctgtatcacggACCCGCTGGGAA
CCCAGCCCCACTGGATAATCGGGCAaagatttcgtccccggtaggaAATT
ACCCTGGAATCTAGCCCAGCTGCGAAATTGACTTATacttcatccccact
cgaaattaaatgtttaataattgcactccaaaaccatccccacttgattt
tttaacctttgaacgaccatagaatttctatccccattgggattttaata
ggaatttttatcgctactaaggaaaaaaaattccaccggggctgtgagac
aggggtgtctaatTGCTACATTGAAATAGAATAAAACAATGCATTTCTCG
AAACCTGCAAATTGTATGCAAACTGATGATTTGATATATCTCGTACGTAC
atttgggctcttccagaaaacaAAGCCTCTGTCCAGACAGAGGTATTCAA
AAATACATTCTGATCATAGCCTAAGAGGTGAATTTGCAAATGGGATGGAA
TATCGAAATATCCagggatattttttttttttaatatttgatttttattc
atttttcggACTGTTTCTCAACAATAcagtttcttcatttttagtATCAT
AACGAAATCGATCAATACGCTGACAAGATTGAAAAGTTGATCTTCACTCC
AGATATCGCTCCTCACATCTTAGAAGTTTTCAAACGATACAAATCACTAC
GATCTTGaaagttgaagaaattttcattttagcgTGTAGTTGCTGAGATC
TTGTGTGATTTAACGGCTTAAAAGCTGTCTAGGAAATGTAACTAGGAAAT
TGTATTCCAGGAAGATTCTATATGGTGctttaaaagaatttcaaataCAG
GATCATAAGGAAACTGGAACAACACCCGCTCCATTTAGAAAGCTTTATCA
TGATAATAATTAGGTCAAATGGAATTTCTAGGATTTCtcatgttgttttt
attttttttattaacattatatgaaacatttttagttttagcTATACtaa
gaaaactttttatttaacTTGATACATATCTTTCAGTCTACTTTTTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018245-exon-sc0000295-1491911889:1239..1360 | TCONS_00018245-exon-sc0000295-1491911889:1239..1360 | Clytia hemisphaerica | exon |
| TCONS_00018245-exon-sc0000295-1510915933:1239..1360 | TCONS_00018245-exon-sc0000295-1510915933:1239..1360 | Clytia hemisphaerica | exon |
| TCONS_00018245-exon-sc0000295-1575043694:1239..1360 | TCONS_00018245-exon-sc0000295-1575043694:1239..1360 | Clytia hemisphaerica | exon |
| TCONS_00018245-exon-sc0000295-1491911889:2533..2988 | TCONS_00018245-exon-sc0000295-1491911889:2533..2988 | Clytia hemisphaerica | exon |
| TCONS_00018245-exon-sc0000295-1510915933:2533..2988 | TCONS_00018245-exon-sc0000295-1510915933:2533..2988 | Clytia hemisphaerica | exon |
| TCONS_00018245-exon-sc0000295-1575043694:2533..2988 | TCONS_00018245-exon-sc0000295-1575043694:2533..2988 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000295 | supercontig | sc0000295:1239..2988 + |
Blast
The following BLAST results are available for this feature:
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