TCONS_00018252 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018252
Unique NameTCONS_00018252
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length933

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018252 ID=TCONS_00018252|Name=TCONS_00018252|organism=Clytia hemisphaerica|type=transcript|length=933bp
CTCGGACTCGGACACAGCTTGTTTTTCGCATTTTTACAATCCCTCCAAAC
ATCCAACAAGCAAATTCAACTCCAAGAAGTGGTTCTTCTCTTGTTTCTAT
CTTTGATCACCTTACCACacttttttttagcatttttatttcaaaatgag
taaagTGATCCGTAAAATTATCAACACCTCATCAGCTCCAAAGGCAATTG
GACCATacagCCAAGCAGTCCAAGTGAACCACATGCTCCATGTTTCTGGA
CAGCTAGGGTTAAATCCCGAGACAATGGATTTTGTGAGCAATGATGTCAG
TGAACAAACCAAACAGGCATTGACAAATGCTGGAGAAATTCTTAAAGCAG
CTGGCACATCATTTTCCAAAGTTGTGGAGACGACCATCTTATTGAGTGAT
ATCAATGATTACAAAGCTGTCAATGATGTTTATGCTACTTTTTTCACTGC
TCCTTTCCCAGCAAGAGCTGCTTTTGAATGTGCAAATTTACCAAAGCTTG
GTAAAGTCGAAATCAAAATGCTTGCAATAGTTGGTGAAATAGTTGAAGCA
TCTGCAAAATTATAGCcacaatttttcataaattgTTGGGAAAAGTGGAG
ATCAAGATGATGGCAATTATTGGAGATGTCGATGAACAATAGAATTGTAA
TCTCGTTCTCTCTCAAGCCCCTCTTCTAGACGCCTTTTTATGATTTCGGT
TAAgttattgttttttaatttttgattgattgattgattgattgaataat
tatttttacaatttttaaaacCATTATATTTGAATAGTTTTGTGAGTATT
GTAAAATTTagtgaatttcgaaaaagagacaaagacattaaaaatgaata
taaaaaggaaattttcttttgtcaatgcaattgaaaagatttaaaatctt
ttcttttcttgccttttgtaccaacatttttga
Run BLAST on NCBI

transcript from alignment at sc0000295:35153..40743+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018252 ID=TCONS_00018252|Name=TCONS_00018252|organism=Clytia hemisphaerica|type=transcript|length=5591bp|location=Sequence derived from alignment at sc0000295:35153..40743+ (Clytia hemisphaerica)
CTCGGACTCGGACACAGCTTGTTTTTCGCATTTTTACAATCCCTCCAAAC
ATCCAACAAGCAAATTCAACTCCAAGAAGTGGTTCTTCTCTTGTTTCTAT
CTTTGATCACCTTACCACacttttttttagcatttttatttcaaaatgag
taaagTGATCCGTAAAATTATCAACACCTCATCAGCTCCAAAGGCAATTG
GACCATacaggtttgtttttgtttttttagtttgatcaattaaaaaattt
tattgacacCATCACAACCCATGGTATGGCCCAAACGTACCCCAAACATT
TTGGGTCATGTTCAgacaaaaatagcaaaatactTTTACTTCAAAATGTT
GCGACTTCATTGCATCTTTTTAACTATgaaaaattacctaaattttGAGC
CATGATGATGGCATagatggaaaaaaattaaccaatcaaaccttgaaaac
taatttgaagaacaaTTTCCTAATAAAAAGATCTACAGGGAGACAACACC
CATCTAGATCCGTGCACCACTGGATAGACTATTCCCCAGAAATTTTTCCA
GAATCTACTTAAACACTGACCCTCCCTTTTGCATGCATGTGTGTGGAATC
ATGTTTACTTTAGCATGTAATCGAGGCCtaacaggaccctgccgacgcac
cggacttaacgaacaccggacacgcgaaagtccggtgtaaaatgagaatt
ttttttaccaccggacaatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatttg
aattttgtttataGCCAAGCAGTCCAAGTGAACCACATGCTCCATGTTTC
TGGACAGCTAGGGTTAAATCCCGAGGTAAGTTAGCCAACATGATTCCATG
TCATCCAAAGCTAATATTTATTGTTACTAAGCTGttatttgttgttttat
tttaagtaagtaagtctgcgaccgcagtcagaagcgacccgaaggctcct
ctttcgatagctatccacctgaaggtaggggagggtgccactccTTCTCc
ctgttttattttatttattgtttaataataaattttaattttataattAG
AAAATAAAGTCGCTTCTGTGTTaacaatttttgttgaaattattCAGGAG
GATGAACCAATTTGAAAGCTATCACTATTCTGCACTATTTAGTCTTggtt
cttttcttatttttgataaGATGATAAGTCTTAAATTGAATACAATCAAG
ATGTTTATGAAGTGGAAGtttaaattttaatgaaaaattcttATTGTGAA
TAATATTCTTATTGTATTCTGAATGTTAATCATATTCTGAATGTTAATCA
TATATTCATTTTCTGAAATGGTCTAGCCATCAATTCTATCTATCACAGAG
CTAGTTGTTACTGTCTTTTCCAGacaatttttgtatatttttccacCATT
TCTTTAGACAATGGATTTTGTGAGCAATGATGTCAGTGAACAAACCAAAC
AGGTAAAGTTACTTCTTGAAATTGTAAACTTTATTTGATTGGATCTTTTT
CATTCCTATAGTTAACCATCATTtttaaagttaaattttgatAATCTTTA
TTTCAAAAGTAATATTACATTTTTGCATtctatttttcttgtaaatagGC
ATTGACAAATGCTGGAGAAATTCTTAAAGCAGCTGGCACATCATTTTCCA
AAGGtatctttttataatttgatttctttgttATTGCTTGCTTATAAGAG
GCACAGCCAAATCCCTGAATTACTGGAAATGACAAAACTATTTCCAAAAC
AGCTTTAAGCTAGTTTTTTAAGTAAATTATTTGCTCatatcatagtataa
gaaagccgcggctatTTTTTGATCAAGAGATCATTaattaatgtagcatc
ttttatggtaaattttattggcttTTTGTTAATACTTACTTCTCAGTGTG
TTTTAGACATTAATGATATACCTttgataatacacttgcattataaaatc
attgtaaaggaaagatcaacaataagaaatttaaacaagcacaaaatggc
tgggctgaaagaactcaaaaataaaCAAGGTGCCTATCGAATGCCTTCGC
AATATCTCagtaaaatctttttagaaatcgatgaaaaagtacatctagat
aatactgtgaaagttTCCAGCCAGCAAAATTTATCATTCGAACTGAcaag
aaagttgtcatcttgaatatagttcttataatttagattttggcgaaaaa
ctattttttcaacaaaataccCCTGAAATATGtccaaattagttcaagtg
ttctattgggtacagatataaagatatctagcaataaaaaactttttgtg
aaggaaaataagagaacaaATTcgaaaactatctaccaataataaattga
gcatcttgatgttcttataaagctctgagacagagatagaacagcaatta
actgagaagacaacgtggtacatattccagccgcggctttcttatactat
gctcaTATATTTTCATGTAAATGTTCATCACTACTCGAATGTTTTTTCTT
ATCTAGTTGTGGAGACGACCATCTTATTGAGTGATATCAATGATTACAAA
GCTGTCAATGATGTTTATGCTACTTGTATGTTTATTTGGCTAATATTCCC
AATCTCCCCTATTGTGCTTTTCTACTGCATTTTCTGACGCTTACCTTAGA
GGAAGTAtaaaaccataccatttttaaaataattgaaaaatcatGCGATT
GATTACTTACGGAAGCATATTAAAAGTTAATAGTTTTCCTTTTTAAAACA
tcttgctatttttgataattccaATCTCGTGATTGTGAATATAATAACAG
TTGAATGAATATTTGCTACCTCGTATTTTCTTTCTAGTTTTCACTGCTCC
TTTCCCAGCAAGAGCTGCTTTTGAATGTGCAAATTTACCAAAGGTGAGAA
ACTATTTTTGTTGGGAATTTTTCTTACCTTGGCAAATTTCCTTCAAAGAT
AAATACGATTTCTTTACCAAATAATAATCTTATCCAATAAACCTATAGCT
GAGCAATATGACTACCCAAACACAATCTTATCATCAAGATTCATCTTTTT
TTCAATCCCTCTGTCATTCATCACATTATTTCATAGCTTGGTAAAGTCGA
AATCAAAATGCTTGCAATAGTTGGTGAAATAGTTGAAGCATCTGCAAAAT
TATAGCcacaatttttcataaattggTATGTtagcaaaaaatcacaaaat
aacaAACTAATATATAATTGTTTTACAGTTTCGCAATTAAGAATTCTATT
AATTTTAACCAGTTACTGGCACATTTTCAAAGTAAAATTGTTGATGAAAC
AAATACAATAACAAAACAAATAACAATGGATGCCAAGCTAATAAACCAAC
TAATAAAGTTAATATTCAAAACCCATTATTTCCAACATTATTTATTCTCA
CTGGAATTATTATCAAAATGTTTCTGATGATTGGAATTACTTGTACTTAA
CATATTGGGAAAGGAAAATCACAATCTCccttttttagatttctatTAAC
AAATACCAGGCATTTGTTTAACTGAGAgtcactttttgaaattttgaaat
tttattgagttTGAGAAAACTTGCTGAATTTTCTACTTTGAATATATCCA
AAGACATTGTTAGGTACAACATGGTCAATATTGTAAAAAGGAGAATTTCC
cgccaatttttttaaatccatAAATGACTTTTTAAGTGTTCTAACTTCTT
GAACGTAAGGTTTTAAGACTGAGTTTtgacattagacttaagacttaaga
cgGATCTTAGGATCTCagaatccaaaagttcaaagatgttccaataaggc
tgggAATATACAGCTTGGAAGCCACTAAACCccgtcaaaattaaaatatc
gAATAAATGTCCTTTTTTACTAactagtttttcaaaatattggctGGGAG
CCCTGATATTTAAGTCTTAAATTAAATTTCTTTATACTTACAGTTGGGAA
AAGTGGAGATCAAGATGATGGCAATTATTGGAGATGTCGATGAACAATAG
AATTGTAATCTCGTTCTCTCTCAAGCCCCTCTTCTAGACGCCTTTTTATG
ATTTCGGTTAAgttattgttttttaatttttgattgattgattgattgat
tgaataattatttttacaatttttaaaacCATTATATTTGAATAGTTTTG
TGAGTATTGTAAAATTTagtgaatttcgaaaaagagacaaagacattaaa
aatgaatataaaaaggaaattttcttttgtcaatgcaattgaaaagattt
aaaatcttttcttttcttgccttttgtaccaacatttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010259XLOC_010259Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018252-exon-sc0000295-1491911889:35153..35362TCONS_00018252-exon-sc0000295-1491911889:35153..35362Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1510915933:35153..35362TCONS_00018252-exon-sc0000295-1510915933:35153..35362Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1575043694:35153..35362TCONS_00018252-exon-sc0000295-1575043694:35153..35362Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1491911889:37217..37277TCONS_00018252-exon-sc0000295-1491911889:37217..37277Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1510915933:37217..37277TCONS_00018252-exon-sc0000295-1510915933:37217..37277Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1575043694:37217..37277TCONS_00018252-exon-sc0000295-1575043694:37217..37277Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1491911889:37860..37904TCONS_00018252-exon-sc0000295-1491911889:37860..37904Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1510915933:37860..37904TCONS_00018252-exon-sc0000295-1510915933:37860..37904Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1575043694:37860..37904TCONS_00018252-exon-sc0000295-1575043694:37860..37904Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1491911889:38051..38105TCONS_00018252-exon-sc0000295-1491911889:38051..38105Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1510915933:38051..38105TCONS_00018252-exon-sc0000295-1510915933:38051..38105Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1575043694:38051..38105TCONS_00018252-exon-sc0000295-1575043694:38051..38105Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1491911889:38959..39027TCONS_00018252-exon-sc0000295-1491911889:38959..39027Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1510915933:38959..39027TCONS_00018252-exon-sc0000295-1510915933:38959..39027Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1575043694:38959..39027TCONS_00018252-exon-sc0000295-1575043694:38959..39027Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1491911889:39290..39345TCONS_00018252-exon-sc0000295-1491911889:39290..39345Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1510915933:39290..39345TCONS_00018252-exon-sc0000295-1510915933:39290..39345Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1575043694:39290..39345TCONS_00018252-exon-sc0000295-1575043694:39290..39345Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1491911889:39539..39627TCONS_00018252-exon-sc0000295-1491911889:39539..39627Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1510915933:39539..39627TCONS_00018252-exon-sc0000295-1510915933:39539..39627Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1575043694:39539..39627TCONS_00018252-exon-sc0000295-1575043694:39539..39627Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1491911889:40396..40743TCONS_00018252-exon-sc0000295-1491911889:40396..40743Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1510915933:40396..40743TCONS_00018252-exon-sc0000295-1510915933:40396..40743Clytia hemisphaericaexon
TCONS_00018252-exon-sc0000295-1575043694:40396..40743TCONS_00018252-exon-sc0000295-1575043694:40396..40743Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295supercontigsc0000295:35153..40743 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
194.749	205.553	87.7195	81.2967	5.61836	2.56905	14.6751	17.4974	43.1433	38.894	34.2529	34.9979	46.7657	45.2795	75.2602	90.9669	81.7729	88.5511	29.2697	28.5933	59.3286	56.5521	123.245	109.417	71.1732	59.7895	144.102	117.923	111.984	96.7127
Blast
[Close]
BLAST of TCONS_00018252 vs. Swiss-Prot (Human)
Match: RIDA (2-iminobutanoate/2-iminopropanoate deaminase OS=Homo sapiens GN=RIDA PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.962e-39
Identity = 72/136 (52.94%), Postives = 103/136 (75.74%), Query Frame = 2 
Query:  146 MSKVIRKIINTSSAPKAIGPYSQAVQVNHMLHVSGQLGLNPETMDFVSNDVSEQTKQALTNAGEILKAAGTSFSKVVETTILLSDINDYKAVNDVYXXXXXXXXXXXXXXECANLPKLGKVEIKMLAIVGEIVEAS 553
            MS +IR++I+T+ AP AIGPYSQAV V+  +++SGQ+G++P +   VS  V+E+ KQAL N GEILKAAG  F+ VV+TT+LL+DIND+  VN++Y  +F + FPARAA++ A LPK  ++EI+ +AI G +  AS
Sbjct:    1 MSSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTAS 136
The following BLAST results are available for this feature:
BLAST of TCONS_00018252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RIDA6.962e-3952.942-iminobutanoate/2-iminopropanoate deaminase OS=Ho... [more]
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