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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018259 ID=TCONS_00018259|Name=TCONS_00018259|organism=Clytia hemisphaerica|type=transcript|length=3188bp
ataacgaaaatgcCCTTTCCTGTGGAAACTGTATCTGGAAAATAACATGA
AACTTCAAAGCACTGTAAAAGCAATCATTTTATAAAATCTTTTAATCGTT
ttatgtttttgtcatttttagggataAGAAAAGACATTCTTTAATTGAAT
AAGTGAATTAGGTGTATCTGTTCGGATATAGTTACAACTGAGAGAAATTC
CTTGAGGAATCAGAAGATGCTTCTAAGGAAAGCAAGCAGAGAAAAGATGA
AGAAACTGCTGATCCTAGTTTTTATTGCTGGTTTCTTTTATTTGTTCCTC
AAAATCTCGAATATTACTCAAAAACAATCACAAAAGTCTCCACCAGCCTT
CCAATCAAGTTACATCATTTTGAGGCAAGGAAGTTCATTGCCGCTATTTG
GTGCTATACAAAGCCAAAGGCGTCTAATTGGTGTGTCTGAAATTCTGTAT
AACCCTGAAATTGAACTTGAAGCACGCGATTACATTCCTGTCAAAGTGCC
AACAATCAGTGCACCAGAACAAGAAACAAACTCTTTAAACCTCTACTCAT
GGACAGAGATATGTAATAAGAATATAGATAGTTTGATCTATCATCCATTG
TTCCCTCATCTACCTGAATATAAAAAATCAACAGTCAAGTTAGACCTGAA
TATAGGCAAGAACACAGGTGTCTATTTATTTGGTAAATTGAAGCCAGGGA
TGGCTGGTGTATATAGATTCCATGCATTATCTACCAAAATTGCATTCCAA
GTATGGCTATCAAGTGATGAGAACCCGTCCAATTCCAAACTGATATTACA
CGAGAATCTTGTCCGGTCAAAAGACTTAGAACTTTTCAATTCACCTTATC
ATATCAGTATTGTTCTAAAAACGGGCACCTCCCCTGgtaaattttcattg
aaatggtTAACACCAGGCAAGAAAGAATACACTTTGATCCCATCAAATAA
TCTAGAATCTTATCCACCGGACAGTCCAATGGTGCGTGAAGAGAACCTTC
AAAAGATGATGATTTTGGATAAGAAAATACCTTTGCGTGATATGTACGAT
TCTgaccaaaacaaaagaagagctTTGATGTTCAAACTACCGTTCATCCC
TGAAGAAGACATTGAAGGTTTGTTCCCAAAATGCAATTATGATCCTTCCT
ACTTGATCAAGAAGAAGATTACTAAACAATATGCAGGACAGTGGGAGACA
CATTTCACGTCAGTTTATCCTCCTGATGAGACAGATATGGTTATTTACCA
CCCAGGAATGAAAGACCCACACATCATCTATGGTAATCCTTTACTGAAAC
GTGATGTGGCTGATTTCATTGTTGAAAAAGTGGTCAATGCCATCAAAGAG
AAACATAAAGATAAATATCAATTGAAAGAAATCCTCTCAGTCGAACAGAA
CGAAGATGACGTCAAAGGTGATCGTTACTTAGTGGAACTGGAACTTTTGA
ACGACCAAGATGAAAAAACATATCGATTCGCCGAATATTTATATCATCCA
AAAGGCAGCAACCAGCTATGTTACCCTGAGAATTTCAAATGGAATAAAAC
AGCTGAAGTGAACCTCATTATTACTTCAGCTGGTCAGAGTCGTTGGTTAA
TTCACTTCATAAACACTGTCAATCAGATTTATAAAGAGACCAATGATGAG
AACATTGCAATTACTATTGTGGATTTTGACAACAAGGACACTGGTGTAAT
GAAAGCATTGAAAGAATCACCATTGAAAAAATACACTTATATCAGGAGAA
AGGGCAAATTTCATAAAACACTAGCGCTGAATGATGCAGCAGCTTCCATC
ACCAATCCTGATGCTATTGTCATGCAAGTTGATCTTCATTTGGTCATACC
AGCTGACTTCATCGACAATGTTCGGAAGCATACTATCCAAGGCAGAATGG
CTTGTAGTCCATTGTTGAATCGTTTGCAATGTGGCGCAACACCTCAACAT
CCAACTGGCTATTGGGAAGATGAAGGCTATGGTATCTTTGGTATCTACAA
ATCAGACTGGAATTACGTGGGTGGTATGAACGCCAAAGGCTTTCAAGACA
AATGGGGTGGAGAGGATTGGGAACTGTTAGATTCTGTATTGAGTCATGGA
TTTGAATGTGAAagactaaaaattaaaaatttccatcacGTTTTTCATTC
CAAAAAGAACATGTGGAATAATTTATTGTTCACGTGATATCTGGTTTTGG
TGCAATTTGATATTCTCATCTAATGCCTTGCTGCATCTGGTTGGATTGTT
AATCTGTAATAAATAGAGTTCAATCTATAAAATGTTGATGTTGATAGTTC
TGTTGAAGCTAAATAATTCAGTATTGCTCCGAATCTTTTTTCTACACAGT
ACTTTaactcaagaaaaaaaattcaacaaatgTACAAGAGATTATTCAAG
GATAAAATTTTGCGGTAAAAAAATTGTGCTGGATTTTGTGGATTTTAGTT
TCATCTGTGAAATAAAGTCCAATAGAAATTTGTAAAGGTCATGCTCGAAT
TATCTTTTGAATAGACCGAATATAGCATCAGAATCTTATGCTATCTCTAG
AGTTGATTAGTGGTTGAGAAAGGTCGGTCCATATGGAAATGCCCATTCTA
AGTTCAGTCTTTTTAACATTCATAAAGATTTTTACTCCATGTTtaataaa
aggataaaaaaaataatatattagaaatttaaaagttagattattttcaa
attaccTCTAGAAAATACAGCTGTTGAAGTTCAGGAAATTGGTTGATTAA
TTATATTCTTGATAATATCTACGTTTTTGTTCTAATTGTTAGCTCAAACA
GCGGAGTTTGTAAACAATCAATGCTTACTTTTTTGCAATGACAAAGTGCT
CAATTCTCAAAATGAGGTGGGAATCTTAAAACACAGTGCTAAGCATTCAG
GTATGGTAAACttttgaaagttatttttattaatatttaaatcagaaaaa
tgtacaaaaaaatatttccaatttaTTTCAGAGGACTTATTGTTAATAAG
ATTTAttgtcaacatgaaaaatatgagcaatctgattggctaaaaacgtg
tacataaatactgtatttcatattgtaccgtacaaatacgagaccgcgtt
caaaaaggggtctggtaagcgagagatcatattttgtacaattttatcct
caaaaatattatcttttttctctcACTTCactcaaaag Run BLAST on NCBI transcript from alignment at sc0000295:165660..171765+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018259 ID=TCONS_00018259|Name=TCONS_00018259|organism=Clytia hemisphaerica|type=transcript|length=6106bp|location=Sequence derived from alignment at sc0000295:165660..171765+ (Clytia hemisphaerica)
ataacgaaaatgcCCTTTCCTGTGGAAACTGTATCTGGAAAATAACATGA
AACTTCAAAGCACTGTAAAAGCAATCATTTTATAAAATCTTTTAATCGTT
ttatgtttttgtcatttttagggataAGAAAAGACATTCTTTAATTGAAT
AAGTGAATTAGGTGTATCTGTTCGGATATAGTTACAACTGAGAGAAATTC
CTTGAGGAATCAGAAGATGCTTCTAAGGAAAGGTTAGTTTCATTTTATCT
TTGCCTTCAAGGTAAGATGTTGATTTAATGGCAATTTGTAATATTTTGCT
GATGATCTAgcatttctcaatattttgaaagtttcaataGAATTAGTTTA
GAAATCTtaccttttttgttttatatgCCCTTAAATTTCATTATCCAATT
CctcaatatttcaattttctttgcCATAGCAAGCAGAGAAAAGATGAAGA
AACTGCTGATCCTAGTTTTTATTGCTGGTTTCTTTTATTTGTTCCTCAAA
ATCTCGAATATTACTCAAAAACAATCACAAAAGTCTCCACCAGCCTTCCA
ATCAAGTTACATCATTTTGAGGCAAGGAAGTTCATTGCCGCTATTTGGTG
CTATACAAAGCCAAAGGCGTCTAATTGGTGTGTCTGAAATTCTGTATAAC
CCTGAAATTGAACTTGAAGCACGCGATTACATTCCTGTCAAAGTGCCAAC
AATCAGTGCACCAGAACAAGAAACAAACTCTTTAAACCTCTACTCATGGA
CAGAGATATGTAATAAGAATATAGATAGTTTGATCTATCATCCATTGTTC
CCTCATCTACCTGAATATAAAAAATCAACAGTCAAGTTAGACCTGAATAT
AGGCAAGAACACAGGTGTCTATTTATTTGGTAAATTGAAGCCAGGGATGG
CTGGTGTATATAGATTCCATGCATTATCTACCAAAATTGCATTCCAAGTA
TGGCTATCAAGTGATGAGAACCCGTCCAATTCCAAACTGATATTACACGA
GAATCTTGTCCGGTCAAAAGACTTAGAACTTTTCAATTCACCTTATCATA
TCAGTATTGTTCTAAAAACGGGCACCTCCCCTGgtaaattttcattgaaa
tggtTAACACCAGGCAAGAAAGAATACACTTTGATCCCATCAAATAATCT
AGAATCTTATCCACCGGACAGTCCAATGGTGCGTGAAGAGAACCTTCAAA
AGATGATGATTTTGGATAAGAAAATACCTTTGCGTGATATGTACGATTCT
gaccaaaacaaaagaagagctTTGATGTTCAAACTACCGTTCATCCCTGA
AGAAGACATTGAAGGTTTGTTCCCAAAATGCAATTATGATCCTTCCTACT
TGATCAAGAAGAAGATTACTAAACAATATGCAGGACAGTGGGAGACACAT
TTCACGTCAGTTTATCCTCCTGATGAGACAGATATGGTTATTTACCACCC
AGGAATGAAAGACCCACACATCATCTATGGTAATCCTTTACTGAAACGTG
ATGTGGCTGATTTCATTGTTGAAAAAGTGGTCAATGCCATCAAAGAGAAA
CATAAAGAGTAAGTTTATTTTTATATACTACCCTTGAATGGAAGTACTTA
AAAGTTCACCCACCTTGATGAACACTTTCGGTTCTTTTAACAACTTCATC
CAACTGTTTGCTCAAATCAAGCTTCAAGACCTCAGTGAATGGTGACCATT
TACCTTAactggattaaatttcgcgtggattgatttttaaaatgttgtcc
atgcaaaaattttggattttcaattCGCGAAGCTGcgcgaagaaaaaaaa
tccactTTATTCTTTTTAGTCATTCCTTGTGACGATGTGAAGCTCTGACG
TTTTGTATATCGAGAATAACTCTTCAATGTTCGAGTTATTTCAAATGAAT
GATAAAATGCTCCTATGAACTGATTGCCTTGAAAACTGGCTGAGTCCGAA
ATATTCCggaaaaatcaaataataataGCCGCATTCCTTATTCCGCATTA
TTAGCGTTCGAAATAATATCATTCTATACAcatattttttgtcattcttc
CATAGTAAATATCAATTGAAAGAAATCCTCTCAGTCGAACAGAACGAAGA
TGACGTCAAAGGTGATCGTTACTTAGTGGAACTGGAACTTTTGAACGACC
AAGATGAAAAAACATATCGATTCGCCGAATATTTATATCATCCAAAAGGC
AGCAACCAGCTATGTTACCCTGAGAATTTCAAATGGAATAAAACAGCTGA
AGTGAACCTCATTATTACTTCAGCTGGTCAGAGTCGTTGGTTAATTCACT
TCATAAACACTGTCAATCAGATTTATAAAGAGACCAATGATGAGAACATT
GCAATTACTATTGTGGATTTTGACAACAAGGACACTGGTGTAATGAAAGC
ATTGAAAGAATCACCATTGAAAAAATACACTTATATCAGGAGAAAGGGCA
AATTTCATAAAACACTAGCGCTGAATGATGCAGCAGCTTCCATCACCAAT
CCTGATGCTATTGTCATGCAAGTTGATCTTCATTTGGTCATACCAGCTGA
CTTCATCGACAATGTTCGGAAGGTAATTGCACTATTTATCATATCAAGCT
CTTTGCTCTTCCAGCAATTTATGTACACACCGTTGTGTGCCCTAGTCATT
ATTTTCTAGCTTTGGAAGAAGAACTCCACTTCTGCTAAGTTTGTTTCTTG
TCACACTACAATGATTTAAAGCTTTGTTATGCTGTCGCAAGTTATGTTAG
AGCGAATGGCGATATTTGAGATTTTCGTAATCAAATGGGCTTTTTTTTTC
ATGCCAGTTTAGTGACAGGTATGTGTActaattttactttttgttttata
atttgTTTAGCATACTATCCAAGGCAGAATGGCTTGTAGTCCATTGTTGA
ATCGTTTGCAATGTGGCGCAACACCTCAACATCCAACTGGCTATTGGGAA
GATGAAGGCTATGGTATCTTTGGTATCTACAAATCAGACTGGAATTACGT
GGGTGGTATGAACGCCAAAGGCTTTCAAGACAAATGGGGTGGAGAGGATT
GGGAACTGTTAGATTCTGTATTGAGTCATGGATTTGAATGTGAAagacta
aaaattaaaaatttccatcacGTTTTTCATTCCAAAAAGAACATGTGGAA
TAATTTATTGTTCACGTGATATCTGGTTTTGGTGCAATTTGATATTCTCA
TCTAATGCCTTGCTGCATCTGGTTGGATTGTTAATCTGTAATAAATAGAG
TTCAATCTATAAAATGTTGATGTTGATAGTTCTGTTGAAGCTAAATAATT
CAGTATTGCTCCGAATCTTTTTTCTACACAGTACTTTaactcaagaaaaa
aaattcaacaaatgTACAAGAGATTATTCAAGGATAAAATTTTGCGGTAA
AAAAATTGTGCTGGATTTTGTGGATTTTAGTTTCATCTGTGAAATAAAGT
CCAATAGAAATTTGTAAAGGTCATGCTCGAATTATCTTTTGAATAGACCG
AATATAGCATCAGAATCTTATGCTATCTCTAGAGTTGATTAGTGGTTGAG
AAAGGTCGGTCCATATGGAAATGCCCATTCTAAGTTCAGTCTTTTTAACA
TTCATAAAGATTTTTACTCCATGTTtaataaaaggataaaaaaaataata
tattagaaatttaaaagttagattattttcaaattaccTCTAGAAAATAC
AGCTGTTGAAGTTCAGGAAATTGGTTGATTAATTATATTCTTGATAATAT
CTACGTTTTTGTTCTAATTGTTAGCTCAAACAGCGGAGTTTGTAAACAAT
CAATGCTTACTNAATGTTGATGTTGATAGTTCTGTTGAAGCTAAATAATT
CAGTATTGCTCCGAATCTTTTTTCTACACAGTACTTTaactcaagaaaaa
aaattcaacaaatgTACAAGAGATTATTCAAGGATAAAATTTTGCGGTAA
AAAAATTGTGCTGGATTTTGTGGATTTTAGTTTCATCTGTGAAATAAAGT
CCAATAGAAATTTGTAAAGGTCATGCTCGAATTATCTTTTGAATAGACCG
AATATAGCATCAGAATCTTATGCTATCTCTAGAGTTGATTAGTGGTTGAG
AAAGGTCGGTCCATATGGAAATGCCCATTCTAAGTTCAGTCTTTTTAACA
TTCATAAAGATTTTTACTCCATGTTtaataaaaggataaaaaaaataata
tattagaaatttaaaagttagattattttcaaattaccTCTAGAAAATAC
AGCTGTTGAAGTTCAGGAAATTGGTTGATTAATTATATTCTTGATAATAT
CTACGTTTTTGTTCTAATTGTTAGCTCAAACAGCGGAGTTTGTAAACAAT
CAATGCTTACTTTTTTGCAATGACAAAGTGCTCAATTCTCAAAATGAGGT
GGGAATCTTAAAACACAGTGCTAAGCATTCAGGTATGGTAAACttttgaa
agttatttttattaatatttaaatcagaaaaatgtacaaaaaaatatttc
caatttaTTTCAGAGGACTTATTGTTAATAAGATTTAttgtcaacatgaa
aaatatgagcaatctgattagctaaaaacgcgtacataaatgctgGGTAC
AGAACAGTGTTCAAGAGTGGTTCAAATCTATNCTTGTCACACTACAATGA
TTTAAAGCTTTGTTATGCTGTCGCAAGTTATGTTAGAGCGAATGGCGATA
TTTGAGATTTTCGTAATCAAATGGGCTTTTTTTTTCATGCCAGTTTAGTG
ACAGGTATGTGTActaattttactttttgttttataatttgTTTAGCATA
CTATCCAAGGCAGAATGGCTTGTAGTCCATTGTTGAATCGTTTGCAATGT
GGCGCAACACCTCAACATCCAACTGGCTATTGGGAAGATGAAGGCTATGG
TATCTTTGGTATCTACAAATCAGACTGGAATTACGTGGGTGGTATGAACG
CCAAAGGCTTTCAAGACAAATGGGGTGGAGAGGATTGGGAACTGTTAGAT
TCTGTATTGAGTCATGGATTTGAATGTGAAagactaaaaattaaaaattt
ccatcacGTTTTTCATTCCAAAAAGAACATGTGGAATAATTTATTGTTCA
CGTGATATCTGGTTTTGGTGCAATTTGATATTCTCATCTAATGCCTTGCT
GCATCTGGTTGGATTGTTAATCTGTAATAAATAGAGTTCAATCTATAAAA
TGTTGATGTTGATAGTTCTGTTGAAGCTAAATAATTCAGTATTGCTCCGA
ATCTTTTTTCTACACAGTACTTTaactcaagaaaaaaaattcaacaaatg
TACAAGAGATTATTCAAGGATAAAATTTTGCGGTAAAAAAATTGTGCTGG
ATTTTGTGGATTTTAGTTTCATCTGTGAAATAAAGTCCAATAGAAATTTG
TAAAGGTCATGCTCGAATTATCTTTTGAATAGACCGAATATAGCATCAGA
ATCTTATGCTATCTCTAGAGTTGATTAGTGGTTGAGAAAGGTCGGTCCAT
ATGGAAATGCCCATTCTAAGTTCAGTCTTTTTAACATTCATAAAGATTTT
TACTCCATGTTtaataaaaggataaaaaaaataatatattagaaatttaa
aagttagattattttcaaattaccTCTAGAAAATACAGCTGTTGAAGTTC
AGGAAATTGGTTGATTAATTATATTCTTGATAATATCTACGTTTTTGTTC
TAATTGTTAGCTCAAACAGCGGAGTTTGTAAACAATCAATGCTTACTTTT
TTGCAATGACAAAGTGCTCAATTCTCAAAATGAGGTGGGAATCTTAAAAC
ACAGTGCTAAGCATTCAGGTATGGTAAACttttgaaagttatttttatta
atatttaaatcagaaaaatgtacaaaaaaatatttccaatttaTTTCAGA
GGACTTATTGTTAATAAGATTTAttgtcaacatgaaaaatatgagcaatc
tgattggctaaaaacgtgtacataaatactgtatttcatattgtaccgta
caaatacgagaccgcgttcaaaaaggggtctggtaagcgagagatcatat
tttgtacaattttatcctcaaaaatattatcttttttctctcACTTCact
caaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018259-exon-sc0000295-1491911889:165660..165891 | TCONS_00018259-exon-sc0000295-1491911889:165660..165891 | Clytia hemisphaerica | exon |
| TCONS_00018259-exon-sc0000295-1510915933:165660..165891 | TCONS_00018259-exon-sc0000295-1510915933:165660..165891 | Clytia hemisphaerica | exon |
| TCONS_00018259-exon-sc0000295-1575043694:165660..165891 | TCONS_00018259-exon-sc0000295-1575043694:165660..165891 | Clytia hemisphaerica | exon |
| TCONS_00018259-exon-sc0000295-1491911889:166089..167217 | TCONS_00018259-exon-sc0000295-1491911889:166089..167217 | Clytia hemisphaerica | exon |
| TCONS_00018259-exon-sc0000295-1510915933:166089..167217 | TCONS_00018259-exon-sc0000295-1510915933:166089..167217 | Clytia hemisphaerica | exon |
| TCONS_00018259-exon-sc0000295-1575043694:166089..167217 | TCONS_00018259-exon-sc0000295-1575043694:166089..167217 | Clytia hemisphaerica | exon |
| TCONS_00018259-exon-sc0000295-1491911889:167715..168231 | TCONS_00018259-exon-sc0000295-1491911889:167715..168231 | Clytia hemisphaerica | exon |
| TCONS_00018259-exon-sc0000295-1510915933:167715..168231 | TCONS_00018259-exon-sc0000295-1510915933:167715..168231 | Clytia hemisphaerica | exon |
| TCONS_00018259-exon-sc0000295-1575043694:167715..168231 | TCONS_00018259-exon-sc0000295-1575043694:167715..168231 | Clytia hemisphaerica | exon |
| TCONS_00018259-exon-sc0000295-1491911889:170456..171765 | TCONS_00018259-exon-sc0000295-1491911889:170456..171765 | Clytia hemisphaerica | exon |
| TCONS_00018259-exon-sc0000295-1510915933:170456..171765 | TCONS_00018259-exon-sc0000295-1510915933:170456..171765 | Clytia hemisphaerica | exon |
| TCONS_00018259-exon-sc0000295-1575043694:170456..171765 | TCONS_00018259-exon-sc0000295-1575043694:170456..171765 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000295 | supercontig | sc0000295:165660..171765 + |
Blast
BLAST of TCONS_00018259 vs. Swiss-Prot (Human)
Match: B4GN4 (N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B4GALNT4 PE=1 SV=1) HSP 1 Score: 258.84 bits (660), Expect = 9.997e-72 Identity = 114/322 (35.40%), Postives = 187/322 (58.07%), Query Frame = 1
Query: 1276 IYGNPLLKRDVADFIVEKVVNAIKEKHKDKYQLKEILSVEQNEDDVKGDRYLVELELLNDQDEKTYRFAEYLY------------------------HPKGSNQLCYPENFKWNKTAEVNLIITSAGQSRWLIHFINTVNQIYKETNDENIAITIVDFDNKDTGVMKALKESPLKKYTYIRRKGKFHKTLALNDAAASITNPDAIVMQVDLHLVIPADFIDNVRKHTIQGRMACSPLLNRLQCGATPQHPTGYWEDEGYGIFGIYKSDWNYVGGMNAKGFQDKWGGEDWELLDSVLSHGFECERLKIKNFHHVFHSKKNMWN 2169
+ GN L A + + + + +H ++ L I++VE+ D +G R+L+ELEL ++ R +EY++ P G +LC P W + V+ I+ Q+RW+ F+ + ++ T D ++ +VDF+++D V +AL+ + L +Y Y+RR G F ++ L ++ + +IV DLH+ P + +D +RKH ++GR+A +P++ RL CG++P+ P GYWE G+G+FGIYKSD++ VGGMN + F+D+WGGEDWELLD VL G E ERL+++NF+H +HSK+ MW+
Sbjct: 707 VSGNLQLPEAEAVDVTAQYMERLNARHGGRFALLRIVNVEKRRDSARGSRFLLELEL-QERGGGRLRLSEYVFLRLPGARVGDADGESPEPAPAASVRPDGRPELCRPLRLAWRQDVMVHFIVPVKNQARWVAQFLADMAALHARTGDSRFSVVLVDFESEDMDVERALRAARLPRYQYLRRTGNFERSAGLQAGVDAVEDASSIVFLCDLHIHFPPNILDGIRKHCVEGRLAFAPVVMRLSCGSSPRDPHGYWEVNGFGLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLDRVLQAGLEVERLRLRNFYHHYHSKRGMWS 1027
The following BLAST results are available for this feature:
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