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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018260 ID=TCONS_00018260|Name=TCONS_00018260|organism=Clytia hemisphaerica|type=transcript|length=2538bp
tagggataAGAAAAGACATTCTTTAATTGAATAAGTGAATTAGGTGTATC
TGTTCGGATATAGTTACAACTGAGAGAAATTCCTTGAGGAATCAGAAGAT
GCTTCTAAGGAAAGCAGAGAAAAGATGAAGAAACTGCTGATCCTAGTTTT
TATTGCTGGTTTCTTTTATTTGTTCCTCAAAATCTCGAATATTACTCAAA
AACAATCACAAAAGTCTCCACCAGCCTTCCAATCAAGTTACATCATTTTG
AGGCAAGGAAGTTCATTGCCGCTATTTGGTGCTATACAAAGCCAAAGGCG
TCTAATTGGTGTGTCTGAAATTCTGTATAACCCTGAAATTGAACTTGAAG
CACGCGATTACATTCCTGTCAAAGTGCCAACAATCAGTGCACCAGAACAA
GAAACAAACTCTTTAAACCTCTACTCATGGACAGAGATATGTAATAAGAA
TATAGATAGTTTGATCTATCATCCATTGTTCCCTCATCTACCTGAATATA
AAAAATCAACAGTCAAGTTAGACCTGAATATAGGCAAGAACACAGGTGTC
TATTTATTTGGTAAATTGAAGCCAGGGATGGCTGGTGTATATAGATTCCA
TGCATTATCTACCAAAATTGCATTCCAAGTATGGCTATCAAGTGATGAGA
ACCCGTCCAATTCCAAACTGATATTACACGAGAATCTTGTCCGGTCAAAA
GACTTAGAACTTTTCAATTCACCTTATCATATCAGTATTGTTCTAAAAAC
GGGCACCTCCCCTGgtaaattttcattgaaatggtTAACACCAGGCAAGA
AAGAATACACTTTGATCCCATCAAATAATCTAGAATCTTATCCACCGGAC
AGTCCAATGGTGCGTGAAGAGAACCTTCAAAAGATGATGATTTTGGATAA
GAAAATACCTTTGCGTGATATGTACGATTCTgaccaaaacaaaagaagag
ctTTGATGTTCAAACTACCGTTCATCCCTGAAGAAGACATTGAAGGTTTG
TTCCCAAAATGCAATTATGATCCTTCCTACTTGATCAAGAAGAAGATTAC
TAAACAATATGCAGGACAGTGGGAGACACATTTCACGTCAGTTTATCCTC
CTGATGAGACAGATATGGTTATTTACCACCCAGGAATGAAAGACCCACAC
ATCATCTATGGTAATCCTTTACTGAAACGTGATGTGGCTGATTTCATTGT
TGAAAAAGTGGTCAATGCCATCAAAGAGAAACATAAAGATAAATATCAAT
TGAAAGAAATCCTCTCAGTCGAACAGAACGAAGATGACGTCAAAGGTGAT
CGTTACTTAGTGGAACTGGAACTTTTGAACGACCAAGATGAAAAAACATA
TCGATTCGCCGAATATTTATATCATCCAAAAGGCAGCAACCAGCTATGTT
ACCCTGAGAATTTCAAATGGAATAAAACAGCTGAAGTGAACCTCATTATT
ACTTCAGCTGGTCAGAGTCGTTGGTTAATTCACTTCATAAACACTGTCAA
TCAGATTTATAAAGAGACCAATGATGAGAACATTGCAATTACTATTGTGG
ATTTTGACAACAAGGACACTGGTGTAATGAAAGCATTGAAAGAATCACCA
TTGAAAAAATACACTTATATCAGGAGAAAGGGCAAATTTCATAAAACACT
AGCGCTGAATGATGCAGCAGCTTCCATCACCAATCCTGATGCTATTGTCA
TGCAAGTTGATCTTCATTTGGTCATACCAGCTGACTTCATCGACAATGTT
CGGAAGCATACTATCCAAGGCAGAATGGCTTGTAGTCCATTGTTGAATCG
TTTGCAATGTGGCGCAACACCTCAACATCCAACTGGCTATTGGGAAGATG
AAGGCTATGGTATCTTTGGTATCTACAAATCAGACTGGAATTACGTGGGT
GGTATGAACGCCAAAGGCTTTCAAGACAAATGGGGTGGAGAGGATTGGGA
ACTGTTAGATTCTGTATTGAGTCATGGATTTGAATGTGAAagactaaaaa
ttaaaaatttccatcacGTTTTTCATTCCAAAAAGAACATGTGGAATAAT
TTATTGTTCACGTGATATCTGGTTTTGGTGCAATTTGATATTCTCATCTA
ATGCCTTGCTGCATCTGGTTGGATTGTTAATCTGTAATAAATAGAGTTCA
ATCTATAAAATGTTGATGTTGATAGTTCTGTTGAAGCTAAATAATTCAGT
ATTGCTCCGAATCTTTTTTCTACACAGTACTTTaactcaagaaaaaaaat
tcaacaaatgTACAAGAGATTATTCAAGGATAAAATTTTGCGGTAAAAAA
ATTGTGCTGGATTTTGTGGATTTTAGTTTCATCTGTGAAATAAAGTCCAA
TAGAAATTTGTAAAGGTCATGCTCGAATTATCTTTTGAATAGACCGAATA
TAGCATCAGAATCTTATGCTATCTCTAGAGTTGATTAGTGGTTGAGAAAG
GTCGGTCCATATGGAAATGCCCATTCTAAGTTCAGTCTTTTTAACATTCA
TAAAGATTTTTACTCCATGTTtaataaaaggataaaaa Run BLAST on NCBI transcript from alignment at sc0000295:165778..169301+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018260 ID=TCONS_00018260|Name=TCONS_00018260|organism=Clytia hemisphaerica|type=transcript|length=3524bp|location=Sequence derived from alignment at sc0000295:165778..169301+ (Clytia hemisphaerica)
tagggataAGAAAAGACATTCTTTAATTGAATAAGTGAATTAGGTGTATC
TGTTCGGATATAGTTACAACTGAGAGAAATTCCTTGAGGAATCAGAAGAT
GCTTCTAAGGAAAGGTTAGTTTCATTTTATCTTTGCCTTCAAGGTAAGAT
GTTGATTTAATGGCAATTTGTAATATTTTGCTGATGATCTAgcatttctc
aatattttgaaagtttcaataGAATTAGTTTAGAAATCTtaccttttttg
ttttatatgCCCTTAAATTTCATTATCCAATTCctcaatatttcaatttt
ctttgcCATAGCAAGCAGAGAAAAGATGAAGAAACTGCTGATCCTAGTTT
TTATTGCTGGTTTCTTTTATTTGTTCCTCAAAATCTCGAATATTACTCAA
AAACAATCACAAAAGTCTCCACCAGCCTTCCAATCAAGTTACATCATTTT
GAGGCAAGGAAGTTCATTGCCGCTATTTGGTGCTATACAAAGCCAAAGGC
GTCTAATTGGTGTGTCTGAAATTCTGTATAACCCTGAAATTGAACTTGAA
GCACGCGATTACATTCCTGTCAAAGTGCCAACAATCAGTGCACCAGAACA
AGAAACAAACTCTTTAAACCTCTACTCATGGACAGAGATATGTAATAAGA
ATATAGATAGTTTGATCTATCATCCATTGTTCCCTCATCTACCTGAATAT
AAAAAATCAACAGTCAAGTTAGACCTGAATATAGGCAAGAACACAGGTGT
CTATTTATTTGGTAAATTGAAGCCAGGGATGGCTGGTGTATATAGATTCC
ATGCATTATCTACCAAAATTGCATTCCAAGTATGGCTATCAAGTGATGAG
AACCCGTCCAATTCCAAACTGATATTACACGAGAATCTTGTCCGGTCAAA
AGACTTAGAACTTTTCAATTCACCTTATCATATCAGTATTGTTCTAAAAA
CGGGCACCTCCCCTGgtaaattttcattgaaatggtTAACACCAGGCAAG
AAAGAATACACTTTGATCCCATCAAATAATCTAGAATCTTATCCACCGGA
CAGTCCAATGGTGCGTGAAGAGAACCTTCAAAAGATGATGATTTTGGATA
AGAAAATACCTTTGCGTGATATGTACGATTCTgaccaaaacaaaagaaga
gctTTGATGTTCAAACTACCGTTCATCCCTGAAGAAGACATTGAAGGTTT
GTTCCCAAAATGCAATTATGATCCTTCCTACTTGATCAAGAAGAAGATTA
CTAAACAATATGCAGGACAGTGGGAGACACATTTCACGTCAGTTTATCCT
CCTGATGAGACAGATATGGTTATTTACCACCCAGGAATGAAAGACCCACA
CATCATCTATGGTAATCCTTTACTGAAACGTGATGTGGCTGATTTCATTG
TTGAAAAAGTGGTCAATGCCATCAAAGAGAAACATAAAGAGTAAGTTTAT
TTTTATATACTACCCTTGAATGGAAGTACTTAAAAGTTCACCCACCTTGA
TGAACACTTTCGGTTCTTTTAACAACTTCATCCAACTGTTTGCTCAAATC
AAGCTTCAAGACCTCAGTGAATGGTGACCATTTACCTTAactggattaaa
tttcgcgtggattgatttttaaaatgttgtccatgcaaaaattttggatt
ttcaattCGCGAAGCTGcgcgaagaaaaaaaatccactTTATTCTTTTTA
GTCATTCCTTGTGACGATGTGAAGCTCTGACGTTTTGTATATCGAGAATA
ACTCTTCAATGTTCGAGTTATTTCAAATGAATGATAAAATGCTCCTATGA
ACTGATTGCCTTGAAAACTGGCTGAGTCCGAAATATTCCggaaaaatcaa
ataataataGCCGCATTCCTTATTCCGCATTATTAGCGTTCGAAATAATA
TCATTCTATACAcatattttttgtcattcttcCATAGTAAATATCAATTG
AAAGAAATCCTCTCAGTCGAACAGAACGAAGATGACGTCAAAGGTGATCG
TTACTTAGTGGAACTGGAACTTTTGAACGACCAAGATGAAAAAACATATC
GATTCGCCGAATATTTATATCATCCAAAAGGCAGCAACCAGCTATGTTAC
CCTGAGAATTTCAAATGGAATAAAACAGCTGAAGTGAACCTCATTATTAC
TTCAGCTGGTCAGAGTCGTTGGTTAATTCACTTCATAAACACTGTCAATC
AGATTTATAAAGAGACCAATGATGAGAACATTGCAATTACTATTGTGGAT
TTTGACAACAAGGACACTGGTGTAATGAAAGCATTGAAAGAATCACCATT
GAAAAAATACACTTATATCAGGAGAAAGGGCAAATTTCATAAAACACTAG
CGCTGAATGATGCAGCAGCTTCCATCACCAATCCTGATGCTATTGTCATG
CAAGTTGATCTTCATTTGGTCATACCAGCTGACTTCATCGACAATGTTCG
GAAGGTAATTGCACTATTTATCATATCAAGCTCTTTGCTCTTCCAGCAAT
TTATGTACACACCGTTGTGTGCCCTAGTCATTATTTTCTAGCTTTGGAAG
AAGAACTCCACTTCTGCTAAGTTTGTTTCTTGTCACACTACAATGATTTA
AAGCTTTGTTATGCTGTCGCAAGTTATGTTAGAGCGAATGGCGATATTTG
AGATTTTCGTAATCAAATGGGCTTTTTTTTTCATGCCAGTTTAGTGACAG
GTATGTGTActaattttactttttgttttataatttgTTTAGCATACTAT
CCAAGGCAGAATGGCTTGTAGTCCATTGTTGAATCGTTTGCAATGTGGCG
CAACACCTCAACATCCAACTGGCTATTGGGAAGATGAAGGCTATGGTATC
TTTGGTATCTACAAATCAGACTGGAATTACGTGGGTGGTATGAACGCCAA
AGGCTTTCAAGACAAATGGGGTGGAGAGGATTGGGAACTGTTAGATTCTG
TATTGAGTCATGGATTTGAATGTGAAagactaaaaattaaaaatttccat
cacGTTTTTCATTCCAAAAAGAACATGTGGAATAATTTATTGTTCACGTG
ATATCTGGTTTTGGTGCAATTTGATATTCTCATCTAATGCCTTGCTGCAT
CTGGTTGGATTGTTAATCTGTAATAAATAGAGTTCAATCTATAAAATGTT
GATGTTGATAGTTCTGTTGAAGCTAAATAATTCAGTATTGCTCCGAATCT
TTTTTCTACACAGTACTTTaactcaagaaaaaaaattcaacaaatgTACA
AGAGATTATTCAAGGATAAAATTTTGCGGTAAAAAAATTGTGCTGGATTT
TGTGGATTTTAGTTTCATCTGTGAAATAAAGTCCAATAGAAATTTGTAAA
GGTCATGCTCGAATTATCTTTTGAATAGACCGAATATAGCATCAGAATCT
TATGCTATCTCTAGAGTTGATTAGTGGTTGAGAAAGGTCGGTCCATATGG
AAATGCCCATTCTAAGTTCAGTCTTTTTAACATTCATAAAGATTTTTACT
CCATGTTtaataaaaggataaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018260-exon-sc0000295-1491911889:165778..165891 | TCONS_00018260-exon-sc0000295-1491911889:165778..165891 | Clytia hemisphaerica | exon |
| TCONS_00018260-exon-sc0000295-1510915933:165778..165891 | TCONS_00018260-exon-sc0000295-1510915933:165778..165891 | Clytia hemisphaerica | exon |
| TCONS_00018260-exon-sc0000295-1575043694:165778..165891 | TCONS_00018260-exon-sc0000295-1575043694:165778..165891 | Clytia hemisphaerica | exon |
| TCONS_00018260-exon-sc0000295-1491911889:166093..167217 | TCONS_00018260-exon-sc0000295-1491911889:166093..167217 | Clytia hemisphaerica | exon |
| TCONS_00018260-exon-sc0000295-1510915933:166093..167217 | TCONS_00018260-exon-sc0000295-1510915933:166093..167217 | Clytia hemisphaerica | exon |
| TCONS_00018260-exon-sc0000295-1575043694:166093..167217 | TCONS_00018260-exon-sc0000295-1575043694:166093..167217 | Clytia hemisphaerica | exon |
| TCONS_00018260-exon-sc0000295-1491911889:167715..168231 | TCONS_00018260-exon-sc0000295-1491911889:167715..168231 | Clytia hemisphaerica | exon |
| TCONS_00018260-exon-sc0000295-1510915933:167715..168231 | TCONS_00018260-exon-sc0000295-1510915933:167715..168231 | Clytia hemisphaerica | exon |
| TCONS_00018260-exon-sc0000295-1575043694:167715..168231 | TCONS_00018260-exon-sc0000295-1575043694:167715..168231 | Clytia hemisphaerica | exon |
| TCONS_00018260-exon-sc0000295-1491911889:168520..169301 | TCONS_00018260-exon-sc0000295-1491911889:168520..169301 | Clytia hemisphaerica | exon |
| TCONS_00018260-exon-sc0000295-1510915933:168520..169301 | TCONS_00018260-exon-sc0000295-1510915933:168520..169301 | Clytia hemisphaerica | exon |
| TCONS_00018260-exon-sc0000295-1575043694:168520..169301 | TCONS_00018260-exon-sc0000295-1575043694:168520..169301 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000295 | supercontig | sc0000295:165778..169301 + |
Blast
BLAST of TCONS_00018260 vs. Swiss-Prot (Human)
Match: B4GN4 (N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B4GALNT4 PE=1 SV=1) HSP 1 Score: 258.84 bits (660), Expect = 1.358e-72 Identity = 114/322 (35.40%), Postives = 187/322 (58.07%), Query Frame = 2
Query: 1154 IYGNPLLKRDVADFIVEKVVNAIKEKHKDKYQLKEILSVEQNEDDVKGDRYLVELELLNDQDEKTYRFAEYLY------------------------HPKGSNQLCYPENFKWNKTAEVNLIITSAGQSRWLIHFINTVNQIYKETNDENIAITIVDFDNKDTGVMKALKESPLKKYTYIRRKGKFHKTLALNDAAASITNPDAIVMQVDLHLVIPADFIDNVRKHTIQGRMACSPLLNRLQCGATPQHPTGYWEDEGYGIFGIYKSDWNYVGGMNAKGFQDKWGGEDWELLDSVLSHGFECERLKIKNFHHVFHSKKNMWN 2047
+ GN L A + + + + +H ++ L I++VE+ D +G R+L+ELEL ++ R +EY++ P G +LC P W + V+ I+ Q+RW+ F+ + ++ T D ++ +VDF+++D V +AL+ + L +Y Y+RR G F ++ L ++ + +IV DLH+ P + +D +RKH ++GR+A +P++ RL CG++P+ P GYWE G+G+FGIYKSD++ VGGMN + F+D+WGGEDWELLD VL G E ERL+++NF+H +HSK+ MW+
Sbjct: 707 VSGNLQLPEAEAVDVTAQYMERLNARHGGRFALLRIVNVEKRRDSARGSRFLLELEL-QERGGGRLRLSEYVFLRLPGARVGDADGESPEPAPAASVRPDGRPELCRPLRLAWRQDVMVHFIVPVKNQARWVAQFLADMAALHARTGDSRFSVVLVDFESEDMDVERALRAARLPRYQYLRRTGNFERSAGLQAGVDAVEDASSIVFLCDLHIHFPPNILDGIRKHCVEGRLAFAPVVMRLSCGSSPRDPHGYWEVNGFGLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLDRVLQAGLEVERLRLRNFYHHYHSKRGMWS 1027
The following BLAST results are available for this feature:
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