|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018273 ID=TCONS_00018273|Name=TCONS_00018273|organism=Clytia hemisphaerica|type=transcript|length=2765bp
TGAAAAATAAGAGAACATTTCTTCGTTTCTTTTGTTGTgataataaaaat
gaagaaaaataaaaaataatattggagaagggagaaaaatagaagaagaa
cgaagaaaaaataaagattcataaaattataaagaagaactttaaaagat
cGGTTTGTAACCTTGATATCAACAATTACTGGTCATTAAGAAGACAAAAG
AAACACGAGAGCCATCTTCTGATTGAAGAAGATCTTCATACAAAACCTAT
GTCACGTGAACACACCAACCTCTTACGAGAAGCAACCGAGAAACGACGAA
ACATGTCGGTCAaatgtcgttctttttgtcggaCATCATGCTGTCGCTTA
AAGCCGGAAACCAATTTAGCATTGATGTTATGTTTGGTATTTTATTTGTA
CATTTGTCTGGGTGGAGCATTGTTTTTGCTGTTGGAAGGACAAGCAGAAA
CACCAGATGGTACAAACATCCATAAAGATCGTATGCAAGGATTAATGGAC
AATTTAAAGATAGTATTGGATCGAGACAACACGAAACAGATTACACATTA
TTGTGAGCAATCCACTGGTTTCCAGATGAGGAAAAAACCAGCACATGAGA
ATCTATGGTCATTCTTAGAGTCGACTGATTTTGCATACCAAGTGGTGACT
GGACAAGGAACAATTCAATCTACAAGAACCATTTTCACAACTGGTGGCAA
GATCTCATACATCATTTTCCTTTTCCTTGGAATACCTCTCACAGTATTGA
CCTTCAGAGCTACTGGGCAACGTTTAAACATAATGGTTTATGCTTTCATT
CGGTTTATTAACGTCAAAGTATTCAGTAGGCAACTAACAGCCAATGTCCA
CATAAAAGCCTTGATCTtaaacattttcatcttcataatCACTATTCTGA
TTGGGGCGAGCATGTATTGTGTCACACAAGGGTGGAGTTATCTGGACTCA
CTCTTCTACACTATGAGCGTTTCATTTACCGTTAGTAACAGCCAAGAAAA
TATAGTCAACCAAAACATTGCAATGAATTCGAATAAGGATAAGGCGTACC
GAATCCTATTCAATTTTTATACTTTTGTGGCTTATACAGTCTTGGCTTCG
TTGACGTGGAGTGCACATCATTTTACAAGACATATGAGATTTAAAGCACA
GAATCGCCAGTTAAAGAATGGAGACGTACATTCGACTTGTCCATGGGTTG
AAGTGACACGAAGTAAAACAGCTTCACCGAGCAAAAGCACCAGAGAAAGA
GAGACTGATCGAGAATCTGTTTGTTAACGTTATGATTGATGAAAAAGTGA
ATAAATGAGTGAACGAATTGAAAACTACAATTATCATCATTCTGTTAACC
TTGGAGTGTGCAATGAGGTAAGAAGTAGCATACTCTTTAGAGAGAAAATC
AGTCCTTTCATCTCACATGCAGAGTAGCAGATTACACAAGAAAAATCACG
tcagagaaattttgaaataaagatcAAGGTAAGAAAACATCGATACTGTT
GATATTAAGAAGAATGGACAGATTTCAATGCACCCTTGGTTAGCAGCAAG
TACCAATTGAGATGTTTCAGGAACACATAAAATGAACAATCCAAGCCAAA
AACACAGTATGGACTACATTTCTTCACctaaaaatagagaaaattttgaa
aggttAACTACTCGTCACGTGTgtcaagttaaaaaaatttgaaataattc
tccACTATTTGATTGATGATCGATTGACGAAAATATAATGCCGAAATGTT
GTCCAGAGAGGAAAGAGGAAAGATTTTGATTGACTAATTCTTGCCGAAAA
TATGTTCTTTGTTTATAAGAATTAACTGAATACGTATTCGTTCTCGTTTT
AGTAACGAAATAACTGTCCGATAATTAGAGTAGATTTATCCACAGCATCG
GAATCCCTAATTGACGAGATTATAATTCAGTCAATTCTTCACAATCGTTT
AATTTCAAGTGCAAATAATATTgtttgatttttccaaaaataattcgAAA
ATAATGATGTGTAAatagatgtcttccttttgttttctttttctaaaaaa
atgtcataaaataatttaatagaGAATATTTACACTTTTCTGTTCGTTTT
TAATTTATATacaatgattttaaaattttgtctgGACATAAATATATATA
GATTTATTTCTTACTTTTAATCTACGTATAAATCTCTTTAAAATTGTCAG
ATCGATGAACTAGAAAAAGGTCGCTTAGCCCGGACATGGCAACAAGTAAC
AGGGACAAGAAAATGAGGTCTGGGACGGAATAATGGTTATGGTTGTAGTT
GAGTGATGGTGCTATGAATACGAATAGGGCCGTTAAACAGACAAttcaaa
tttgagaaaacaTCAAAGTAACGACAAAGTAATCCCTATCCTCTTTCTAG
AGAGACAAATGCAGAAAGATTCTAAATAATACCTATATCTATGAATTATC
CCAAACAGGATAAAATTGAACAACTAAATAATATTCTACACTTCGTAAAA
AATTGAATACcttttttctattaaaaattttggaaaaggaTATAAANATT
CTACACTTCGTAAAAAATTGAATACCTTTTTTCTAttaaacatttttgga
aaaggATATAAATGATGATAACAAGATGAAGGACTTTCTAAGGATGCATA
TTTCTTCCTACCATGGATATGGTGTCCTACAAAGAATGGAATAAAGAAGA
AATGGTTAGAAATCAGCACACcaaaagaaacatttttcgagttctcggaa
ttttttttcatagcc Run BLAST on NCBI transcript from alignment at sc0000295:25369..30232- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018273 ID=TCONS_00018273|Name=TCONS_00018273|organism=Clytia hemisphaerica|type=transcript|length=4864bp|location=Sequence derived from alignment at sc0000295:25369..30232- (Clytia hemisphaerica)
TGAAAAATAAGAGAACATTTCTTCGTTTCTTTTGTTGTGATAATAAAAAT
GAAGAAAAATAAAAAATAATATTGGAGAAGGGAGAAAAATAGAAGAAGAA
CGAAGAAAAAATAAAGATTCATAAAATTATAAAGAAGAACTTTAAAAGTA
AGTCTGAAATAAGAAATTTTTGTAGGCTTGAGCCTTTAATCTTTTTGGGT
AAATTATAGGGTCTAAAAAAACTTTAAGCAGCATATATAAATTTAATGTA
TGTAAATTCACGGATAAATTATTTTGGTCTTTGATCGATTAATTTGTTTA
AGGGGTTAATCAAGTTTTATACAATCAGAAGATTAAACGATTGAAATATT
TTGAGAAAAAGGGCGAAGTATAATCAAAGTTTGAAGGCACATATATCACA
ACTGTAGTAGTTTCTTACTTTCTTGAGTCCAAAGCTTTTTGGATTTCTAA
AATCTTGAGAAATACAGGTATTTAGACAAATAAATAATAGGACAGAGCAG
AACAGATAAGTTGAAAAGAAATACGACTGTTCTAAATTCGAAAATGGAAA
AGGTTATCACACGTTACAACGTTGTTTTTTATTTTCAGGATCGGTTTGTA
ACCTTGACATCAACAATTACTGGTCATTAAGAAGACAAAAGAAACACAAG
ACNTGGAGCCTGATTTATAGGGGCTGGAAACGAGTTTTGGTTTTAATGAA
CAAAATGAAGAATGGTAAAATTAGAAAAACTACTCCCCTTTTATCATAAT
TGGAGTAGAAAATCGCTTTCGTCACCGAAAATATATTTCACTGTTTGAAG
GAAAAATATATAGAATTATGGGAATAAGGAAAACAAAGAAATATTTAGCC
CCCTGCATATTCAGTCTTTTTAATAATACTTTACAATATATTAAGTGCTC
GACAGGGGGTAGTTAAATGAAATTTTTGTGTGCTTATAAGCTCAGCTAGT
TTTCAATTTGGGAAAAAAATTTTCGACTAGTAGATGAAAAATAAGAGAAC
ATTTCTTCGTTTCTTTTGTTGTGATAATAAAAATGAAGAAAAATAAAAAA
TAATATTGGAGAAGGGAGAAAAATAGAAGAAGAACGAAGAAAAAATAAAG
ATTCATAAAATTATAAAGAAGAACTTTAAAAGTAAGTCTGAAATAAGAAA
TTTTTGTAGGCTTGAGCCTTTAATCTTTTTGGGTAAATTATAGGGTCTAA
AAAAACTTTAAGCAGCATATATAAATTTAATGTATGTAAATTCACGGATA
AATTATTTTGGTCTTTGATCGATTAATTTGTTTAAGGGGTTAATCAAGTT
TTATACAATCAGAAGATTAAACGATTGAAATATTTTGAGAAAAAGGGCGA
AGTATAATCAAAGTTTGAAGGCACATATATCACAACTGTAGTAGTTTCTT
ACTTTCTTGAGTCCAAAGCTTTTTGGATTTCTAAAATCTTGAGAAATACA
GGTATTTAGACAAATAAATAATAGGACAGAGCAGAACAGATAAGTTGAAA
AGAAATACAACTGTTCGAAATTCGAAAATGGAAAAGGTTATCACACGTTC
CAACGTTGTTTTTTATTTTCAGGATCGGTTTGTAACCTTGATATCAACAA
TTACTGGTCATTAAGAAGACAAAAGAAACACGAGAGCCATCTTCTGATTG
AAGAAGATCTTCATACAAAACCTATGTCACGTGAACACACCAACCTCTTA
CGAGAAGCAACCGAGAAACGACGAAACATGTCGGTCAAATGTCGTTCTTT
TTGTCGGACATCATGCTGTCGCTTAAAGCCGGAAACCAATTTAGCATTGA
TGTTATGTTTGGTATTTTATTTGTACATTTGTCTGGGTGGAGCATTGTTT
TTGCTGTTGGAAGGACAAGCAGAAACACCAGATGGTACAAACATCCATAA
AGATCGTATGCAAGGATTAATGGTACGTTATTTGAAGGTTTCTAGCATTA
GTTTTACAGGTTTTTGATAAAATCAACAATTCAAGGACATGAAGATTGGC
TAAAACACCTTATAGGAAATTAGTCTCGACAATCTATGATTTGAAAAAGA
TCGTGGAAGCAGAAAATGACGTTTACATCGTATTTTCCAAAGAAAAATTT
TGTAAAGATAAATACATTCAAACACTTATGGACCAATCAAATATGCTTCT
TGAGTCTCCATAAGAGTTTGTATCAGACAACCCATCAAAAAACCATCCAT
CTCCAACCAAACATTGTCCAAAGACCAACCAAAATGTTCCAATGTTTTCT
ACTTCTTATTTTAGGACAATTTAAAGATAGTATTGGATCGAGACAACACG
AAACAGATTACACATTATTGTGAGCAATCCACTGGTTTCCAGATGAGGAA
AAAACCAGCACATGAGAATCTATGGTCATTCTTAGAGTCGACTGATTTTG
CATACCAAGTGGTGACTGGACAAGGAACAAGTAAGTCCATGCAAAAGATT
TATCCAAAAATAATCTTGCACTTGCCATGAATATTGTTTAATTATAATTC
AGTAATGTAATAACGAATCAGTTTATTGAACGATTCTCACTGGTACAGTG
ATAAAGGATGTTTTCTATCGTAAAAGTGTAATAGATGGGCAAGCATCTAT
TCATTGGAATCAATATCGAAGCCACATGCAATAGATTGGGCGTATGAACG
TAATTCATTAAGTCAACTTTATTCATCTCGTAGTTGAACGACCATTACTT
TCGTTCTTCTTACAGAGTTAACAAAGAATTCATTCAATATTTTACTTTCT
TTTCTATTTCAGTTCAATCTACAAGAACCATTTTCACAACTGGTGGCAAG
ATCTCATACATCATTTTCCTTTTCCTTGGAATACCTCTCACAGTATTGAC
CTTCAGAGCTACTGGGCAACGTTTAAACATAATGGTTTATGCTTTCATTC
GGTTTATTAACGTCAAAGTATTCAGTAGGCAACTAACAGCCAATGTCCAC
ATAAAAGCCTTGATCTTAAACATTTTCATCTTCATAATCACTATTCTGAT
TGGGGCGAGCATGTATTGTGTCACACAAGGGTGGAGTTATCTGGACTCAC
TCTTCTACACTATGAGCGTTTCATTTACCGTTAGTAACAGCCAAGAAAAT
ATAGTCAACCAAAACATTGCAATGAATTCGAATAAGGATAAGGCGTACCG
AATCCTATTCAATTTTTATACTTTTGTGGCTTATACAGTCTTGGCTTCGT
TGACGTGGAGTGCACATCATTTTACAAGACATATGAGATTTAAAGCACAG
AATCGCCAGTTAAAGAATGGAGACGTACATTCGACTTGTCCATGGGTTGA
AGTGACACGAAGTAAAACAGCTTCACCGAGCAAAAGCACCAGAGAAAGAG
AGACTGATCGAGAATCTGTTTGTTAACGTTATGATTGATGAAAAAGTGAA
TAAATGAGTGAACGAATTGAAAACTACAATTATCATCATTCTGTTAACCT
TGGAGTGTGCAATGAGGTAAGAAGTAGCATACTCTTTAGAGAGAAAATCA
GTCCTTTCATCTCACATGCAGAGTAGCAGATTACACAAGAAAAATCACGT
CAGAGAAATTTTGAAATAAAGATCAAGGTAAGAAAACATCGATACTGTTG
ATATTAAGAAGAATGGACAGATTTCAATGCACCCTTGGTTAGCAGCAAGT
ACCAATTGAGATGTTTCAGGAACACATAAAATGAACAATCCAAGCCAAAA
ACACAGTATGGACTACATTTCTTCACCTAAAAATAGAGAAAATTTTGAAA
GGTTAACTACTCGTCACGTGTGTCAAGTTAAAAAAATTTGAAATAATTCT
CCACTATTTGATTGATGATCGATTGACGAAAATATAATGCCGAAATGTTG
TCCAGAGAGGAAAGAGGAAAGATTTTGATTGACTAATTCTTGCCGAAAAT
ATGTTCTTTGTTTATAAGAATTAACTGAATACGTATTCGTTCTCGTTTTA
GTAACGAAATAACTGTCCGATAATTAGAGTAGATTTATCCACAGCATCGG
AATCCCTAATTGACGAGATTATAATTCAGTCAATTCTTCACAATCGTTTA
ATTTCAAGTGCAAATAATATTGTTTGATTTTTCCAAAAATAATTCGAAAA
TAATGATGTGTAAATAGATGTCTTCCTTTTGTTTTCTTTTTCTAAAAAAA
TGTCATAAAATAATTTAATAGAGAATATTTACACTTTTCTGTTCGTTTTT
AATTTATATACAATGATTTTAAAATTTTGTCTGGACATAAATATATATAG
ATTTATTTCTTACTTTTAATCTACGTATAAATCTCTTTAAAATTGTCAGA
TCGATGAACTAGAAAAAGGTCGCTTAGCCCGGACATGGCAACAAGTAACA
GGGACAAGAAAATGAGGTCTGGGACGGAATAATGGTTATGGTTGTAGTTG
AGTGATGGTGCTATGAATACGAATAGGGCCGTTAAACAGACAATTCAAAT
TTGAGAAAACATCAAAGTAACGACAAAGTAATCCCTATCCTCTTTCTAGA
GAGACAAATGCAGAAAGATTCTAAATAATACCTATATCTATGAATTATCC
CAAACAGGATAAAATTGAACAACTAAATAATATTCTACACTTCGTAAAAA
ATTGAATACCTTTTTTCTATTAAAAATTTTGGAAAAGGATATAAANATTC
TACACTTCGTAAAAAATTGAATACCTTTTTTCTATTAAACATTTTTGGAA
AAGGATATAAATGATGATAACAAGATGAAGGACTTTCTAAGGATGCATAT
TTCTTCCTACCATGGATATGGTGTCCTACAAAGAATGGAATAAAGAAGAA
ATGGTTAGAAATCAGCACACCAAAAGAAACATTTTTCGAGTTCTCGGAAT
TTTTTTTCATAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018273-exon-sc0000295-1575043694:30086..30232 | TCONS_00018273-exon-sc0000295-1575043694:30086..30232 | Clytia hemisphaerica | exon |
| TCONS_00018273-exon-sc0000295-1575043694:28311..28660 | TCONS_00018273-exon-sc0000295-1575043694:28311..28660 | Clytia hemisphaerica | exon |
| TCONS_00018273-exon-sc0000295-1575043694:27803..27968 | TCONS_00018273-exon-sc0000295-1575043694:27803..27968 | Clytia hemisphaerica | exon |
| TCONS_00018273-exon-sc0000295-1575043694:25369..27470 | TCONS_00018273-exon-sc0000295-1575043694:25369..27470 | Clytia hemisphaerica | exon |
| TCONS_00018273-exon-sc0000295-1510915933:30086..30232 | TCONS_00018273-exon-sc0000295-1510915933:30086..30232 | Clytia hemisphaerica | exon |
| TCONS_00018273-exon-sc0000295-1510915933:28311..28660 | TCONS_00018273-exon-sc0000295-1510915933:28311..28660 | Clytia hemisphaerica | exon |
| TCONS_00018273-exon-sc0000295-1510915933:27803..27968 | TCONS_00018273-exon-sc0000295-1510915933:27803..27968 | Clytia hemisphaerica | exon |
| TCONS_00018273-exon-sc0000295-1510915933:25369..27470 | TCONS_00018273-exon-sc0000295-1510915933:25369..27470 | Clytia hemisphaerica | exon |
| TCONS_00018273-exon-sc0000295-1491911889:30086..30232 | TCONS_00018273-exon-sc0000295-1491911889:30086..30232 | Clytia hemisphaerica | exon |
| TCONS_00018273-exon-sc0000295-1491911889:28311..28660 | TCONS_00018273-exon-sc0000295-1491911889:28311..28660 | Clytia hemisphaerica | exon |
| TCONS_00018273-exon-sc0000295-1491911889:27803..27968 | TCONS_00018273-exon-sc0000295-1491911889:27803..27968 | Clytia hemisphaerica | exon |
| TCONS_00018273-exon-sc0000295-1491911889:25369..27470 | TCONS_00018273-exon-sc0000295-1491911889:25369..27470 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000295 | supercontig | sc0000295:25369..30232 - |
Blast
The following BLAST results are available for this feature:
|
