TCONS_00018286 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018286
Unique NameTCONS_00018286
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018286 ID=TCONS_00018286|Name=TCONS_00018286|organism=Clytia hemisphaerica|type=transcript|length=1236bp
CAAACTGTTACCATTTACTAGGGTTGTTTAAAAGTAAATAAAATGGAGCA
GTTATTGAATAACAAAAGTATGAGGGAACTAACACCAGAAGAGAAGTGGA
GGCAGGACCATGAAAAGCTACACGCTAAGCACAGAGGTCACGAAGCAATG
CATTTGGAAATGGTGCTCATTCTTTTTGCCACTTTATTTGTGATGCAAAT
AGTGCTGTTTAAATGGCAACAAATGCACAGCAGATCGTACAAGatGGTGA
CGTTGATAGGGATGTGGGTCTTCCCTTTCATCTTCACAGTAAGGCATGGA
TGGTATCGGATGATATCTGTATGGTCGATCTTCACAATCATCACACTCTT
TGTCATATGGAAAGCCACCAGGTTTCCTGTAAACCCAACAACCCCAAGGC
TCGTATACAAATGGTTTTACAACGTGCATCGTGTAACATATGCTTTAGGA
ATCATCGGTTACCTAATTATCATGATGACTTTCATGGGGTTCAACGTGTT
GCTGCTCATCAAGCCTGAATTCTCAATGCAAGCTGGTGTCATTATCATAT
TTTATGGACTTTATTATGGTGTGCTAGGTAGAGATTGTGCTGAGTTGTGT
GCAGATAAAATGGCTGCTAAAATGGGGTACTACAGTGAGACTGGTCTACC
TTCCAAGCGTCTGATGCCAAACATCTGTGCAGTGTGTGGTCAGGAGTTGA
CGCTGACAGCTATGGAAGATATGGAAGAGGATGATACTGAGAAAAGTTAT
AAATTATCTTGTGGTCATTTattCCACGAGTTTTGTATACGTGGTTGGTG
CATCGTCGGGAAGAAACAGACCTGTCCGTATTGTAAAGAAAAAGTCGATC
TTAAAAGAATGTTCAAGAATCCATGGGAACGACCTCACATTTTATTTGGA
CAACTGTTGGATTGGTTGCGTTATTTCATCGTATGGCTTCCAGTCATCAT
TCTCGTAACACGTGGTATTAATTACGAACTGGGGCTAGAATGAAATTGTA
CAGTCAAacccaaatttcaaaaaggctCAAAAATTCGATTTAGTCTCCCA
ACGGATGAGATTTGTTCTTACATGGAACGttataatactaaaatcaaaca
aatttcTGACAATGAATTGGTAGAAAAAACTTTTCCGTTTGTTGCACGCA
CAAGTTCATCATTGCCAACAAAGTAATGTCTGTCATACAATAAAAGATGT
ACCAATATGGTGAATTAGGGTTACAAGATTTTATAC
Run BLAST on NCBI

transcript from alignment at sc0000295:131203..141827-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018286 ID=TCONS_00018286|Name=TCONS_00018286|organism=Clytia hemisphaerica|type=transcript|length=10625bp|location=Sequence derived from alignment at sc0000295:131203..141827- (Clytia hemisphaerica)
CAAACTGTTACCATTTACTAGGGTTGTTTAAAAGTATTCTTTTTTTGATC
TGATTATTAATATTCAATGGTCTGCTGATAGACCCATGTAGCTCTATTAT
CAAGATCTCCCCTTCTTAGGTAAATAAAATGGAGCAGTTATTGAATAACA
AAAGTATGAGGGAACTAACACCAGAAGAGAAGTGGAGGTAAAAGTAGTGT
GATCAAATTCATCAAATTCATCATTGATTTCTGCCCGACTCATAGTTTGA
AAATCCATTTTTCTGACGTTATTTTCGCAGAAATGGGTGTTACCGACTCA
TTTTATTTTTGCCTAAAAACGATGCAAACACAAGTTATTTGTGATTGTAG
CCTTATTAAAACTGCTAAACTAACTTAATGTGTTACACCAATCTCAGTAG
TGTAATCAAACGCTCAGTAGGTATCCTTTTATCATTGTTTTAACCACAGC
ACAAAGCAATATGTCCCAAACACTTGAGTTCTAGAGTCCATTTGCTTCAA
GTTTGAACTCTTTTTTTATACTTTATGGAAACTATGTCAGTGTAATTAGA
CTAACGCCCTTGAGCATGGTAATGAACTTTTGTAATGAAGCTTTTGTAGG
TCTTAGCTTTTCAACCTAACAACATTGGTATCAATTCGAAAGCGATTCTT
TATAGACCCAAATTTTATTCTTATATTTTATATCTTGTTTTTAATATTTA
TATATCTTAAATCATGACATTACGTGTAATTTCATGTGATATTCAAGTCT
TTTAAAAAACATTGTCTCCTTTGTTTTACAGGCAGGACCATGAAAAGCTA
CACGCTAAGCACAGAGGTCACGAAGCAATGCATTTGGAAATGGTGCTCAT
TCTTTTTGCCACTTTATTTGTGATGCAAATAGTGCTGTTTAAATGGCAAC
AAATGCACAGCAGATCGTACAAGGTATTTCTTTGTAAATCTTTTTTTATA
AAAGTACAGAATTTGGTAAAAGCAAAAGCTATGTGGAGGGACTGAAGGAG
AATTTAAAAATTGCATTCCATAGCAATAGAGAAAAAAGCCAACTGCATTT
GCCAGCGCTGTGTTTTGAGGTTGTAAAGATGAATCAAAGTACCTTTCTTT
CAACTACCATGCCTGTCATGGTGACAGTGATCTTACTACTTCAGTGACGT
GCTCCTTTCCTATTTAAATTGATTGCTTCAATAGCAAAAAATATAAAATT
GTTAAATTTTTTATGGAGTATGGGTTTAATTTTATCTTCAGTTCTTAAAA
TAGTATCCATACCATCAAAAAACAGATATGATCCTTTCTTAGCCCCTTAA
GAATATGGGTGACGTGGGAAGAATGAAAACACTTGCATAAAATCGTAAAA
GCATGATTGACGGGTCTTTCTTGCCTTTGATTGGCCAATACTTGTAAACA
TGCAAATTCAAATCATTAAGATGGGGTATGATTTGTGAAATGTGGGGAAA
GTTTTAAAGAATTTGTTCAGACTGAATGATTACAGATTTCTTTTTTTTTG
CAGATGGTGACGTTGATAGGGATGTGGGTCTTCCCTTTCATCTTCACAGT
AAGGCATGGATGGTATCGGATGATATCTGTATGGTCGATCTTCACAATCA
TCACACTCTTTGTCATATGGAAAGCCACCAGGTTTCCTGTAAACCCAACA
ACCCCAAGGTACGTAATTCAGTTATTCTGAAAGATTTGGTTTTTGTACCC
AAAATTTCACAAAAGTTTTTTATATTTGTCTTCTATCTTCTCGTTAACTC
GGCTGGATATAATACAATGATCAAAAGATTGCTTGAATTAAAGTTCCTAC
CAGATTGTTTAAGGGAGGAATTTGCAAAGAACGAAATTCAAAAATAATAC
AATTTACTAAATGTAAGGGTTATTTTGATGCTAAACTACTGGTCAATTGA
CATAGTGTGCAACCCCCCAGAATAGTGGGGGGGGGGTTTGCTGTTTTGGG
TCAGAAATTTCTAGATTTTTTTACTGTTCTAGGCTTTTCTCTTTTTTATT
ATTATACTGTAATTTCTTCAGGGGGAGGGATCTAAAATCTCGGTCATATA
ATATGAATCATACTAAAGTATTTTGGAGAATGTCTTGTATACCACCACCT
TAATTTTGACAAGTGGTATTTTAGTACCCTTGCCAGTCCTTGAATTAAAT
ATTTTAAAGACATTAGGACACAAAGACCACCCAATTTTGGTATTTTCGAG
ACAGATTTTGTCTTCTCAGAACCATTTTCCTCGCGAGTGCTGATTTTATG
CAAGATGATATCTATTTTCCTCAAAAATCTATTAAACAATGCTGCTTCTG
AATTGAGCAAACATTAAAGATATTTGATTGAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCAATAATTTTTGTTTACCTTCTTCGTATTAGTATAATTT
TTCATGGGGATAGTAGTTTTAGCTGGGATCTGGGAGTCTGGATTGGAGGT
GGGAAATTTAGGGTTAGGTGGGACCTGGAACCCCCATTGCACACTATGAT
TGAATTAAATTTAAACATTAAGTTCTTTGCCATTACTGGTTAGAAATAAC
GAAACTGGTGCTTATCTGTCCTTTTCAGGCTCGTATACAAATGGTTTTAC
AACGTGCATCGTGTAACATATGCTTTAGGAATCATCGGTTACCTAATTAT
CATGATGACTTTCATGGGGTTCAACGTGTTGCTGCTCATCAAGCCTGAAT
TCTCAATGCAAGCTGGTGTCATTATCATATTTTATGGACTTTATTATGGT
GTGCTAGGTAGAGATTGTGCTGAGTTGTGTGCAGATAAAATGGCTGCTAA
AATGGGGGTAAGAGAATAATTTAGCTTTTGTATCCAGGGAGACTTATAAA
AATACTTTTTATCATTCCCTTTCTTTATTAGAGACCCATTGACCTGTACC
AACCAATGTTTTGATTTAATATGAAACCCTCTTTAATAAATAAACTCATT
GTTCTTATGCAATGGTTTATGCTTTTGAAGAACGAAGAGTGTATTAAAAA
GTTTACTCGAGAAAATTCACATAAACTCCTAAGTGTACAGAGAGACGAAC
ATGATCTTTTTTTTACTTCTCACAAATTTAGTACTACAGTGAGACTGGTC
TACCTTCCAAGCGTCTGATGCCAAACATCTGTGCAGTGTGTGGTCAGGAG
TTGACGCTGACAGCTATGGAAGATATGGAAGAGGATGATACTGAGAAAAG
TTATAAATTATCTTGTGGTCATTTGTATCCTTTTCTCTCATTGGTTGATT
TTGCAATACACGTTTCTTATGATGACACCTCCATCACAAACATATTTTTT
GAGGACTATAATCAAATTAGCCTCCCTCATGACCATCTTACCACCTTTTT
ATTTTGGCTAATAATTCGCTAAATGAGAGGAGGTAGGTGGGTGATTGCAT
GCACCCTAAAAATGAAAGCTGACAAAAAGGTCGAAGATTTGTCTCCTGTT
TTTGTGGGATTTGGTATTTCTGATTTTGGCCTCTTGACCTGAATAAGCTT
ATGAGAAGTTTCAAGAACTGAACATCCTCTAACTAAAAGACACTCGCAGA
GACCTACACTCTTTTTGGACCTACCTCCGGGTACCCCGGTGGAGGTTCTA
TAAATTAACCCATGTCCGTTCGTCCGTCCGTCCGTTCGTCCGTCCGTCTG
TTACCAGCTTTTCTCAGGATTGGCTCATTAGTTTTTTCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATCCTGTCATTAC
TTTTTTCTGATTTTTTGTACAAAGATGGAGGGCAAGATTCTCTAAAGAAT
GGCTGAAGTGGTTTTTCCTGGAAAATTCTTATTCCCCTTAAAAAACGGAT
TTTCGTATTTTGGGGAAATTCCCTTTAACCAAATAAGAAAATATAGCTTT
TCTCAAAGTTGGCTCATTAGTTTTTTCTGATTTTTTGCACAATGATGCAA
AATGGCAATGCCCAGAACGTGACGGAGCCCGATTTTTGAGAAAAAATTTA
TTTGGGCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTGAAGTGGTTTTTCCCGGAAAATTCTTATTCGCCTT
AAAAAACGGATTTTCGTATTTTGGGGAAATTCCCTTTAACCAAATAAGAA
AATATAGCTTTTATCAATGTTGACTCGTTATTTTTTTCTAATTTGTTGCA
CAATGATGCAAAATGGCAATGCCTAATATGTGTCGGAGCCCGATTTTCGA
AAAAAAATATATTTGGGCAAATTTGGGCCAAAAACTGCCTAAAAATAGGG
TTTTTTGGACTTGGTGCAAAATCCTGTCGTTACTTTTTTCTGATTTTTTG
TACAAAGATGGAGGGCAAGATTCTCTAAAGAATGGCTGAAGTGGTTTTTC
CTGGAAAATTCTTATTCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTTTAAGGAAAATTTTTTGGGCAAATTTGGGCCAAAAAC
AGCTTAAAAGGTTTTTTGGGCCTGAATGGTTTAAGTGATTTTCGTATTTG
GGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCTAATTCTTTCTAGATCAGGAGATATAAGCCCTTA
AAGTTTGAACTAGCGATTTTTAAAAAAAAACTTAGAAAAAAAGACCCTGG
CACTCAAAGGGTTAATCCAGTCAAATTCATGGTTCTTATGTACCCTATAT
GGTTTTTCCAAATTTTGTTTTACCGAAAACAGTAATATCTCTTCTCATCA
GTGAATGTAATTTATGATAATACTAGCTGTTCCGGTGTCGTCGGAGACGA
CTTTGCTGCAATTTTTTTTCTCGCTAACTTTAAATGTGCCATCCAGCTCT
CGGTAATTTGAAAAACTTTGGTGTTAAGATAATGGACATGGAATGAGATT
CTTCAGGCAATGGCGGAAAATACATGTGGGTCATCCATTTAGTACGTACG
CAAAAAATGTCCAAATATTTGACACCACCTTCCCTGCGTACGTACTACAT
GGATTTTTTCTGTGGTTCATTGTCAACACCGATATCTTTTTCCTTGACAG
AAAATTTATTTTAGATTCCACGAGTTTTGTATACGTGGTTGGTGCATCGT
CGGGAAGAAACAGACCTGTCCGTATTGTAAAGAAAAAGTCGATCTTAAAA
GAATGTTCAAGAATCCGTATCCTTTTCATCGTAGATATTGCTGAAAATTG
GTCGGTTTTTTTATAGGCTTTTGATCTTTGGTATGAAGTAAATAGTTTTG
ATTTGTTCAGATTATCACGTCAAGACCCTTACCATCAATCATAAACCCTT
ATACTTCTTCAAACAGATCACAGTTGATTATACTTTATTGTTTTGAATTG
GTGTCAAATGCTTAAGATTCTCTCACATAATGGAATGCAGAGCTCCCTGT
GTTACTTTTTTGTTATTACAAATGACTTTAAAATGGCTATGCTTTTTATG
GGTAGTTTTATTGGACTTGTAGCCTGATTTGGTTTTGTTGAAAATTTCAA
GGTTCAGTTTATTAGTGCTTAAAGGTTATTTTATTATGCTATTAATCAAA
ATAGATCAATTAGTTTACCAAAAAGAAGTTAGTCTTCCCTTCTAGCGAAA
ACTATTGGTAGTATAAGTCTGCGAATCAAAGCGAGAAGTTTAATAAGTTA
TGTTCTCAACGTGTCTGATGCTATCTATCTATCATCTTTCTTTGACCACC
TTCATCGCGTAAACAATGTTTAGATGGGAACGACCTCACATTTTATTTGG
ACAACTGTTGGATTGGTTGCGTTATTTCATCGTATGGCTTCCAGTCATCA
TTCTCGTAACACGTGGTATTAATTACGAACTGGGGCTAGAATGAAATTGT
ACGGTCAAACCCAAATTTCAAAAAGGCTCAAAAATTCGATTTAGTCTCCC
AACGGATGAGATTTGTTCTTAACTGGAACGTTATAATACTGAAATCAAAC
AAATTTCTGACAATGAATTGGTAGAAAAAACTTTTCCGTTTGTTGCACGC
ACAAGTTCATCATTGCCAACAAAGTAATGTCTGTCATACAATAAAAGATG
TACCAATATGGTGAATTAGGGTTACAAGATTTTATACACAGAAAGATGAC
ATGGAACAAAACAATTTTACTTCACATCCTAGCAATAGGGATCTTGTCGC
TACAATTTTTACCTTTTTAACATCCATGTTTCATTATCCCTAGAAAAACG
ATAGGGCGACACTTCTGTAGACTGAATTTCTGGTATTGCATCTGAGATTT
GGAGGTTTATTGTATATTTTGAAAGTTTATTTTTAATGTTCAATCTCTGA
AGGGGCTTCACAGGGTCAAACTACTCAGCAAACATTGAGGTTTTTCAAAT
TCAGTGGATTTGATCGAAACGGATGAAACGTGGGTGTTCTTATTTTAGAT
AGGGTCTAAATTAGGAATTGAATAATTAGTTATTTTGAATAATTTTCGAA
ACGGTTCTGATTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTTTTGGGCCTGAATGGTTTAAGTGATTTTCGTATTTGG
GGAAATTCCTTTTTACCATTTTACATTATTCAACACACAAGCTTTATTTT
TCCATTCTGAATTTTTTTACAATTATTGTCACTTTTTTCTTATTTTCATC
TGATGTTAATCATTAGGTAGGTCCATTCAGCATGTTGCTTGTTTTTCTCA
AAAGTTTGTTTAACCGCTATGGATGATTTTATGGATTGTCGTTAACCCTT
TAAGTGCCGATGTCGTATATATACGACATGGGCTATATAGGAGGGCGAAG
CCCTCCTGTAATGCCCAGTTTGAGTTAGAAATCGTTATTTTTTGTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTAA
ACAATGTTTAGATGGGAACGACCTCACATTTTATTTGGACAACTGTTGGA
TTGGTTGCGTTATTTCATCGTATGGCTTCCAGTCATCATTCTCGTAACAC
GTGGTATTAATTACGAACTGGGGCTAGAATGAAATTGTACAGTCAAACCC
AAATTTCAAAAAGGCTCAAAAATTCGATTTAGTCTCCCAACGGATGAGAT
TTGTTCTTACATGGAACGTTATAATACTAAAATCAAACAAATTTCTGACA
ATGAATTGGTAGAAAAAACTTTTCCGTTTGTTGCACGCACAAGTTCATCA
TTGCCAACAAAGTAATGTCTGTCATACAATAAAAGATGTACCAATATGGT
GAATTAGGGTTACAAGATTTTATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010269XLOC_010269Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018286-exon-sc0000295-1575043694:141795..141827TCONS_00018286-exon-sc0000295-1575043694:141795..141827Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1575043694:141641..141708TCONS_00018286-exon-sc0000295-1575043694:141641..141708Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1575043694:140905..141046TCONS_00018286-exon-sc0000295-1575043694:140905..141046Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1575043694:140170..140324TCONS_00018286-exon-sc0000295-1575043694:140170..140324Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1575043694:138321..138549TCONS_00018286-exon-sc0000295-1575043694:138321..138549Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1575043694:137904..138046TCONS_00018286-exon-sc0000295-1575043694:137904..138046Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1575043694:135212..135313TCONS_00018286-exon-sc0000295-1575043694:135212..135313Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1575043694:131203..131566TCONS_00018286-exon-sc0000295-1575043694:131203..131566Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1510915933:141795..141827TCONS_00018286-exon-sc0000295-1510915933:141795..141827Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1510915933:141641..141708TCONS_00018286-exon-sc0000295-1510915933:141641..141708Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1510915933:140905..141046TCONS_00018286-exon-sc0000295-1510915933:140905..141046Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1510915933:140170..140324TCONS_00018286-exon-sc0000295-1510915933:140170..140324Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1510915933:138321..138549TCONS_00018286-exon-sc0000295-1510915933:138321..138549Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1510915933:137904..138046TCONS_00018286-exon-sc0000295-1510915933:137904..138046Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1510915933:135212..135313TCONS_00018286-exon-sc0000295-1510915933:135212..135313Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1510915933:131203..131566TCONS_00018286-exon-sc0000295-1510915933:131203..131566Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1491911889:141795..141827TCONS_00018286-exon-sc0000295-1491911889:141795..141827Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1491911889:141641..141708TCONS_00018286-exon-sc0000295-1491911889:141641..141708Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1491911889:140905..141046TCONS_00018286-exon-sc0000295-1491911889:140905..141046Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1491911889:140170..140324TCONS_00018286-exon-sc0000295-1491911889:140170..140324Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1491911889:138321..138549TCONS_00018286-exon-sc0000295-1491911889:138321..138549Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1491911889:137904..138046TCONS_00018286-exon-sc0000295-1491911889:137904..138046Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1491911889:135212..135313TCONS_00018286-exon-sc0000295-1491911889:135212..135313Clytia hemisphaericaexon
TCONS_00018286-exon-sc0000295-1491911889:131203..131566TCONS_00018286-exon-sc0000295-1491911889:131203..131566Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295supercontigsc0000295:131203..141827 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.8973e-07	0	0.066069	0	0.00297129	0.131336	0.140886	0.0682574	0.88238	1.85574	1.66714e-08	0.0498773	0	0	0	0	2.6215	0.876404	1.25719e-09	0	0	3.11403e-05	0	0	0.14317	0.000687185	1.95431	1.20139e-09	0	0.639881
Blast
[Close]
BLAST of TCONS_00018286 vs. Swiss-Prot (Human)
Match: RN121 (RING finger protein 121 OS=Homo sapiens GN=RNF121 PE=1 SV=1)

HSP 1 Score: 415.616 bits (1067), Expect = 2.169e-143
Identity = 189/315 (60.00%), Postives = 244/315 (77.46%), Query Frame = 1 
Query:   46 EQLLNNKSMRELTPEEKWRQDHEKLHAKHRGHEAMHLEMVLILFATLFVMQIVLFKWQQMHSRSYKMVTLIGMWVFPFIFTVRHGWYRMISVWSIFTIITLFVIWKATRFPVNPTTPRLVYKWFYNVHRVTYALGIIGYLIIMMTFMGFNVLLLIKPEFSMQAGVIIIFYGLYYGVLGRDCAELCADKMAAKMGYYSETGLPSKRLMPNICAVCGQELTLTAXXXXXXXXTEKSYKLSCGHLFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFKNPWERPHILFGQLLDWLRYFIVWLPVIILVTRGINYELGLE 990
            E+ L+   M +L+PEE+WR +H ++HAKHRGHEAMH EMVLIL ATL V Q++L +W+Q H RSY MVTL  MWV P  FTV+  W+R + +W +F+ +T FV ++ATR P+  TTPRLVYKWF  +++++YA GI+GY+ +M T  G N+L  IKPE +M  G+ ++FYGLYYGVL RD AE+CAD MA+ +G+YSE+G+P+K L  ++CAVCGQ++ +      EE   E +Y+LSC H+FHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF NPWERPH+++GQLLDWLRY + W PVII V +GINY LGLE
Sbjct:   16 ERELDEVDMSDLSPEEQWRVEHARMHAKHRGHEAMHAEMVLILIATLVVAQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWWRFLVIWILFSAVTAFVTFRATRKPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFTLFGLNLLFKIKPEDAMDFGISLLFYGLYYGVLERDFAEMCADYMASTIGFYSESGMPTKHLSDSVCAVCGQQIFVDV---SEEGIIENTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRYLVAWQPVIIGVVQGINYILGLE 327
The following BLAST results are available for this feature:
BLAST of TCONS_00018286 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1212.169e-14360.00RING finger protein 121 OS=Homo sapiens GN=RNF121 ... [more]
back to top