TCONS_00018296 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018296
Unique NameTCONS_00018296
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2530

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018296 ID=TCONS_00018296|Name=TCONS_00018296|organism=Clytia hemisphaerica|type=transcript|length=2530bp
ctcaatacaatcccacaatgcatcgctttttaagaaaaatcaaaaactcc
gataaagtCTATTGTTGAAAGAAGGCAATAAACATTTACCATTATTTGCA
GGTCTCCGTTTATTTAATGTGCAATTGATTCCATAATAGTCAGTAAAACA
TTCCTTTTCTCCCGTGATTTTGTTGCAGATGAAATTGCTCCCATCTTCAA
CTTTGCAGTATGTTGTACAGTTCATTCCGTAGTAATCAACAAAACATTCC
TTTTCACCAGTGATTTTGTTGCAGATGAAATTGCTTCCATCTTTGACTTT
GCAGTATGCTGTACAGTTCACTCCGTAATAATCAACAAAACATTCCTTTT
CACCGGTAATCTTGTTACAGATGAAATTGCTCCCATCTTCAACTTTGCAG
TATGTTGTACAGTTCACTCCGTAATAATCGACAAAACATTCCTTTTCACC
AGTAATCTTGTTGCAGATGAAATTGCTCCCATCTTTGACTTTGCAGTATG
TTGTACAATTAATTCCGTAGTAATCAACAAAACATTCCTTTTCTCCAGTA
ATCTTGTTGCAGATGAAATTGCTTCCTTCTTCGACTTTGCAGTATGTTGT
ACAGTTCACTCCGTAATAATCGGCAAAACATTCCTTTTCTCCAGTGATTT
TGTTGCAGATGAAATTGCTTCCATCTTCAACTTTGCAGTTTGTTGTACAA
TTCATTCCGTAATAATCAGCAAAACACTCCTTTGCTCCAGTGATTTTGTT
GCAGATGAAATTGCTTCCATCTTCAACTTTGCAGTATGTTGTACAATTCA
TTCCGTAATAATCAGCAAAACACTCCTTTTCTCCGGTGATTTTGTTGCAG
ATGAAATTGCTCCCCTCTTCAACTTTGCAGTATGTTGTACAGTTCACTCC
GTAATAATCGGCAAACATCCTTTTCTCCAGTGGTTTTGTTGCAGATGAAA
TTGCTTCCATCTTCAACTTTGCAGTTTGTTGTACAATTCATTCCGTAATA
ATCAGCAAAACACTCCTTTTCTCCAGTGATTTTGTTGCAGATGAAATTGC
TTCCATCTTCAACTTTGCAGTATGTTGTACAATTCATTCCGTAATAATCA
GCAAAACACTCCTTTTCTCCAGTGATTTTGTTGCAGATGAAATTGTTCCC
ATCTTTAACTTTGCAGTATGTTGTACAGTTCACTCCGTAATAATCGGCAA
AACATTCCTTCTCTCCCGTGATTTTGTTGCAGATGAAATTGCTCCCATCG
TCAACTTTGCAGTATGTTGTACAATTCATTCCGTAATAATCGGCAAAACA
CTCCTTTTCTCCAGTGATTCTGTTGCAGATGAAATTGCTCCCATCTTCAA
CTTTGCAGTATGTTGTACAGTTCACTCCGTAATAATCGGCAAACATCCTT
TTCTCCAGTGGTTTTGTTGCAGATGAAATTGCTTCCATCTTCAACTTTGC
AGTATGTTGTACAGTTCACTCCGTAATAATCGGCAAACATCCTTTTCTCC
AGTGGTTTTGTTGCAGATGAAATTGCTTCCATCTTCAACTTTGCAGTATG
TTGTACAGTTCACTCCGTAATAATCGGCAAACATCCTTTTCTCCAGTGGT
TTTGTTGCAGATGAAATTGCTTCCATCTTCAACTTTGCAGTATGTTGTAC
AGTTCACTCCGTAATAATCGGCAAACATCCTTTTCTCCAGTGGTTTTGTT
GCAGATGAAATTGCTTCCATCTTCAACTTTGCAGTATGTTGTACAGTTCA
CTCCGTAATAATCGGCAAACATCCTTTTCTCCAGTGGTTTTGTTGCAGAT
GAAATTGCTTCCATCTTCAACTTTGCAGTATGTTGTACAGTTCACTCCGT
AATAATCGGCAAAACATTCCTTTTCTCCAGTGATTTTGTTGCAGATGAAA
TTGCTCCCATCTTCAACATTGCAGTATGTTGTACAATTCATTCCGTAATA
ATCAGCAAAACACTCCTTTTCTCCAGTGATTTTGTTGCAGATGAAATTGC
TTCCATCTTCAACTTTGCAGTATGTTGTACAGTTCACTCCGTAATAATCG
GCAAAACATTCCTTCTCTCCCGTGATTTTGTTGCAGATGAAATTGTTCCC
ATCTTTAACTTTGCAGTATCTTGTACAGTTCACTCCGTAATAATCGGCAA
AACATTCCTTCTCTCCCGTGATTTTGTTGCAGATGAAATTGCTCCCATCT
TCAACTTTGCAGTATGTTGTACAATTCATTCCGTAATAATCAGCAAAACA
CTCCTTTTCTCCAGTGATTCTGTTGCAGATGAAATTGCTTCCATCTTCAA
CTTTGCAGTATGTTGTACAATTCATTCCGTAATAATCAGCAAAACACTCC
TTTTCTCCAGTAATTTTGTTGCAGATGAAATTGCTTCCATCTTCAACTTT
GCAATATGTTGTACAGTTCACTCCAAAGTAGTTCTCATAACATTGCTTTT
GGCCGGTGGTTTCATTGCAAAAGTAATGACCGTTTGGAATTTCTTTACAT
TCTGTGTCTTCAATTTGAAGTCCGTCCTAT
Run BLAST on NCBI

transcript from alignment at sc0000295:244649..247274-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018296 ID=TCONS_00018296|Name=TCONS_00018296|organism=Clytia hemisphaerica|type=transcript|length=2626bp|location=Sequence derived from alignment at sc0000295:244649..247274- (Clytia hemisphaerica)
CTCAATACAATCCCACAATGCATCGCTTTTTAAGAAAAATCAAAAACTCC
GATAAAGTCTATTGTTGAAAGAAGGCAATAAACATTTACCATTATTTGCA
GGTCTCCGTTTATTTAATGTGCAATTGATTCCATAATAGTCAGTAAAACA
TTCCTTTTCTCCCGTGATTTTGTTGCAGATGAAATTGCTCCCATCTTCAA
CTTTGCAGTATGTTGTACAGTTCATTCCGTAGTAATCAACAAAACATTCC
TTTTCACCAGTGATTTTGTTGCAGATGAAATTGCTTCCATCTTTGACTTT
GCAGTATGCTGTACAGTTCACTCCGTAATAATCAACAAAACATTCCTTTT
CACCAGTAATCAAGTTGCAGATGAAATTGCTCCCATCTTCAACTTTGCAG
TATGTTGTACAGTTCACTCCGTAATAATCAACAAAACATTCCTTTTCACC
GGTAATCTTGTTACAGATGAAATTGCTCCCATCTTCAACTTTGCAGTATG
TTGTACAGTTCACTCCGTAATAATCGACAAAACATTCCTTTTCACCAGTA
ATCTTGTTGCAGATGAAATTGCTCCCATCTTTGACTTTGCAGTATGTTGT
ACAATTAATTCCGTAGTAATCAACAAAACATTCCTTTTCTCCAGTAATCT
TGTTGCAGATGAAATTGCTTCCTTCTTCGACTTTGCAGTATGTTGTACAG
TTCACTCCGTAATAATCGGCAAAACATTCCTTTTCTCCAGTGATTTTGTT
GCAGATGAAATTGCTTCCATCTTCAACTTTGCAGTTTGTTGTACAATTCA
TTCCGTAATAATCAGCAAAACACTCCTTTGCTCCAGTGATTTTGTTGCAG
ATGAAATTGCTTCCATCTTCAACTTTGCAGTATGTTGTACAATTCATTCC
GTAATAATCAGCAAAACACTCCTTTTCTCCGGTGATTTTGTTGCAGATGA
AATTGCTCCCCTCTTCAACTTTGCAGTATGTTGTACAGTTCACTCCGTAA
TAATCGGCAAACATCCTTTTCTCCAGTGGTTTTGTTGCAGATGAAATTGC
TTCCATCTTCAACTTTGCAGTTTGTTGTACAATTCATTCCGTAATAATCA
GCAAAACACTCCTTTTCTCCAGTGATTTTGTTGCAGATGAAATTGCTTCC
ATCTTCAACTTTGCAGTATGTTGTACAATTCATTCCGTAATAATCAGCAA
AACACTCCTTTTCTCCAGTGATTTTGTTGCAGATGAAATTGTTCCCATCT
TTAACTTTGCAGTATGTTGTACAGTTCACTCCGTAATAATCGGCAAAACA
TTCCTTCTCTCCCGTGATTTTGTTGCAGATGAAATTGCTCCCATCGTCAA
CTTTGCAGTATGTTGTACAATTCATTCCGTAATAATCGGCAAAACACTCC
TTTTCTCCAGTGATTCTGTTGCAGATGAAATTGCTCCCATCTTCAACTTT
GCAGTATGTTGTACAGTTCACTCCGTAATAATCGGCAAACATCCTTTTCT
CCAGTGGTTTTGTTGCAGATGAAATTGCTTCCATCTTCAACTTTGCAGTA
TGTTGTACAGTTCACTCCGTAATAATCGGCAAACATCCTTTTCTCCAGTG
GTTTTGTTGCAGATGAAATTGCTTCCATCTTCAACTTTGCAGTATGTTGT
ACAGTTCACTCCGTAATAATCGGCAAACATCCTTTTCTCCAGTGGTTTTG
TTGCAGATGAAATTGCTTCCATCTTCAACTTTGCAGTATGTTGTACAGTT
CACTCCGTAATAATCGGCAAACATCCTTTTCTCCAGTGGTTTTGTTGCAG
ATGAAATTGCTTCCATCTTCAACTTTGCAGTATGTTGTACAGTTCACTCC
GTAATAATCGGCAAACATCCTTTTCTCCAGTGGTTTTGTTGCAGATGAAA
TTGCTTCCATCTTCAACTTTGCAGTATGTTGTACAGTTCACTCCGTAATA
ATCGGCAAAACATTCCTTTTCTCCAGTGATTTTGTTGCAGATGAAATTGC
TCCCATCTTCAACATTGCAGTATGTTGTACAATTCATTCCGTAATAATCA
GCAAAACACTCCTTTTCTCCAGTGATTTTGTTGCAGATGAAATTGCTTCC
ATCTTCAACTTTGCAGTATGTTGTACAGTTCACTCCGTAATAATCGGCAA
AACATTCCTTCTCTCCCGTGATTTTGTTGCAGATGAAATTGTTCCCATCT
TTAACTTTGCAGTATCTTGTACAGTTCACTCCGTAATAATCGGCAAAACA
TTCCTTCTCTCCCGTGATTTTGTTGCAGATGAAATTGCTCCCATCTTCAA
CTTTGCAGTATGTTGTACAATTCATTCCGTAATAATCAGCAAAACACTCC
TTTTCTCCAGTGATTCTGTTGCAGATGAAATTGCTTCCATCTTCAACTTT
GCAGTATGTTGTACAATTCATTCCGTAATAATCAGCAAAACACTCCTTTT
CTCCAGTAATTTTGTTGCAGATGAAATTGCTTCCATCTTCAACTTTGCAA
TATGTTGTACAGTTCACTCCAAAGTAGTTCTCATAACATTGCTTTTGGCC
GGTGGTTTCATTGCAAAAGTAATGACCGTTTGGAATTTCTTTACATTCTG
TGTCTTCAATTTGAAGTCCGTCCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010271XLOC_010271Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018296-exon-sc0000295-1575043694:246934..247274TCONS_00018296-exon-sc0000295-1575043694:246934..247274Clytia hemisphaericaexon
TCONS_00018296-exon-sc0000295-1575043694:244649..246837TCONS_00018296-exon-sc0000295-1575043694:244649..246837Clytia hemisphaericaexon
TCONS_00018296-exon-sc0000295-1510915933:246934..247274TCONS_00018296-exon-sc0000295-1510915933:246934..247274Clytia hemisphaericaexon
TCONS_00018296-exon-sc0000295-1510915933:244649..246837TCONS_00018296-exon-sc0000295-1510915933:244649..246837Clytia hemisphaericaexon
TCONS_00018296-exon-sc0000295-1491911889:246934..247274TCONS_00018296-exon-sc0000295-1491911889:246934..247274Clytia hemisphaericaexon
TCONS_00018296-exon-sc0000295-1491911889:244649..246837TCONS_00018296-exon-sc0000295-1491911889:244649..246837Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295supercontigsc0000295:244649..247274 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	1.90131e-07	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00018296 vs. Swiss-Prot (Human)
Match: MEG10 (Multiple epidermal growth factor-like domains protein 10 OS=Homo sapiens GN=MEGF10 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.838e-19
Identity = 70/325 (21.54%), Postives = 117/325 (36.00%), Query Frame = -2 
Query:  121 YGVNCTTYCKVEEGSNFICNKITGEKECFADY-------------YGMNCTTYCKVEDGSNFICNKITGA--------------KECFADYYGMNCTTNCKVEDGSNFICNKITGE-------------KECFADYYGVNCTTYCKVEEGSNFICNKITGEKECFVDYYGINCTTYCKVKDGSNFICNKITGEKECFVDYYGVNCTTYCKVEDGSNFICNKITGEKECFVDYYGVNCTAYCKVKD---GSNFICNKITG---------------------EKECFVDYYGMNCTTYCKVEDGSNFICNKITGEKECFTDYYGINC 903
            +G NC+  C+   G    C+  TG+  C   Y             YG+ C   C+  +G    C  ++GA              + C    YG+ C   C     +   C+ ++GE             + C   +YG  C   C  + G++  C+ +TG+  C   + GI+C+T C +                     YG+NC++ C  ++  + +C+ + G   C   ++GV+C+  C       G N  C  + G                     E  C    YG+NC   C         C+  TG   C   + G++C
Sbjct:  273 FGKNCSQECQCHNGG--TCDAATGQCHCSPGYTGERCQDECPVGTYGVLCAETCQCVNGGK--CYHVSGACLCEAGFAGERCEARLCPEGLYGIKCDKRCPCHLENTHSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGAD--CDSVTGKCTCAPGFKGIDCSTPCPLGT-------------------YGINCSSRCGCKN--DAVCSPVDGSCTCKAGWHGVDCSIRCPSGTWGFGCNLTCQCLNGGACNTLDGTCTCAPGWRGEKCELPCQDGTYGLNCAERCDCSHADG--CHPTTGHCRCLPGWSGVHC 568

HSP 2 Score: 47.3654 bits (111), Expect = 3.838e-19
Identity = 34/123 (27.64%), Postives = 54/123 (43.90%), Query Frame = -1 
Query:  923 EKECFADYYGVNCTTYCKVKDGNNFICNKITGEKECFADY-------------YGMNCTTYCKVEDGSNFICNKITGEKECFADY-------------YGMNCTTNCKVEDGSNFICNKTTGE 1213
               C  D++G +CT+ C+ K+G   +CN ITG   C A +             YG +C   C+ ++G+   C+ +TGE  C   Y             +G  C   C  ++G   +C+  TGE
Sbjct:  136 SSACDGDHWGPHCTSRCQCKNG--ALCNPITGACHCAAGFRGWRCEDRCEQGTYGNDCHQRCQCQNGA--TCDHVTGECRCPPGYTGAFCEDLCPPGKHGPQCEQRCPCQNGG--VCHHVTGE 252

HSP 3 Score: 60.8474 bits (146), Expect = 2.094e-18
Identity = 60/272 (22.06%), Postives = 107/272 (39.34%), Query Frame = -2 
Query:  121 YGVNCTTYCKVEEGS-----NFICNKITG------EKECFADYYGMNCTTYCKVEDGSNFICNKITGAKECFADYYGMNCTTNCKVEDGSNFICNKITGEKECFADYYGVNCTTYCKVEEGSNFICNKITGEKECFVDYYGINCTTYCKVKDGSNFICNKITGEKECFVDYYGVNCTTYCKVEDGSNFICNKITGEKECFVDYYGVNCTAYCKVKDGSNFICNKITGEKECFVDYYGMNCTTYCKVEDGSNFICNKITGEKECFTDYYGINC 903
            +G NC+  C  + G+     + IC    G      ++ C   +YG  C+  C     S+  C+ ITG  +C   + G               +CN++     C +  +G NC   C     +N  CN I    +C+  + G +C+                   + C   ++G NC   C   +G+   C+   GE +C   + G+ CT                   + C + +YG +C   C+ ++G++  C+ I+G+  C T + G +C
Sbjct:  577 WGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQRICSPGFYGHRCSQTCPQCVHSSGPCHHITGLCDCLPGFTGA--------------LCNEV-----CPSGRFGKNCAGICTCT--NNGTCNPIDRSCQCYPGWIGSDCS-------------------QPCPPAHWGPNCIHTCNCHNGA--FCSAYDGECKCTPGWTGLYCT-------------------QRCPLGFYGKDCALICQCQNGAD--CDHISGQCTCRTGFMGRHC 785

HSP 4 Score: 51.2174 bits (121), Expect = 2.094e-18
Identity = 63/280 (22.50%), Postives = 101/280 (36.07%), Query Frame = -1 
Query:  971 YGVNCTTYCKVEDGSNF-------ICNKT-TGEKDVCRLLRSELYNILQS*RWKQFHLQQNHWRKGCLPIITE*TVQHTAKLKMEAISSATKPLEKRMFAD------YYGVNCTTYCKVEDGSNFICNRITGEKECFADYYGMNCTTYCKVDD-----------GSNFICNKITGEKECFADYYGVNCTTYCKVKD---GNNFICNKITG---------------------EKECFADYYGMNCTTYCKVEDGSNFICNKITGEKECFADYYGMNCTTNC 1663
            YGV C   C+  +G          +C     GE+   RL    LY I    R    HL+  H    C P+  E                A KP    ++ +      +YG  C   C  ++G++  C+ +TG+  C   + G++C+T C +              ++ +C+ + G   C A ++GV+C+  C       G N  C  + G                     E  C    YG+NC   C         C+  TG   C   + G++C + C
Sbjct:  316 YGVLCAETCQCVNGGKCYHVSGACLCEAGFAGERCEARLCPEGLYGIKCDKRCP-CHLENTH---SCHPMSGE---------------CACKPGWSGLYCNETCSPGFYGEACQQICSCQNGAD--CDSVTGKCTCAPGFKGIDCSTPCPLGTYGINCSSRCGCKNDAVCSPVDGSCTCKAGWHGVDCSIRCPSGTWGFGCNLTCQCLNGGACNTLDGTCTCAPGWRGEKCELPCQDGTYGLNCAERCDCSHADG--CHPTTGHCRCLPGWSGVHCDSVC 572
The following BLAST results are available for this feature:
BLAST of TCONS_00018296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEG103.838e-1921.54Multiple epidermal growth factor-like domains prot... [more]
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