TCONS_00018299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018299
Unique NameTCONS_00018299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1031

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018299 ID=TCONS_00018299|Name=TCONS_00018299|organism=Clytia hemisphaerica|type=transcript|length=1031bp
GGATTTTCGGTCGGACTGCCGGGCGTTTACGCCAAAAGTTTCGTGAAGTT
TTAATATGAAGCTGATCGCCATTCTTTTACATTCAATCCACCGACAGGCA
GGAACTTCGTAGACCTGTATCAAAAATCTCCCAAGATTTTCACGATCCTT
CGTTCAATATAATCTAAAATGGGTCCAAAATTCGATCCCAATGCTATTTC
CTATGTTTGCTTGAGAGCTGTTGGTGGAGAAGTTGGTGCAACATCGGCAC
TTGCCCCCAAGATTGGTCCTCTTGGTTTGtCTCCAAAAAAAGTTGGTGAT
GACATCGCTAAAAACACTGCTGACTGGAAGGGTCTGAAAATCACTGTCAA
ACTAACTATCCAAAACAGACAAGCCAAAATTTCAGTTGTACCCAGTGCTG
CTTCTTTAATCATCAAAGCCTTGAAGGAACCACCACGAGACAGAAAGAAG
GTCAAGCATGTCAAACATGATGGAAACCTCACCATGGATAACATCTACGA
TATTGCTCGTGAAATGAGAGAACGATCGCTCGCCAAACAATTTTCAGGTA
CAGTCAAAGAAATCTTAGGAACTGCCCAAAGTGTTGGATGCACTATTGAT
GGAGATGACCCACATtcaattattgaaaaaatcaacGATGGTGAAATTGA
ATGCCCAgaTGCATGAAGCGAGAATATATGGTggtagaaaaacaaacaaa
tcttCTCCATTCTTTATTTATCCTTGACCCTGCTTGAACTAGAATTAGTC
CATCAAATATAAATTTGCTAATCTTTAGGTTTAATTCGGGTNTAGAATTA
GTCCATCAAATATAGATTTGCTAATCTTTAGGTTTAATTCGGGtgtgaaa
acaatgaaaagaaacttgttttattttttgaatagcaAATTCGGAAAAAA
ATCATGATAAATTTTTGCCTGTCGAAGGTTTACGCCCAGCCAGCACATTA
CAGGCacaattaaaaaatatcaattttggctaatagacttcttaaaaagg
attttaggactttttcgtaataataatttat
Run BLAST on NCBI

protein sequence of TCONS_00018299-protein

>TCONS_00018299-protein ID=TCONS_00018299-protein|Name=TCONS_00018299-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MGPKFDPNAISYVCLRAVGGEVGATSALAPKIGPLGLSPKKVGDDIAKNT
ADWKGLKITVKLTIQNRQAKISVVPSAASLIIKALKEPPRDRKKVKHVKH
DGNLTMDNIYDIAREMRERSLAKQFSGTVKEILGTAQSVGCTIDGDDPHS
IIEKINDGEIECPDA
Run BLAST on NCBI

transcript from alignment at sc0000295:260857..265155-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018299 ID=TCONS_00018299|Name=TCONS_00018299|organism=Clytia hemisphaerica|type=transcript|length=4299bp|location=Sequence derived from alignment at sc0000295:260857..265155- (Clytia hemisphaerica)
GGATTTTCGGTCGGACTGCCGGGCGTTTACGCCAAAAGTTTCGTGAAGTT
TTAATATGAAGCTGATCGCCATTCTTTTACATTCAATCCACCGACAGGCA
GGAACTTCGTAGACCTGTATCAAAAATCTCCCAAGATTTTCACGATCCTT
CGTTCAATATAATCTAAAATGGGTCCAAAATTCGATCCCAATGCTATTTC
CTATGGTAAGTCTGTTATTTTTTTGATTATCCTTCTCAAACCGAGCACAA
ATGAACATGAAATTTATGGTCTATTTTACCAGAAATGTTTGCAGAAAAGT
AGTATTGATTAGTCCAGGATCTGGAGCTCAACTACTTTTTGCCTTTGATA
ATCTGATAGTTGAAAAAGTAGAGATTTCCTATTGCAGTGGCATCAAATCA
GAAAGCAAAAATATCATCTGGAAGATTTATCATAGGGACAATTTTCTGAC
TAAGTATTTTTTCCTTCAGTTTGCTTGAGAGCTGTTGGTGGAGAAGTTGG
TGCAACATCGGCACTTGCCCCCAAGATTGGTCCTCTTGGTTTGGTAAGAT
ATTTTGAAGCCTATTTTTCTGATTGGACTATTCCAGAAATAATCTGTGTT
GCATTGGAAACAATTCAGTTAGGGGTCATTCNCTTCCAGAAATAATCTGT
GTTTCATTGGAAACAATTCAGTTAGGGGTCATTCATAAATCAATTTTAGG
TTAAAAAAACGTCAATTGACGTTTTTAAAGCTGTTCCACCCACCCATACC
TTTAAACATGTGTGTTTGGTTTAGGAACGCAAAAATTTGAAACCTAAAGT
AAAGTCCGAACCCGATCGAACAGCTATCGTTCGATTTTGTTCAGTAAAGT
TTGATGGTTTGATAACGAAAATCGGTTCGATAGGTTTCCGTTGGCACTGC
CTATTCTACTAATTAAAGTAAATGAGATAAGAAGAGGCAAAACCTTATAA
TCAACCAAAATTCATAACCTTTCGTCTAAAGCAAAAGATGTGCTTTTCTA
TCTTGCCACCATCTTGTTTTAGAATGAGAATTATTTTCGTGTCATTTGCG
AAGAAAAATAAATCTTGAGCACAAACTTTTTTAAACACTTTTTTACACCA
AAAAACAAATAACTTTCATAGACTTACCTTTCCCAAACATTGAAAAAGCC
CCTACTCATTAAAGTAAATGAGATAATATAAGGTAAAACCTTAAATTAAA
AAAAACACTTTTGAAATCTGCTTTTGTACACCCCTATAACAGACTTAAAA
TGGAAGGGCCTTTTACAACATCATCTATTCTGCATGTAGACTTTGCAACT
CGTGTGTGAAGTTTGTTTTAGGGCATTACAGGCCTTTGCCCATCGAGGAT
TCAATTATTTTACATGTTAGTCCCTGTATCCAGCTTGGTTACAATACAAC
AACATATAATAATAACATTAATAACAATAACATTTGATTGGCTGTATTTT
CTAATTCCATAAGGAATATCGGAAATTCAAACTCTTAGTAGCCCAAACCA
TGCTTAATTTTGTCATCAGTATTTAAAAAAAAGGATTTGAACAACACTGT
ATGGCCCAAACATTTTTGGGTTGTCTTTGGGCCAAAATAGTTCAACATTC
TTTTGGCCTGAATACTAATCAAAATTTTGGATTTTCGTCAAACCTGGCCT
GAGGTTCTGGACTTTTTCAACTTAGAAATCACCAAGTGGTCTGACAAGAT
TGTAGCCATAACATCTATGCTAGGATTTCTTCTTTTATAAAAGTGAATAC
ACGGTTTGGAGATCTTAAAATCTCTTGTGATGGAATTTACCATTTTTTTT
ATCCTTTTTAGTCTCCAAAAAAAGTTGGTGATGACATCGCTAAAAACACT
GCTGACTGGAAGGGTCTGAAAATCACTGTCAAACTAACTATCCAAAACAG
ACAAGCCAAAATTTCAGTTGTACCCAGTGCTGCTTCTTTAATCATCAAAG
CCTTGAAGGAACCACCACGAGACAGAAAGAAGGTCAAGCATGTCAAACAT
GATGGAAACCTCACCATGGATAACATCTACGATATTGCTCGTGAAATGAG
AGAACGATCGCTCGCCAAACAATTTTCAGGTACAGTCAAAGAAATCTTAG
GAACTGCCCAAAGTGTTGGATGCACTATTGATGGAGATGACCCACATTCA
ATTATTGAAAAAATCAACGATGGTGAAATTGAATGCCCAGTAAGTGTCAT
GTTTAGGTATGAGTTTAAATCCTTTGCAAAACCCAACCCTACGTCCACGG
CGTGCATTGGGGTCAACGTAGATGGAATCATCCCTCCCAGAGTTACAATA
AACATTGTCACTCGATGAGAAAGGTCCAGCTATCTATAAAAACTCAAAAA
GAACTCTGTTCATTCTGGTTCATTTACACAGCAAACTTTTCTCATCGAAA
CTGGGGGTTGGTCGTTTCCACCGGCAAACAGGGCTCTGGTACTTTTTTCT
TAGTTTATCATATTTCTTAGCTCAAGTTATAAAAGAATAGAATGTCTGAA
AGATCTATCCTATCAAGTGAAATTCATCATTCATAAGGCATACAAGCTTC
TGTGAGCATATTTTGTTAGAGAAACAATTTCCAAATATTTGTCACCTTTC
CCCTTGTATGCAGAGAACAAAAATGGGGTATCTTACATGGTGAGGCCTGT
TAGCACATAAGAACGTAAGAATACTTCAGATGGTGATAAAAGCATGAAAT
TTGGTACAGATGATCCTTAGAGGGTCTAAAACTGAATCATAAACAGTAAC
ACTAAATTTTGCCACCTGCCAGATGACGTCATCAGGTGGCTGGGCTAAAA
TTCATTTTTTGGAGGTTGAGAGTTTTGTGATGGTACGTCATCTCAAGCCT
TTAAAACCTTGTAATTTTGGAACAAATTGACCAAATTTCATGTTTTATAG
ATGAATTCGTATCAAAATTCATTGCTCTTTCTGATTCTGATGTTTAAATT
ATATTAAAAGCTCTAAATTCTACGGAATACTAAAACTTGGATTTTGCGGT
TTACATAGCAAATTAAGGCAGCATTTTTNAGGAATACTAAACTTGGATTT
ACATAGCAAATTAAGGCAGCGTTTTTCCTTCAGGAACACAGTGCAAAACC
AACTAATTTTTTTGGATGTTTTAAGCCTTCCTATGTCGTTTAGACCCAAG
AATTAGAAGGAACTTCAATTTTTGACATGGATTCGTGTATAAAACATCAA
ACTTGGTCATCTAGTTCCGTTATTACGGGATTTTAGGTTTTGCCTGGAAA
GGCTTATGAGGGCGTCATCACAAAACTTTCAATAGATGATATCAGCTTTC
CGAATTCTCCCTGAATGATTACCCATGATGCATTGCGCAAAAAATTTCAC
GGGCGATATTGACTTTCCGTGAATTTTTCGCGCATTGCATCATGGGTAAT
CATTCGGGGAAAATTTGAAAAGCCAATATTGTCTATTTCCATAACTTGAT
AGGAAGATTTTTAAGGCATGTTTTATACCTCAATTTTCATCAGCATTTCG
TGCTCTTTCCGCTGAAACCATCATATTTCGAATATTTAAAAAAAAATTTT
TGCCCAGCCACCTGATGACGTCATCTGGCAGGTGGCCAGGTAGGAAAATT
TGGTGTTACTGTTTAAAATCAAGTTTTAGACCCTCTAAGGATCATCCGTG
CCAAATTTAGTATTTTCGTGCTAACAGACATTACTATACAATATGCTTAC
TACATGCATACTAAATGAACGATTCCGCAGATAAGCATTAAAAATCCGAT
TTAAGTTTCTTCCTTTTCAGTACATTTATAGTTCTCTTATCATTTAGAAA
TTCCTAATGTTACCAAATTTGAGAGGCGAAAATCCAGTTTTACAGCTCAC
ATTAGTTGGTTGTCTGGGAGTATTTACAATGAGTACTCTACTGAAAGATA
TTAATGTTTTTTCTTTTTCTTTCAGGATGCATGAAGCGAGAATATATGGT
GGTAGAAAAACAAACAAATCTTCTCCATTCTTTATTTATCCTTGACCCTG
CTTGAACTAGAATTAGTCCATCAAATATAAATTTGCTAATCTTTAGGTTT
AATTCGGGTNTAGAATTAGTCCATCAAATATAGATTTGCTAATCTTTAGG
TTTAATTCGGGTGTGAAAACAATGAAAAGAAACTTGTTTTATTTTTTGAA
TAGCAAATTCGGAAAAAAATCATGATAAATTTTTGCCTGTCGAAGGTTTA
CGCCCAGCCAGCACATTACAGGCACAATTAAAAAATATCAATTTTGGCTA
ATAGACTTCTTAAAAAGGATTTTAGGACTTTTTCGTAATAATAATTTAT

Coding sequence (CDS) from alignment at sc0000295:260857..265155-

>TCONS_00018299 ID=TCONS_00018299|Name=TCONS_00018299|organism=Clytia hemisphaerica|type=CDS|length=1992bp|location=Sequence derived from alignment at sc0000295:260857..265155- (Clytia hemisphaerica)
GATGCATGATCTCCAAAAAAAGTTGGTGATGACATCGCTAAAAACACTGC
TGACTGGAAGGGTCTGAAAATCACTGTCAAACTAACTATCCAAAACAGAC
AAGCCAAAATTTCAGTTGTACCCAGTGCTGCTTCTTTAATCATCAAAGCC
TTGAAGGAACCACCACGAGACAGAAAGAAGGTCAAGCATGTCAAACATGA
TGGAAACCTCACCATGGATAACATCTACGATATTGCTCGTGAAATGAGAG
AACGATCGCTCGCCAAACAATTTTCAGGTACAGTCAAAGAAATCTTAGGA
ACTGCCCAAAGTGTTGGATGCACTATTGATGGAGATGACCCACATTCAAT
TATTGAAAAAATCAACGATGGTGAAATTGAATGCCCATTTGCTTGAGAGC
TGTTGGTGGAGAAGTTGGTGCAACATCGGCACTTGCCCCCAAGATTGGTC
CTCTTGGTTTGATGGGTCCAAAATTCGATCCCAATGCTATTTCCTATGGA
TGCATGATCTCCAAAAAAAGTTGGTGATGACATCGCTAAAAACACTGCTG
ACTGGAAGGGTCTGAAAATCACTGTCAAACTAACTATCCAAAACAGACAA
GCCAAAATTTCAGTTGTACCCAGTGCTGCTTCTTTAATCATCAAAGCCTT
GAAGGAACCACCACGAGACAGAAAGAAGGTCAAGCATGTCAAACATGATG
GAAACCTCACCATGGATAACATCTACGATATTGCTCGTGAAATGAGAGAA
CGATCGCTCGCCAAACAATTTTCAGGTACAGTCAAAGAAATCTTAGGAAC
TGCCCAAAGTGTTGGATGCACTATTGATGGAGATGACCCACATTCAATTA
TTGAAAAAATCAACGATGGTGAAATTGAATGCCCATTTGCTTGAGAGCTG
TTGGTGGAGAAGTTGGTGCAACATCGGCACTTGCCCCCAAGATTGGTCCT
CTTGGTTTGATGGGTCCAAAATTCGATCCCAATGCTATTTCCTATGGATG
CATGATCTCCAAAAAAAGTTGGTGATGACATCGCTAAAAACACTGCTGAC
TGGAAGGGTCTGAAAATCACTGTCAAACTAACTATCCAAAACAGACAAGC
CAAAATTTCAGTTGTACCCAGTGCTGCTTCTTTAATCATCAAAGCCTTGA
AGGAACCACCACGAGACAGAAAGAAGGTCAAGCATGTCAAACATGATGGA
AACCTCACCATGGATAACATCTACGATATTGCTCGTGAAATGAGAGAACG
ATCGCTCGCCAAACAATTTTCAGGTACAGTCAAAGAAATCTTAGGAACTG
CCCAAAGTGTTGGATGCACTATTGATGGAGATGACCCACATTCAATTATT
GAAAAAATCAACGATGGTGAAATTGAATGCCCATTTGCTTGAGAGCTGTT
GGTGGAGAAGTTGGTGCAACATCGGCACTTGCCCCCAAGATTGGTCCTCT
TGGTTTGATGGGTCCAAAATTCGATCCCAATGCTATTTCCTATGGATGCA
TGATCTCCAAAAAAAGTTGGTGATGACATCGCTAAAAACACTGCTGACTG
GAAGGGTCTGAAAATCACTGTCAAACTAACTATCCAAAACAGACAAGCCA
AAATTTCAGTTGTACCCAGTGCTGCTTCTTTAATCATCAAAGCCTTGAAG
GAACCACCACGAGACAGAAAGAAGGTCAAGCATGTCAAACATGATGGAAA
CCTCACCATGGATAACATCTACGATATTGCTCGTGAAATGAGAGAACGAT
CGCTCGCCAAACAATTTTCAGGTACAGTCAAAGAAATCTTAGGAACTGCC
CAAAGTGTTGGATGCACTATTGATGGAGATGACCCACATTCAATTATTGA
AAAAATCAACGATGGTGAAATTGAATGCCCATTTGCTTGAGAGCTGTTGG
TGGAGAAGTTGGTGCAACATCGGCACTTGCCCCCAAGATTGGTCCTCTTG
GTTTGATGGGTCCAAAATTCGATCCCAATGCTATTTCCTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010272XLOC_010272Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018299-exon-sc0000295-1575043694:264951..265155TCONS_00018299-exon-sc0000295-1575043694:264951..265155Clytia hemisphaericaexon
TCONS_00018299-exon-sc0000295-1575043694:264613..264686TCONS_00018299-exon-sc0000295-1575043694:264613..264686Clytia hemisphaericaexon
TCONS_00018299-exon-sc0000295-1575043694:262967..263344TCONS_00018299-exon-sc0000295-1575043694:262967..263344Clytia hemisphaericaexon
TCONS_00018299-exon-sc0000295-1575043694:260857..261230TCONS_00018299-exon-sc0000295-1575043694:260857..261230Clytia hemisphaericaexon
TCONS_00018299-exon-sc0000295-1510915933:264951..265155TCONS_00018299-exon-sc0000295-1510915933:264951..265155Clytia hemisphaericaexon
TCONS_00018299-exon-sc0000295-1510915933:264613..264686TCONS_00018299-exon-sc0000295-1510915933:264613..264686Clytia hemisphaericaexon
TCONS_00018299-exon-sc0000295-1510915933:262967..263344TCONS_00018299-exon-sc0000295-1510915933:262967..263344Clytia hemisphaericaexon
TCONS_00018299-exon-sc0000295-1510915933:260857..261230TCONS_00018299-exon-sc0000295-1510915933:260857..261230Clytia hemisphaericaexon
TCONS_00018299-exon-sc0000295-1491911889:264951..265155TCONS_00018299-exon-sc0000295-1491911889:264951..265155Clytia hemisphaericaexon
TCONS_00018299-exon-sc0000295-1491911889:264613..264686TCONS_00018299-exon-sc0000295-1491911889:264613..264686Clytia hemisphaericaexon
TCONS_00018299-exon-sc0000295-1491911889:262967..263344TCONS_00018299-exon-sc0000295-1491911889:262967..263344Clytia hemisphaericaexon
TCONS_00018299-exon-sc0000295-1491911889:260857..261230TCONS_00018299-exon-sc0000295-1491911889:260857..261230Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018299-proteinTCONS_00018299-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295supercontigsc0000295:260857..265155 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
799.026	801.146	859.397	903.035	800.189	664.516	890.493	952.423	1370.03	1178.12	1461.19	1713.55	2373.58	2351.98	2164.31	2106.45	2107.44	2189.98	1238.91	1377.66	2019.01	1976.24	1414.63	1408.61	1484.29	1588.68	2094.72	2173.58	1223.77	1305.59
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000911Ribosomal_L11/L12
IPR020784Ribosomal_L11_N
IPR020783Ribosomal_L11_C
IPR020785Ribosomal_L11_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
[Close]
BLAST of TCONS_00018299 vs. Swiss-Prot (Human)
Match: RL12 (60S ribosomal protein L12 OS=Homo sapiens GN=RPL12 PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 4.767e-85
Identity = 124/163 (76.07%), Postives = 139/163 (85.28%), Query Frame = 1 
Query:  169 MGPKFDPNAISYVCLRAVGGEVGATSALAPKIGPLGLSPKKVGDDIAKNTADWKGLKITVKLTIQNRQAKISVVPSAASLIIKALKEPPRDRKKVKHVKHDGNLTMDNIYDIAREMRERSLAKQFSGTVKEILGTAQSVGCTIDGDDPHSIIEKINDGEIECP 657
            M PKFDPN I  V LR  GGEVGATSALAPKIGPLGLSPKKVGDDIAK T DWKGL+ITVKLTIQNRQA+I VVPSA++LIIKALKEPPRDRKK K++KH GN+T D I +IAR+MR RSLA++ SGT+KEILGTAQSVGC +DG  PH II+ IN G +ECP
Sbjct:    1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163
The following BLAST results are available for this feature:
BLAST of TCONS_00018299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL124.767e-8576.0760S ribosomal protein L12 OS=Homo sapiens GN=RPL12... [more]
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