TCONS_00018313 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018313
Unique NameTCONS_00018313
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018313 ID=TCONS_00018313|Name=TCONS_00018313|organism=Clytia hemisphaerica|type=transcript|length=567bp
CAGAAACATTCTTCTTCGCTCAGCGGATCAATTAGAATATTGTTTAAGTC
AGCATCATTTCGATACACCAACATGTTATAATGTTATTACGTTCGAATTC
GTATCCAATCCATGCCAGTTCCACGCGAGACAACACCGTATCACCGTTCG
TTTGTATatcgtgatttttttttcttcaagaatCCAAGAATTGTTTAGGT
TGTATTTCTAACCAATTTCCACCATCGAGAGCTCGGCGTTGATTTTCTCG
AGTAAAATCTTCTTTGAACATATGTTTAAATAACACGTCAGCTTATGGAA
CGTCTTCTAACATTTTCTCAAAACCATTTCGAGTCATTTATATTCGAACT
CGCAGATAGCGTGATGTGTAACTCaatctttcaaattcattttttttgta
caaCACGAACTCCTTGCGTGAGATTTATTTTCGCGGCGCCCAAGAAACAG
TAGATTTTCAACGGTCATttaaaaataacagacaaagttCTCTGAAGAAC
CATGAACGACTATCAGATATGATATAAAAACCAAGAAATAAAATCTCAGT
GAAATATAGTATGCAGG
Run BLAST on NCBI

transcript from alignment at sc0000295:51135..51701

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018313 ID=TCONS_00018313|Name=TCONS_00018313|organism=Clytia hemisphaerica|type=transcript|length=567bp|location=Sequence derived from alignment at sc0000295:51135..51701 (Clytia hemisphaerica)
CCTGCATACTATATTTCACTGAGATTTTATTTCTTGGTTTTTATATCATA
TCTGATAGTCGTTCATGGTTCTTCAGAGaactttgtctgttatttttaaA
TGACCGTTGAAAATCTACTGTTTCTTGGGCGCCGCGAAAATAAATCTCAC
GCAAGGAGTTCGTGttgtacaaaaaaaatgaatttgaaagattGAGTTAC
ACATCACGCTATCTGCGAGTTCGAATATAAATGACTCGAAATGGTTTTGA
GAAAATGTTAGAAGACGTTCCATAAGCTGACGTGTTATTTAAACATATGT
TCAAAGAAGATTTTACTCGAGAAAATCAACGCCGAGCTCTCGATGGTGGA
AATTGGTTAGAAATACAACCTAAACAATTCTTGGattcttgaagaaaaaa
aaatcacgatATACAAACGAACGGTGATACGGTGTTGTCTCGCGTGGAAC
TGGCATGGATTGGATACGAATTCGAACGTAATAACATTATAACATGTTGG
TGTATCGAAATGATGCTGACTTAAACAATATTCTAATTGATCCGCTGAGC
GAAGAAGAATGTTTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010279XLOC_010279Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018313-exon-sc0000295-1491911889:51135..51701TCONS_00018313-exon-sc0000295-1491911889:51135..51701Clytia hemisphaericaexon
TCONS_00018313-exon-sc0000295-1510915933:51135..51701TCONS_00018313-exon-sc0000295-1510915933:51135..51701Clytia hemisphaericaexon
TCONS_00018313-exon-sc0000295-1575043694:51135..51701TCONS_00018313-exon-sc0000295-1575043694:51135..51701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295supercontigsc0000295:51135..51701 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.10344	0	0	0	0	0.0562722	0.120777	6.91863	4.95634	0	0.220473	6.99452	5.32783	1.36351	2.68586	3.51117	4.46306	0.815313	0.290041	2.96981	3.47403
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018313 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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