TCONS_00018314 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018314
Unique NameTCONS_00018314
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length413

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018314 ID=TCONS_00018314|Name=TCONS_00018314|organism=Clytia hemisphaerica|type=transcript|length=413bp
GTAAATGAGTCATGAAATTCCGGTCTTTTACAGTTGTTATCCGCATAAAA
GCTTTCGTCATGAATATCAGTAACATTATTTGAGTGTTCAGTCAGTCATC
ATCAAACTTAGCCATCGTCTGGTTTCGGTGAATCACCGAATACAAGTATA
CGTCGAATTTACAGAGTGTACCATAAAAATCTCCAAGGTTTcatatttat
tgaatttattgTTTTCGGGCATTTTTATGAGACACCCTGTATCACTAGAa
actcaacttttttttcgtctTGAATTTACAAAATATCCTCCAAAATTTCG
AAGAtctaaatacacgctttttgtataagaaaacacatttcttataaaaa
gttcgTATCAATGTAAAGTAAGTTGAAAATTTATGAAAGATCGTCTGGGA
CCATTGCATTTCC
Run BLAST on NCBI

transcript from alignment at sc0000295:51871..52283

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018314 ID=TCONS_00018314|Name=TCONS_00018314|organism=Clytia hemisphaerica|type=transcript|length=413bp|location=Sequence derived from alignment at sc0000295:51871..52283 (Clytia hemisphaerica)
GGAAATGCAATGGTCCCAGACGATCTTTCATAAATTTTCAACTTACTTTA
CATTGATAcgaactttttataagaaatgtgttttcttatacaaaaagcgt
gtatttagaTCTTCGAAATTTTGGAGGATATTTTGTAAATTCAagacgaa
aaaaaagttgagttTCTAGTGATACAGGGTGTCTCATAAAAATGCCCGAA
AAcaataaattcaataaatatgAAACCTTGGAGATTTTTATGGTACACTC
TGTAAATTCGACGTATACTTGTATTCGGTGATTCACCGAAACCAGACGAT
GGCTAAGTTTGATGATGACTGACTGAACACTCAAATAATGTTACTGATAT
TCATGACGAAAGCTTTTATGCGGATAACAACTGTAAAAGACCGGAATTTC
ATGACTCATTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010280XLOC_010280Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018314-exon-sc0000295-1491911889:51871..52283TCONS_00018314-exon-sc0000295-1491911889:51871..52283Clytia hemisphaericaexon
TCONS_00018314-exon-sc0000295-1510915933:51871..52283TCONS_00018314-exon-sc0000295-1510915933:51871..52283Clytia hemisphaericaexon
TCONS_00018314-exon-sc0000295-1575043694:51871..52283TCONS_00018314-exon-sc0000295-1575043694:51871..52283Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295supercontigsc0000295:51871..52283 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.469056	0	0.223589	0	0	0	0	0	0.231325	0	0	0	15.1443	10.5713	0	0.386908	9.24806	8.85773	2.39283	2.71929	3.92112	8.33216	0.476932	0.254497	3.28146	5.50659
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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