|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018319 ID=TCONS_00018319|Name=TCONS_00018319|organism=Clytia hemisphaerica|type=transcript|length=2004bp
ttagaataaaaatatCTCAACAAAATCTTGGTGAAGAAGTGATGAAGAAT
CTAGccaacattattttcaaatatgaCAGAAATCGAATTTTATTTGGTTG
TATTGGTTTGTTATGCATGTTGGTGGTAACAGTCATGTTTAAACAATATG
CCACATTAAtgacaaactcgccaattaacCGGACAAGTAAACCGAATCTA
CGCAGAAACCAATACATGTATAACAAGAACATGGAGAAATTTCATGAAAT
GGATTCGCATTCTATTCAATTGGCTCTCCAACAAATATCACGTGCTCAAC
GATTCGAACGACGTCACAACTTCTCGGAAACGTTGTCCAAATTAAGTCAA
CGTCTGATAAATCTGCACTGTGGAAATCCAGCTGGTAAAAATCCAAGACA
GCGAACCACTATCATTCTCAATGCAGTAAACGAAATCAAAAATCTACAAT
ATTTGCTGTATGAGATAGAGAAGTTTCCAAAATGGACAAAGTCAAGTAAA
ATATTACTTGGATTGACTCAAAAATCAGCAATGAAACACATGACAAAGAT
TTTGACGCTCACACAAAAACTACCTGGATTTAAATTGAGTATTCTTCCAT
CGTCATCCGATATCGGGTCCACTTTGAAATCGTTACTTGATCAATCCCGT
ACTAAATACGTACTAGTAACCAAATCACTTAGAAAATTAGACAAGGATTT
TATTTTAGAGACTTTCTTAAGACCTCTGATGCAACGTACCGCAGACGTAG
TCACAGGGTCCCTCGTGTCCCCAACTGGAGAATGGGAGCCTGGATGTTAT
CAGTCGAAGTTAATTTGGAGTCAGTACAAAACACAGCACGGTAGTGATAC
GGTGGACGATCGTGGTTGGACATTCTGTGATCAAATAGACGGACCCTTCG
CTATGAACAGAAAAGTGCTCCGTAGACTTTTGGATACGCCTAATGATCTT
TTGTACATCGAAATCATGTACACTTTGAAGAacgagaaaaaaatcatcaa
atctcATTTACCAAGTAGTTTTCATGTTGAGGATTCTGGAAATTTCCATT
ACAAATTGGAACGTCCTCAATGGAAACAATTCATCCTTCGAAATCAAATT
ACTGAAGTCATAACTACAACAcgtgatcaaaacaaacattttgaGTTCGA
TTATAAAGAAGCGAAAAGTGAATGTAAGAGATGGCGTCAAACCAAAAACA
TGTTAAGACCAAGAGCTTGTATGAGAGACCTTCATTTCATGTTATTAAAT
TCATATCGTATTTTCGATAAACATGGATATGAATACCAAACGGACGATGG
ATCCTGCGTTGCTGGCACCAAACTACAAGACACCTTACCCTGGGATCATG
ATCACGATATGGCTTTTCGTACGCAAAATTTCTCACACTTAATGAAACAA
CAGGGCGAGTTCAAGAAATTAGAAATGTCACTGGAGCCGGAGTTGAATAA
TCCATGTTTTAAAGATATTGATAAGGCCACGTGGTGGGGATGTGCTTATG
TTGGTATCagaggggaaaattttcgtttaGAGAGTTGGGGACAGTATGTT
CTAATGGGTGATTAttaccagccttggaaaatccACCCTCATTTTAGACC
AATGTTCACACCGAAGAATCGTATCTTTGGTCACGATACCAAGGTTCTGT
TAGGTGATCATTGGTCGCAAATGCGTCAAAACCCTGGACAGTATATCCGT
GCTAAGTATGGTGTTGATGTATTGAAACATGCCAAGCATTGGCAAGATCT
CGGCCTGAAAAACATGATGGGGACTTACAAGACAGCCACGCATTTTGAAT
CGTGCCCTAAAGAAGGACACCATAATTGTTTGAATCAGTATCTTGCTGAT
GGAAACATTCAATTCCAACGTCCCTGGGCATAGAATTGGTTTGCAACGAA
CCAGATGTTTTCTCAGATTCTATTAGTATTTCTTGTAAATTTTCTACATT
CtagcttttttttcaaaaatttttatactATAGATCATTTTCAAAGTTCC
ACAA Run BLAST on NCBI protein sequence of Putative cnidarian restricted secreted protein >TCONS_00018319-protein ID=TCONS_00018319-protein|Name=Putative cnidarian restricted secreted protein|organism=Clytia hemisphaerica|type=polypeptide|length=626bp
RIKISQQNLGEEVMKNLANIIFKYDRNRILFGCIGLLCMLVVTVMFKQYA
TLMTNSPINRTSKPNLRRNQYMYNKNMEKFHEMDSHSIQLALQQISRAQR
FERRHNFSETLSKLSQRLINLHCGNPAGKNPRQRTTIILNAVNEIKNLQY
LLYEIEKFPKWTKSSKILLGLTQKSAMKHMTKILTLTQKLPGFKLSILPS
SSDIGSTLKSLLDQSRTKYVLVTKSLRKLDKDFILETFLRPLMQRTADVV
TGSLVSPTGEWEPGCYQSKLIWSQYKTQHGSDTVDDRGWTFCDQIDGPFA
MNRKVLRRLLDTPNDLLYIEIMYTLKNEKKIIKSHLPSSFHVEDSGNFHY
KLERPQWKQFILRNQITEVITTTRDQNKHFEFDYKEAKSECKRWRQTKNM
LRPRACMRDLHFMLLNSYRIFDKHGYEYQTDDGSCVAGTKLQDTLPWDHD
HDMAFRTQNFSHLMKQQGEFKKLEMSLEPELNNPCFKDIDKATWWGCAYV
GIRGENFRLESWGQYVLMGDYYQPWKIHPHFRPMFTPKNRIFGHDTKVLL
GDHWSQMRQNPGQYIRAKYGVDVLKHAKHWQDLGLKNMMGTYKTATHFES
CPKEGHHNCLNQYLADGNIQFQRPWA Run BLAST on NCBI transcript from alignment at sc0000295:193842..195845 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018319 ID=TCONS_00018319|Name=TCONS_00018319|organism=Clytia hemisphaerica|type=transcript|length=2004bp|location=Sequence derived from alignment at sc0000295:193842..195845 (Clytia hemisphaerica)
TTGTGGAACTTTGAAAATGATCTATagtataaaaatttttgaaaaaaaag
ctaGAATGTAGAAAATTTACAAGAAATACTAATAGAATCTGAGAAAACAT
CTGGTTCGTTGCAAACCAATTCTATGCCCAGGGACGTTGGAATTGAATGT
TTCCATCAGCAAGATACTGATTCAAACAATTATGGTGTCCTTCTTTAGGG
CACGATTCAAAATGCGTGGCTGTCTTGTAAGTCCCCATCATGTTTTTCAG
GCCGAGATCTTGCCAATGCTTGGCATGTTTCAATACATCAACACCATACT
TAGCACGGATATACTGTCCAGGGTTTTGACGCATTTGCGACCAATGATCA
CCTAACAGAACCTTGGTATCGTGACCAAAGATACGATTCTTCGGTGTGAA
CATTGGTCTAAAATGAGGGTggattttccaaggctggtaaTAATCACCCA
TTAGAACATACTGTCCCCAACTCTCtaaacgaaaattttcccctctGATA
CCAACATAAGCACATCCCCACCACGTGGCCTTATCAATATCTTTAAAACA
TGGATTATTCAACTCCGGCTCCAGTGACATTTCTAATTTCTTGAACTCGC
CCTGTTGTTTCATTAAGTGTGAGAAATTTTGCGTACGAAAAGCCATATCG
TGATCATGATCCCAGGGTAAGGTGTCTTGTAGTTTGGTGCCAGCAACGCA
GGATCCATCGTCCGTTTGGTATTCATATCCATGTTTATCGAAAATACGAT
ATGAATTTAATAACATGAAATGAAGGTCTCTCATACAAGCTCTTGGTCTT
AACATGTTTTTGGTTTGACGCCATCTCTTACATTCACTTTTCGCTTCTTT
ATAATCGAACtcaaaatgtttgttttgatcacgTGTTGTAGTTATGACTT
CAGTAATTTGATTTCGAAGGATGAATTGTTTCCATTGAGGACGTTCCAAT
TTGTAATGGAAATTTCCAGAATCCTCAACATGAAAACTACTTGGTAAATg
agatttgatgatttttttctcgtTCTTCAAAGTGTACATGATTTCGATGT
ACAAAAGATCATTAGGCGTATCCAAAAGTCTACGGAGCACTTTTCTGTTC
ATAGCGAAGGGTCCGTCTATTTGATCACAGAATGTCCAACCACGATCGTC
CACCGTATCACTACCGTGCTGTGTTTTGTACTGACTCCAAATTAACTTCG
ACTGATAACATCCAGGCTCCCATTCTCCAGTTGGGGACACGAGGGACCCT
GTGACTACGTCTGCGGTACGTTGCATCAGAGGTCTTAAGAAAGTCTCTAA
AATAAAATCCTTGTCTAATTTTCTAAGTGATTTGGTTACTAGTACGTATT
TAGTACGGGATTGATCAAGTAACGATTTCAAAGTGGACCCGATATCGGAT
GACGATGGAAGAATACTCAATTTAAATCCAGGTAGTTTTTGTGTGAGCGT
CAAAATCTTTGTCATGTGTTTCATTGCTGATTTTTGAGTCAATCCAAGTA
ATATTTTACTTGACTTTGTCCATTTTGGAAACTTCTCTATCTCATACAGC
AAATATTGTAGATTTTTGATTTCGTTTACTGCATTGAGAATGATAGTGGT
TCGCTGTCTTGGATTTTTACCAGCTGGATTTCCACAGTGCAGATTTATCA
GACGTTGACTTAATTTGGACAACGTTTCCGAGAAGTTGTGACGTCGTTCG
AATCGTTGAGCACGTGATATTTGTTGGAGAGCCAATTGAATAGAATGCGA
ATCCATTTCATGAAATTTCTCCATGTTCTTGTTATACATGTATTGGTTTC
TGCGTAGATTCGGTTTACTTGTCCGgttaattggcgagtttgtcaTTAAT
GTGGCATATTGTTTAAACATGACTGTTACCACCAACATGCATAACAAACC
AATACAACCAAATAAAATTCGATTTCTGtcatatttgaaaataatgttgg
CTAGATTCTTCATCACTTCTTCACCAAGATTTTGTTGAGatatttttatt
ctaa Coding sequence (CDS) from alignment at sc0000295:193842..195845 >TCONS_00018319 ID=TCONS_00018319|Name=TCONS_00018319|organism=Clytia hemisphaerica|type=CDS|length=1881bp|location=Sequence derived from alignment at sc0000295:193842..195845 (Clytia hemisphaerica)
CTATGCCCAGGGACGTTGGAATTGAATGTTTCCATCAGCAAGATACTGAT
TCAAACAATTATGGTGTCCTTCTTTAGGGCACGATTCAAAATGCGTGGCT
GTCTTGTAAGTCCCCATCATGTTTTTCAGGCCGAGATCTTGCCAATGCTT
GGCATGTTTCAATACATCAACACCATACTTAGCACGGATATACTGTCCAG
GGTTTTGACGCATTTGCGACCAATGATCACCTAACAGAACCTTGGTATCG
TGACCAAAGATACGATTCTTCGGTGTGAACATTGGTCTAAAATGAGGGTg
gattttccaaggctggtaaTAATCACCCATTAGAACATACTGTCCCCAAC
TCTCtaaacgaaaattttcccctctGATACCAACATAAGCACATCCCCAC
CACGTGGCCTTATCAATATCTTTAAAACATGGATTATTCAACTCCGGCTC
CAGTGACATTTCTAATTTCTTGAACTCGCCCTGTTGTTTCATTAAGTGTG
AGAAATTTTGCGTACGAAAAGCCATATCGTGATCATGATCCCAGGGTAAG
GTGTCTTGTAGTTTGGTGCCAGCAACGCAGGATCCATCGTCCGTTTGGTA
TTCATATCCATGTTTATCGAAAATACGATATGAATTTAATAACATGAAAT
GAAGGTCTCTCATACAAGCTCTTGGTCTTAACATGTTTTTGGTTTGACGC
CATCTCTTACATTCACTTTTCGCTTCTTTATAATCGAACtcaaaatgttt
gttttgatcacgTGTTGTAGTTATGACTTCAGTAATTTGATTTCGAAGGA
TGAATTGTTTCCATTGAGGACGTTCCAATTTGTAATGGAAATTTCCAGAA
TCCTCAACATGAAAACTACTTGGTAAATgagatttgatgatttttttctc
gtTCTTCAAAGTGTACATGATTTCGATGTACAAAAGATCATTAGGCGTAT
CCAAAAGTCTACGGAGCACTTTTCTGTTCATAGCGAAGGGTCCGTCTATT
TGATCACAGAATGTCCAACCACGATCGTCCACCGTATCACTACCGTGCTG
TGTTTTGTACTGACTCCAAATTAACTTCGACTGATAACATCCAGGCTCCC
ATTCTCCAGTTGGGGACACGAGGGACCCTGTGACTACGTCTGCGGTACGT
TGCATCAGAGGTCTTAAGAAAGTCTCTAAAATAAAATCCTTGTCTAATTT
TCTAAGTGATTTGGTTACTAGTACGTATTTAGTACGGGATTGATCAAGTA
ACGATTTCAAAGTGGACCCGATATCGGATGACGATGGAAGAATACTCAAT
TTAAATCCAGGTAGTTTTTGTGTGAGCGTCAAAATCTTTGTCATGTGTTT
CATTGCTGATTTTTGAGTCAATCCAAGTAATATTTTACTTGACTTTGTCC
ATTTTGGAAACTTCTCTATCTCATACAGCAAATATTGTAGATTTTTGATT
TCGTTTACTGCATTGAGAATGATAGTGGTTCGCTGTCTTGGATTTTTACC
AGCTGGATTTCCACAGTGCAGATTTATCAGACGTTGACTTAATTTGGACA
ACGTTTCCGAGAAGTTGTGACGTCGTTCGAATCGTTGAGCACGTGATATT
TGTTGGAGAGCCAATTGAATAGAATGCGAATCCATTTCATGAAATTTCTC
CATGTTCTTGTTATACATGTATTGGTTTCTGCGTAGATTCGGTTTACTTG
TCCGgttaattggcgagtttgtcaTTAATGTGGCATATTGTTTAAACATG
ACTGTTACCACCAACATGCATAACAAACCAATACAACCAAATAAAATTCG
ATTTCTGtcatatttgaaaataatgttggCTAGATTCTTCATCACTTCTT
CACCAAGATTTTGTTGAGatatttttattct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018319-exon-sc0000295-1491911889:193842..195845 | TCONS_00018319-exon-sc0000295-1491911889:193842..195845 | Clytia hemisphaerica | exon |
| TCONS_00018319-exon-sc0000295-1510915933:193842..195845 | TCONS_00018319-exon-sc0000295-1510915933:193842..195845 | Clytia hemisphaerica | exon |
| TCONS_00018319-exon-sc0000295-1575043694:193842..195845 | TCONS_00018319-exon-sc0000295-1575043694:193842..195845 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000295 | supercontig | sc0000295:193842..195845 . |
Blast
The following BLAST results are available for this feature:
|
