TCONS_00018322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018322
Unique NameTCONS_00018322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length425

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018322 ID=TCONS_00018322|Name=TCONS_00018322|organism=Clytia hemisphaerica|type=transcript|length=425bp
TAACTCTTGATCAAATCAAAGATCGGGTTCGTCATCTGATAACCCCAGGA
TCTGCTGGTGGTTATAGAACGATCTGGCATTCCCTTCAAATTAGTGGAGT
TAGAGTACCACGTTAActtgaaagtgaaattttgaaattattgatcGCAA
TATTGTAAGTTTGAGAGCTTTTTCGTGGAGAAGCCTTTTTACAGAACTAG
AATGATGGAGCAGAGGTACTCCAACGTGatttggatgaagtttgatttcA
CTTTATTGAACACTCGTATTCAAAAAAGTGCTTTATAAATGACTGCTTGG
CGTACTGATTCCCTTTACTACTTGCCTAAATTGGCCGGGTCAGAAGATCG
GAAACAAGTAGTTCAAGAACCTTTTAGGATGTTTCCGAAAACGTTGTAGT
GAGAGACTATCGAAACGAATACTTG
Run BLAST on NCBI

transcript from alignment at sc0000295:257128..257552

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018322 ID=TCONS_00018322|Name=TCONS_00018322|organism=Clytia hemisphaerica|type=transcript|length=425bp|location=Sequence derived from alignment at sc0000295:257128..257552 (Clytia hemisphaerica)
CAAGTATTCGTTTCGATAGTCTCTCACTACAACGTTTTCGGAAACATCCT
AAAAGGTTCTTGAACTACTTGTTTCCGATCTTCTGACCCGGCCAATTTAG
GCAAGTAGTAAAGGGAATCAGTACGCCAAGCAGTCATTTATAAAGCACTT
TTTTGAATACGAGTGTTCAATAAAGTgaaatcaaacttcatccaaatCAC
GTTGGAGTACCTCTGCTCCATCATTCTAGTTCTGTAAAAAGGCTTCTCCA
CGAAAAAGCTCTCAAACTTACAATATTGCgatcaataatttcaaaatttc
actttcaagTTAACGTGGTACTCTAACTCCACTAATTTGAAGGGAATGCC
AGATCGTTCTATAACCACCAGCAGATCCTGGGGTTATCAGATGACGAACC
CGATCTTTGATTTGATCAAGAGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010288XLOC_010288Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018322-exon-sc0000295-1491911889:257128..257552TCONS_00018322-exon-sc0000295-1491911889:257128..257552Clytia hemisphaericaexon
TCONS_00018322-exon-sc0000295-1510915933:257128..257552TCONS_00018322-exon-sc0000295-1510915933:257128..257552Clytia hemisphaericaexon
TCONS_00018322-exon-sc0000295-1575043694:257128..257552TCONS_00018322-exon-sc0000295-1575043694:257128..257552Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295supercontigsc0000295:257128..257552 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.164249	0	0	0	2.21499	0.875156	1.47817	0.988463	0.830456	0.685769	0.166406	2.29716	0.436947	0.453774	0	0	0	0	0	0	0	0	0	0	0.705387	0.472156	0.225218	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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