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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018323 ID=TCONS_00018323|Name=TCONS_00018323|organism=Clytia hemisphaerica|type=transcript|length=820bp
AAAATACATACAAGTATATAAATCGCTCAGGGAGTATAGACGTAGCGTTT
TGGGAATTAAATTTTAATTACCAAAGCCCTACTTCTATACTCGTCTTTTG
TCATAAGAGATGGCTTATGCTCATTAATCATTAATGCCTCAAGGGCCATT
AAATAAAATGTTGAACGTGACGTATTACAAAGAATTGATACGTTCTCAAT
TGATAGCTCGATACCACAATCCTTAAAATGATTCCCCACGGGGCCAGATC
TTTTGTGTTCTTTAAGTCGTGTGATTAAATGACGGATCGTTTGACCGACA
TAGCACGATTGGCATCGTGAACAACAAATTTTATAAACCACGCGACTTTT
GAAACACTTTTCAACTAGAGGTTTCAGACTTGGTAAatccattttaagtt
ttttcgaggtaaaaatgattttacacGGAACTTTCAATTTCTTTAGCGAA
CTTTCAGAGCTATCCGACACTTTACCGCGATATTCGATAAAAACCATTTT
CTCATCCACTTTGTCTTCTTCGTCATTCTTGTCATCTTCCTCGTTTTTAC
CGTTTCGAATTATGTTAGACAAAGTTCTAGATATTATTGGTTCGAAGAAC
TGCGTTGGATATTGATTGTTTCGAAGCATGGTCTTGGCCTTTTCCAGACT
GTCGTGGAAACTCTTCCATGAACTGCACGATCGATGTATTCTATGAACTA
AGCCTGACACGACTGACCTTTTGTACTTGGTCGGGGCAAGTGCGTTATAA
TTCATGGTAAGCCCTGTATCTGTCGGTTTCGTATACCATTCTGACGAGAG
TTTTGTTCCATTACATTTGA Run BLAST on NCBI protein sequence of TCONS_00018323-protein >TCONS_00018323-protein ID=TCONS_00018323-protein|Name=TCONS_00018323-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
KCNGTKLSSEWYTKPTDTGLTMNYNALAPTKYKRSVVSGLVHRIHRSCSS
WKSFHDSLEKAKTMLRNNQYPTQFFEPIISRTLSNIIRNGKNEEDDKNDE
EDKVDEKMVFIEYRGKVSDSSESSLKKLKVPCKIIFTSKKLKMDLPSLKP
LVEKCFKSRVVYKICCSRCQSCYVGQTIRHLITRLKEHKRSGPVGNHFKD
CGIELSIENVSILCNTSRSTFYLMALEALMINEHKPSLMTKDEYRSRALV
IKI Run BLAST on NCBI transcript from alignment at sc0000295:273339..274158 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018323 ID=TCONS_00018323|Name=TCONS_00018323|organism=Clytia hemisphaerica|type=transcript|length=820bp|location=Sequence derived from alignment at sc0000295:273339..274158 (Clytia hemisphaerica)
TCAAATGTAATGGAACAAAACTCTCGTCAGAATGGTATACGAAACCGACA
GATACAGGGCTTACCATGAATTATAACGCACTTGCCCCGACCAAGTACAA
AAGGTCAGTCGTGTCAGGCTTAGTTCATAGAATACATCGATCGTGCAGTT
CATGGAAGAGTTTCCACGACAGTCTGGAAAAGGCCAAGACCATGCTTCGA
AACAATCAATATCCAACGCAGTTCTTCGAACCAATAATATCTAGAACTTT
GTCTAACATAATTCGAAACGGTAAAAACGAGGAAGATGACAAGAATGACG
AAGAAGACAAAGTGGATGAGAAAATGGTTTTTATCGAATATCGCGGTAAA
GTGTCGGATAGCTCTGAAAGTTCGCTAAAGAAATTGAAAGTTCCgtgtaa
aatcatttttacctcgaaaaaacttaaaatggatTTACCAAGTCTGAAAC
CTCTAGTTGAAAAGTGTTTCAAAAGTCGCGTGGTTTATAAAATTTGTTGT
TCACGATGCCAATCGTGCTATGTCGGTCAAACGATCCGTCATTTAATCAC
ACGACTTAAAGAACACAAAAGATCTGGCCCCGTGGGGAATCATTTTAAGG
ATTGTGGTATCGAGCTATCAATTGAGAACGTATCAATTCTTTGTAATACG
TCACGTTCAACATTTTATTTAATGGCCCTTGAGGCATTAATGATTAATGA
GCATAAGCCATCTCTTATGACAAAAGACGAGTATAGAAGTAGGGCTTTGG
TAATTAAAATTTAATTCCCAAAACGCTACGTCTATACTCCCTGAGCGATT
TATATACTTGTATGTATTTT Coding sequence (CDS) from alignment at sc0000295:273339..274158 >TCONS_00018323 ID=TCONS_00018323|Name=TCONS_00018323|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0000295:273339..274158 (Clytia hemisphaerica)
AAATGTAATGGAACAAAACTCTCGTCAGAATGGTATACGAAACCGACAGA
TACAGGGCTTACCATGAATTATAACGCACTTGCCCCGACCAAGTACAAAA
GGTCAGTCGTGTCAGGCTTAGTTCATAGAATACATCGATCGTGCAGTTCA
TGGAAGAGTTTCCACGACAGTCTGGAAAAGGCCAAGACCATGCTTCGAAA
CAATCAATATCCAACGCAGTTCTTCGAACCAATAATATCTAGAACTTTGT
CTAACATAATTCGAAACGGTAAAAACGAGGAAGATGACAAGAATGACGAA
GAAGACAAAGTGGATGAGAAAATGGTTTTTATCGAATATCGCGGTAAAGT
GTCGGATAGCTCTGAAAGTTCGCTAAAGAAATTGAAAGTTCCgtgtaaaa
tcatttttacctcgaaaaaacttaaaatggatTTACCAAGTCTGAAACCT
CTAGTTGAAAAGTGTTTCAAAAGTCGCGTGGTTTATAAAATTTGTTGTTC
ACGATGCCAATCGTGCTATGTCGGTCAAACGATCCGTCATTTAATCACAC
GACTTAAAGAACACAAAAGATCTGGCCCCGTGGGGAATCATTTTAAGGAT
TGTGGTATCGAGCTATCAATTGAGAACGTATCAATTCTTTGTAATACGTC
ACGTTCAACATTTTATTTAATGGCCCTTGAGGCATTAATGATTAATGAGC
ATAAGCCATCTCTTATGACAAAAGACGAGTATAGAAGTAGGGCTTTGGTA
ATTAAAATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018323-exon-sc0000295-1491911889:273339..274158 | TCONS_00018323-exon-sc0000295-1491911889:273339..274158 | Clytia hemisphaerica | exon |
| TCONS_00018323-exon-sc0000295-1510915933:273339..274158 | TCONS_00018323-exon-sc0000295-1510915933:273339..274158 | Clytia hemisphaerica | exon |
| TCONS_00018323-exon-sc0000295-1575043694:273339..274158 | TCONS_00018323-exon-sc0000295-1575043694:273339..274158 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000295 | supercontig | sc0000295:273339..274158 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000305 | GIY-YIG_SF |
Blast
The following BLAST results are available for this feature:
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