TCONS_00018329 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018329
Unique NameTCONS_00018329
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018329 ID=TCONS_00018329|Name=TCONS_00018329|organism=Clytia hemisphaerica|type=transcript|length=785bp
TGGCCAATCACAACCCTTTCGTTAATGATAACCAGGTAAGTTGTAGACAA
GTACAAATTAATATTACTTTTCAGTTCATTAAAATTCTTGACTGctcttt
gaattgaattgactCCAATGTATCACCTTTATGTGGAAGTGAACCATGCT
TTGTTTTCTCAGCCTCGAGTtgtctcaaatgttttgaaatatcTTTGTCC
CTTGCTTTGAGCAACGAAACCATAACAGTTTGTTGCTTTTCAATATTGTT
TATCATGTCGAGTAGCTTTTTGAATTCAATTCGTTGTATCAGGTGATGTT
TTTTGTTGAAGATTTCAGTTTTCAAGTTCACTTCTTCTTTGTAATTGTTT
GAGTTGTCAATTAATTTTtcgttcttcttcttcttcatttttagcaCATT
TGTATCGTTCTTTACAACTAAAAGTGTCTTTCCAATCTGATGCAATCGGA
TTTTAATCTTTTGGAGATCTGTCTTTATACTGATAAACTCCCTTCTATTT
TGCTCCCTTGCCTCCACAAATTGATCAATAAAGCCATTTTTTAACTTCAG
AACAAAAGCTAAAACAGTGCAACCAGATAAAAGCAGAAAAAATTGGCAAG
ACTTTGCCTGTATTCTTGTCATATCGAATTAAAAGGTGCTGCTGTAAATT
TCTGAGAGCCGCTcctcttgtttttattttatttttattttcccaGAAAA
GCAAGTAATTCCAGTGAATAATCCAAATTAGCAGCATATACTTCAGTATT
TTTTTTGGTACAATATTCACCATTCAACCTTCGtt
Run BLAST on NCBI

protein sequence of TCONS_00018329-protein

>TCONS_00018329-protein ID=TCONS_00018329-protein|Name=TCONS_00018329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MTRIQAKSCQFFLLLSGCTVLAFVLKLKNGFIDQFVEAREQNRREFISIK
TDLQKIKIRLHQIGKTLLVVKNDTNVLKMKKKKNEKLIDNSNNYKEEVNL
KTEIFNKKHHLIQRIEFKKLLDMINNIEKQQTVMVSLLKARDKDISKHLR
QLEAEKTKHGSLPHKGDTLESIQFKEQSRILMN
Run BLAST on NCBI

transcript from alignment at sc0000295:357327..358111

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018329 ID=TCONS_00018329|Name=TCONS_00018329|organism=Clytia hemisphaerica|type=transcript|length=785bp|location=Sequence derived from alignment at sc0000295:357327..358111 (Clytia hemisphaerica)
aaCGAAGGTTGAATGGTGAATATTGTACCAAAAAAAATACTGAAGTATAT
GCTGCTAATTTGGATTATTCACTGGAATTACTTGCTTTTCtgggaaaata
aaaataaaataaaaacaagaggAGCGGCTCTCAGAAATTTACAGCAGCAC
CTTTTAATTCGATATGACAAGAATACAGGCAAAGTCTTGCCAATTTTTTC
TGCTTTTATCTGGTTGCACTGTTTTAGCTTTTGTTCTGAAGTTAAAAAAT
GGCTTTATTGATCAATTTGTGGAGGCAAGGGAGCAAAATAGAAGGGAGTT
TATCAGTATAAAGACAGATCTCCAAAAGATTAAAATCCGATTGCATCAGA
TTGGAAAGACACTTTTAGTTGTAAAGAACGATACAAATGtgctaaaaatg
aagaagaagaagaacgaAAAATTAATTGACAACTCAAACAATTACAAAGA
AGAAGTGAACTTGAAAACTGAAATCTTCAACAAAAAACATCACCTGATAC
AACGAATTGAATTCAAAAAGCTACTCGACATGATAAACAATATTGAAAAG
CAACAAACTGTTATGGTTTCGTTGCTCAAAGCAAGGGACAAAgatatttc
aaaacatttgagacaACTCGAGGCTGAGAAAACAAAGCATGGTTCACTTC
CACATAAAGGTGATACATTGGagtcaattcaattcaaagagCAGTCAAGA
ATTTTAATGAACTGAAAAGTAATATTAATTTGTACTTGTCTACAACTTAC
CTGGTTATCATTAACGAAAGGGTTGTGATTGGCCA

Coding sequence (CDS) from alignment at sc0000295:357327..358111

>TCONS_00018329 ID=TCONS_00018329|Name=TCONS_00018329|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at sc0000295:357327..358111 (Clytia hemisphaerica)
ATGACAAGAATACAGGCAAAGTCTTGCCAATTTTTTCTGCTTTTATCTGG
TTGCACTGTTTTAGCTTTTGTTCTGAAGTTAAAAAATGGCTTTATTGATC
AATTTGTGGAGGCAAGGGAGCAAAATAGAAGGGAGTTTATCAGTATAAAG
ACAGATCTCCAAAAGATTAAAATCCGATTGCATCAGATTGGAAAGACACT
TTTAGTTGTAAAGAACGATACAAATGtgctaaaaatgaagaagaagaaga
acgaAAAATTAATTGACAACTCAAACAATTACAAAGAAGAAGTGAACTTG
AAAACTGAAATCTTCAACAAAAAACATCACCTGATACAACGAATTGAATT
CAAAAAGCTACTCGACATGATAAACAATATTGAAAAGCAACAAACTGTTA
TGGTTTCGTTGCTCAAAGCAAGGGACAAAgatatttcaaaacatttgaga
caACTCGAGGCTGAGAAAACAAAGCATGGTTCACTTCCACATAAAGGTGA
TACATTGGagtcaattcaattcaaagagCAGTCAAGAATTTTAATGAACT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010295XLOC_010295Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018329-proteinTCONS_00018329-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018329-exon-sc0000295-1491911889:357327..358111TCONS_00018329-exon-sc0000295-1491911889:357327..358111Clytia hemisphaericaexon
TCONS_00018329-exon-sc0000295-1510915933:357327..358111TCONS_00018329-exon-sc0000295-1510915933:357327..358111Clytia hemisphaericaexon
TCONS_00018329-exon-sc0000295-1575043694:357327..358111TCONS_00018329-exon-sc0000295-1575043694:357327..358111Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295supercontigsc0000295:357327..358111 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.120126	0.348695	0.204686	0	0.131273	0.237564	0.518943	0.363324	0.192873	0.998436	0.287146	0.0409638	0.0850826	0.104924	0.1126	0.277427	0.331746	0	0	0.774175	0	0	0.0642053	0.19839	0.0590194	0.0844566	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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