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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018336 ID=TCONS_00018336|Name=TCONS_00018336|organism=Clytia hemisphaerica|type=transcript|length=2221bp
GAGGATTTGGCGGCTGAATGAAATAAGTTGCACTGTTCAGAAATAGACCT
GCTCCATTCATCCACAGAAGAGTTGGAACAATACACCAACTTCTTATCAT
TGATGCCGATGAGGAAAGACACCAAAGTACAAGAATATGTGCCATCAGAG
TTCCAGGAACTCACTCGGGAAGAACGAGAAGATTGGTTGGAATTACAGTG
CGTTCTATTCGAAGAAGAAACTCGATCCTCACTCGATACAAACAACGAAA
ACGATAATTTTATCGATGATTTCGGAAGATATTTGAAGAAAGTGACGAGA
CGCTGGGCTTCTTGGAATCACAGAAGTTTTGGATCCATCAGTTCCATCGA
TCAAGTCAAGGAGCTGGTCGATTGGGAAGAGCAAACACAACAGAAGTTTC
CCACAACAAGTCAACAACAACAGTCCATCACCACAAACAACACGTCAGAC
ACATCTTCCAACGAAAACAATCCATTGAAACGCTTTACACAATACTGTGA
GCGCTCAAAGAACTTgttacacatttttcgaatcgATATTTATAGACCGT
TATGTGATTATTTTAAAGACGTCGAAGACGAGGTTCCTAAATCTGTGGAA
AGGATCGTCCAAAAGTGGGAAGCTCTACTTCACTTCTCACCGCTCAACGA
AAAACTCTTTAACACGTCACGTGATAAACTCGTCAATACGTCATTACGCG
TTAGCCGTAGCACAGACGCGCATCTCGTAGAAAGACTAGTGCCAGATCTC
CACCAAAAGAAACTTGAAGTGTTACGTCTTGCTAACAAGTGGTGTTTAAT
atcgaaagcgaaagtgaatcAACGTCGTGGTACATACACACTTTCGCCAA
AATCTTTGGTCGACCGCGAAGGGAAACAAACAGTTGAAATTGGCAATCAA
GAGTTCGTTAACGTTACGCAACGTGAAACTATGCCGCGTAAGAGAATAGT
TGCGGTGAGTCAAGAACTCGTAAATCAAGATTACGAGCACATTCAGGATG
AGTTATACAAGAGTCGCACGCGTTACGACGAAACATCGCAAGAATTACGT
GCCGCTCaagaaaaatgtaaatattacGAGGACGAGATGACGTTTTGTAG
GACTGAATGCGCGAATTTACGCGACCAATTACAACATACGGCAGAGTTAC
GTAAAGCTATCGAGATGAAAGTAAACGATTCTTATTCATCGAATGGAACG
GGTTTTATCGAGGAAAATAATAACGATAGAACAAGTCAAAGCGTTGTTTA
TGATACAGCATTATGGGAAAAAGAACTGGaaagaatcaaaaataaatatt
cgcgacagaaaatcaaattcatgAACGCTCGTAAGCAAATCGAAGCACTT
AACAAACAATTAGAAATATCACAAACGCGATGTACgcaattgcattcgaa
attcgaatcggACGTATACTCTTGTCGTGCGTTAGAAAAGCAATTAGAGA
CCGCCCGTAAGAACATTCAAACGCAGGGTACGATGGTAGACGCGCTTCAA
CATCAGTGTTACACTTTGAAGCAGGAACTTGACTCCAGCAACGTCAAGAA
AGGCGAACTCTACACCCAGCTCAATAATACGTTACAACACTGTAAGAACG
TGGAACATGATTTAAAGTTGACGCGTTTGAAATTCAAAGAGTTAACGGAC
GAAAACGGACGGCGTCAATCACGTGAAGAGGAACTTGAACGTGAAAACGT
ACAACTCCGTAAACTGATTGAACAGAATGGATTACGTCGACGTTCAGCTG
AGGCAATGAACACTGTAGAATATAACGCTCTACGCCGTCGCTCGATGGAG
ACGTTTCACTCGGAACAAAACTTACTTCGAAGACGTTCTGCGGAAAATTA
CAGCCTCCCACCAAACGATAAACAATGGAAACATCAGGTCCCGTCTTTAC
AATCCTCTACTATCAAAGAGTTGAACAGACCAAAATCACCTGCTAATAAA
CCTAAAGATTGTATGTTTCCTGATATAAACGCCGCACGTTCATTTTAGAT
ATCTCACACCTCTCACAgactttaatatttttttggctTCAGGGGCTGGC
ACCTTGGATTTGCTGCAAAAattaactcgattttttaaacaattttttac
aaaatattatcTATATCATACATATACAATTTATAAACCTCATGTTACAT
TTTCCGTTACAGAAAAAGATATTCAGAAATAATAAAACAtactttgaaaa
agttttatgCATTGCATTTCC Run BLAST on NCBI transcript from alignment at sc0000297:21998..29053+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018336 ID=TCONS_00018336|Name=TCONS_00018336|organism=Clytia hemisphaerica|type=transcript|length=7056bp|location=Sequence derived from alignment at sc0000297:21998..29053+ (Clytia hemisphaerica)
GAGGATTTGGCGGCTGAATGAAATAAGTTGCACTGTTCAGAAATAGGTTG
TTAAAATTATTTCAGAGGTTTCCCGTGTTTATTTTGgagaataatgaaaa
aaattaattgtatTGAgtattaaatttggcggatacATTTATTTGTTTTG
ACGAGAATAAATTTGGACACATTTTGTTGACGAACTTACACCCCTGTCTA
GCTTTACACTTTTCACTTTGATAATCTGCTATCGTTTAAAAAAACCCTTT
TCGAAATTTGAGCCTCTCGTTAGTTTACCTTTAAGGTTTCGCCAAAATGG
AGCCTATTCTGCGTTTGGAAATTATtcatataaaaaacgaaaaaataaaa
tgacaaatttgTTCTAAATACCAAGCAATGGGGAAATAATTTTCTGAACT
GTCACAACCCCTGAGCTTGAATTTCAATTGCTTCGACTTCAGCATAATGA
AAATCCATTTTTGCTAAAAactgtaaaaaatatacagatGGAGTTTAATT
CCCATCTTTCAGAGGGTGTGAGTTCggggtggcactttaatgagtGACTA
TGACGTTGTTATAACAACAATTTGTAATTGTATAACATGATTAATTAAGT
CTTTTCATAAATagcttttttgaagaaaagaataGCAACATTTTTTTTCG
TGTAACGACTTTGTCAATGTAATTGCTTTCATCCTTGAATCTTTATCTTG
AATTTGTTGACCTTCCTTTTGATTCATTAATTTTCTTTGTGATGATCCTT
TACAAGAATTatcttcattaatttttcttctcgtttcttgtTTAATTTTG
ATCAACTTGCCACAGTACTTCTcgatattttttgataaattttcttgaat
tttttaagGTATGAATCAGGGTATTTCCACATGTGGGCTTGAAAGTTTTG
ACtctcttcaatattttttagtgGTCAGCTATTGTTTTAATCCTGGGACA
TATTCTTATCCGAACGTATGTCCCAGTTCATTGTTTctttattatttcaa
aaagGATCTCAAGAAAGTGTCAACTCAGCATAAATTATTGCGAAAATTAT
TAGTTGATCTAATTGAAGTAACTTGGTTGATTACCATACGTTAAACGACT
TCAATTTCGTAATTTAAAATGCTTCAACGAAAAAGTTTTCTTCAGAGAGA
GAGAACGCATTCAGGGAGTTTATAATAAACATCGTTTATCTTCATCAACT
TTCTTCAGACCTGCTCCATTCATCCACAGAAGAGTTGGAACAATACACCA
ACTTCTTATCATTGATGCCGATGAGGAAAGACACCAAAGTACAAGAATAT
GTGGTAAGCTCTCGTTTCCAGCCCCTTAGCTCGCCTGTTAATGATTTTGT
ACAcgctttataagaatatactttataagaatatttacgATGGAATTGGC
caacaaattaagaatatggtaagaataccaCTATCATGGTAAAATTTGGC
AATTGGaactaagaatgccatttttaaggCATTTTACCCTTAAATTGTCA
ATTATTACCCAGAAATGGTGAAAGGTTtgacaaaaataccaaatttgggA
TTGGATCCAAgtctaagaatactgtaagaatctTTCAGGATGGTTTTccc
gaaaaagttaagaatattcatgatgaattgaaaaaaaataccattcttat
aaaaaaatattgcaattataagtGTTTTGAAAAGGGTGATTGATAACAAG
AGCAACTTCTCTACTGTCGACTATACAAAATTGTTgtcaaaaacaatatt
ttgccttttgctattttttctcGCCTTCTTTTTGAACCTTTACCCCTTAG
ATGAGCCTCCACACAAAAAGCTCCTTGCAGTTGTCTGTTCGAAGCAGTCT
CATGAGTGTCATCATTAATTACGATTAGTCATAACTAACCTTGCTTTCCT
GGTACGAGCTGTCTTCTCTCGCACTGTGGTATTGGACTTCGGAAAAGATA
ATACTGTAGcatcttttcattttctttctaaTAACTGAAATCGAACTTAG
TTTTTCATCTTTTGCTTCAGCCATCAGAGTTCCAGGAACTCACTCGGGAA
GAACGAGAAGATTGGTTGGAATTACAGTGCGTTCTATTCGAAGAAGAAAC
TCGATCCTCACTCGATACAAACAACGAAAACGATAATTTTATCGATGATT
TCGGAAGATATTTGAAGAAAGTGACGAGACGCTGGGCTTCTTGGAATCAC
AGAAGTTTTGGATCCATCAGTTCCATCGAGTAAGTTTCTCACTCTTTCGA
AAAATCAATCATGTAACCTAAcgaagtttttttgtttttctttgcatgGT
AGTGGGGCCACAGATGAGGTAATACCCCATCATACCTTTGACTTCTATTC
TATTTTTAACGACATGCTTATATTTTATTGATCGaatgattacacgtttt
tttataatgaacctTATCTTGGCTCCGAGCCCAGACttccttatttttcc
agagaatttcagcctcaaggCTGCTAAGATTGGACTGGTTTGTTGTTTCG
TTAAATAATTGACTACAATTCAGAAAAAGACGTTAATTGAACGTTGTTTC
ATCAATATTTATAAAGTTTAACTCGTACTATtcctgaaataatttttttg
attcttagcctgagcagttccttaacaattccttatttttcagaccattt
tcagcctcaggTTTTTTATAAACGTGTTcgttatataaaaaaacgtgtat
agttTGTATCATCCCACAACACCAAATAACTGGTCCACTATAATTGTCTT
TCTACCAAATGCTTAcaccaaagaagaaaaaaatgacgtGTATAGAAAAT
TGCCGTGTATAGAAAATTGCCATACAATTATGAAATTGATAATTgcctca
aaagaaaaaaacctgCAATTATTAAGAAATAACATCTTCTCACAAATATA
CAACAttgattttgattaatttttcatctCTTTTTACCAACAGTCAAGTC
AAGGAGCTGGTCGATTGGGAAGAGCAAACACAACAGAAGTTTCCCACAAC
AAGTCAACAACAACAGTCCATCACCACAAACAACACGTCAGACACATCTT
CCAACGAAAACAATCCATTGAAACGCTTTACACAATACTGTGAGCGCTCA
AAGAACTTgttacacatttttcgaatcgATATTTATAGACCGTTATGTGA
TTATTTTAAAGACGTCGAAGACGAGGTTCCTAAATCTGTGGAAAGGATCG
TCCAAAAGTGGGAAGCTCTACTTCACTTCTCACCGCTCAACGAAAAACTC
TTTAACACGTCACGTGATAAACTCGTCAATAAGTCATTACGCGTTAGCCG
TAGCACAGACGCGCATCTCGTAGAAAGACTAGTGCCAGATCTCCACCAAA
AGAAACTTGAAGTGTTACGTCTTGCTAACAAGTGGTGTTTAATatcgaaa
gcgaaagtgaatcAACGTCGTGGTACATACACACTTTCGCCAAAATCTTT
GGTCGACCGCGAAGGGAAACAAACAGTTGAAATTGGCAATCAAGAGTTCG
TTAACGTTACGCAACGTGAAACTATGCCGCGTAAGAGAATAGTTGCGGTG
AGTCAAGAACTCGTAAATCAAGATTACGAGCACATTCAGGATGAGTTATA
CAAGAGTCGCACGCGTTACGACGAAACATCGCAAGAATTACGTGCCGCTC
aagaaaaatgtaaatattacGAGGACGAGATGACGTTTTGTAGGACTGAA
TGCGCGAATTTACGCGACCAATTACAACATACGGCAGAGTTACGTAAAGC
TATCGAGATGAAAGTAAACGATTCTTATTCATCGAATGGAACGGGTTTTA
TCGAGGAAAATAATAACGATCGAACAAGTCAAAGCGTTGTTTATGATACA
GCATTATGGGAAAAAGAACTGGaaagaatcaaaaataaatattcgcgaca
gaaaatcaaattcatgAACGCTCGTAAGCAAATCGAAGCACTTAACAAAC
AATTAGAAATATCACAAACGCGATGTACgcaattgcattcgaaattcgaa
tcggACGTATACTCTTGTCGTGCGTTAGAAAAGCAATTAGAGACCGCCCG
TAAGAACATTCAAACGCAGGGTACGATGGTAGACGCGCTTCAACATCAGT
GTTACACTTTGAAGCAGGAACTTGACTCCAGCAACGTCAAGAAAGGCGAA
CTCTACACCCAGCTCAATAATACGTTACAACACTGTAAGAACGTGGAACA
TGATTTAAAGTTGACGCGTTTGAAATTCAAAGAGTTAACGGACGAAAACG
GACGGCGTCAATCACGTGAAGAGGAACTTGAACGTGAAAACGTACAACTC
CGTAAACTGATTGAACAGAATGGATTACGTCGACGTTCAGCTGAGGCAAT
GAACACTGTAGAATATAACGCTCTACGCCNtctccaaagccttagtatgt
tcttagaatgttcttaaatttttgggctcgaagccttatgttcttatata
gtttgttcttataaaaaaaacgtgtagtgggGCCACAGATGAGGTAATAC
CCCGTCATACCTTTgacttctattttatttttaacgACATGCTTATATTT
TATTGATCGaatgattacacgtttttttataatgaaccttaacttggctc
cgagCCCAGACttccttatttttccagagaatttcagcctcaaggCTGCT
AAGATTGGACTGGTTTGTTGTTTCGTTAAATAATTGACTACAATTCAGAA
AAAGACGTTAATTGAACGTTGTTTCATCAATATTTATAAAGTTTAACTCG
TACTATtcctgaaataatttttttgatttttagcctgagcagttccttaa
caattccttatttttcagaccattttcagcctcaggTTTTTTATAAACGT
GTTcgttatataaaaaaacgtgtagtttgtATTATCCCACAACACCAAAT
AACTGGTCCACTATAATTATCTTTCTACCAAATGCTTacatcaaagaaga
aaaaaatgacgtGTATAGGAAATTGCAATACAATTATGAAATTGATAATT
GCCTCAAAAGAAAAAACCTGCAATTATTAAGAAATAACATCTTCTCACAA
ATATACAACATtgattttgattcattttttcaTCTCANctcaaaagaaaa
aaacctgCAATTATTAAGAAATAACATCTTCTCACAAATATACAACAttg
attttgattaatttttcatctCTTTTTACCAACAGTCAAGTCAAGGAGCT
GGTCGATTGGGAAGAGCAAACACAACAGAAGTTTCCCACAACAAGTCAAC
AACAACAGTCCATCACCACAAACAACACGTCAGACACATCTTCCAACGAA
AACAATCCATTGAAACGCTTTACACAATACTGTGAGCGCTCAAAGAACTT
gttacacatttttcgaatcgATATTTATAGACCGTTATGTGATTATTTTA
AAGACGTCGAAGACGAGGTTCCTAAATCTGTGGAAAGGATCGTCCAAAAG
TGGGAAGCTCTACTTCACTTCTCACCGCTCAACGAAAAACTCTTTAACAC
GTCACGTGATAAACTCGTCAATACGTCATTACGCGTTAGCCGTAGCACAG
ACGCGCATCTCGTAGAAAGACTAGTGCCAGATCTCCACCAAAAGAAACTT
GAAGTGTTACGTCTTGCTAACAAGTGGTGTTTAATatcgaaagcgaaagt
gaatcAACGTCGTGGTACATACACACTTTCGCCAAAATCTTTGGTCGACC
GCGAAGGGAAACAAACAGTTGAAATTGGCAATCAAGAGTTCGTTAACGTT
ACGCAACGTGAAACTATGCCGCGTAAGAGAATAGTTGCGGTGAGTCAAGA
ACTCGTAAATCAAGATTACGAGCACATTCAGGATGAGTTATACAAGAGTC
GCACGCGTTACGACGAAACATCGCAAGAATTACGTGCCGCTCaagaaaaa
tgtaaatattacGAGGACGAGATGACGTTTTGTAGGACTGAATGCGCGAA
TTTACGCGACCAATTACAACATACGGCAGAGTTACGTAAAGCTATCGAGA
TGAAAGTAAACGATTCTTATTCATCGAATGGAACGGGTTTTATCGAGGAA
AATAATAACGATAGAACAAGTCAAAGCGTTGTTTATGATACAGCATTATG
GGAAAAAGAACTGGaaagaatcaaaaataaatattcgcgacagaaaatca
aattcatgAACGCTCGTAAGCAAATCGAAGCACTTAACAAACAATTAGAA
ATATCACAAACGCGATGTACgcaattgcattcgaaattcgaatcggACGT
ATACTCTTGTCGTGCGTTAGAAAAGCAATTAGAGACCGCCCGTAAGAACA
TTCAAACGCAGGGTACGATGGTAGACGCGCTTCAACATCAGTGTTACACT
TTGAAGCAGGAACTTGACTCCAGCAACGTCAAGAAAGGCGAACTCTACAC
CCAGCTCAATAATACGTTACAACACTGTAAGAACGTGGAACATGATTTAA
AGTTGACGCGTTTGAAATTCAAAGAGTTAACGGACGAAAACGGACGGCGT
CAATCACGTGAAGAGGAACTTGAACGTGAAAACGTACAACTCCGTAAACT
GATTGAACAGAATGGATTACGTCGACGTTCAGCTGAGGCAATGAACACTG
TAGAATATAACGCTCTACGCCGTCGCTCGATGGAGACGTTTCACTCGGAA
CAAAACTTACTTCGAAGACGTTCTGCGGAAAATTACAGCCTCCCACCAAA
CGATAAACAATGGAAACATCAGGTCCCGTCTTTACAATCCTCTACTATCA
AAGAGTTGAACAGACCAAAATCACCTGCTAATAAACCTAAAGATTGTATG
TTTCCTGATATAAACGCCGCACGTTCATTTTAGATATCTCACACCTCTCA
CAgactttaatatttttttggctTCAGGGGCTGGCACCTTGGATTTGCTG
CAAAAattaactcgattttttaaacaattttttacaaaatattatcTATA
TCATACATATACAATTTATAAACCTCATGTTACATTTTCCGTTACAGAAA
AAGATATTCAGAAATAATAAAACAtactttgaaaaagttttatgCATTGC
ATTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018336-exon-sc0000297-1491911889:21998..22043 | TCONS_00018336-exon-sc0000297-1491911889:21998..22043 | Clytia hemisphaerica | exon |
| TCONS_00018336-exon-sc0000297-1510915933:21998..22043 | TCONS_00018336-exon-sc0000297-1510915933:21998..22043 | Clytia hemisphaerica | exon |
| TCONS_00018336-exon-sc0000297-1575043694:21998..22043 | TCONS_00018336-exon-sc0000297-1575043694:21998..22043 | Clytia hemisphaerica | exon |
| TCONS_00018336-exon-sc0000297-1491911889:23206..23300 | TCONS_00018336-exon-sc0000297-1491911889:23206..23300 | Clytia hemisphaerica | exon |
| TCONS_00018336-exon-sc0000297-1510915933:23206..23300 | TCONS_00018336-exon-sc0000297-1510915933:23206..23300 | Clytia hemisphaerica | exon |
| TCONS_00018336-exon-sc0000297-1575043694:23206..23300 | TCONS_00018336-exon-sc0000297-1575043694:23206..23300 | Clytia hemisphaerica | exon |
| TCONS_00018336-exon-sc0000297-1491911889:24018..24226 | TCONS_00018336-exon-sc0000297-1491911889:24018..24226 | Clytia hemisphaerica | exon |
| TCONS_00018336-exon-sc0000297-1510915933:24018..24226 | TCONS_00018336-exon-sc0000297-1510915933:24018..24226 | Clytia hemisphaerica | exon |
| TCONS_00018336-exon-sc0000297-1575043694:24018..24226 | TCONS_00018336-exon-sc0000297-1575043694:24018..24226 | Clytia hemisphaerica | exon |
| TCONS_00018336-exon-sc0000297-1491911889:27183..29053 | TCONS_00018336-exon-sc0000297-1491911889:27183..29053 | Clytia hemisphaerica | exon |
| TCONS_00018336-exon-sc0000297-1510915933:27183..29053 | TCONS_00018336-exon-sc0000297-1510915933:27183..29053 | Clytia hemisphaerica | exon |
| TCONS_00018336-exon-sc0000297-1575043694:27183..29053 | TCONS_00018336-exon-sc0000297-1575043694:27183..29053 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000297 | supercontig | sc0000297:21998..29053 + |
Blast
The following BLAST results are available for this feature:
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