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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018337 ID=TCONS_00018337|Name=TCONS_00018337|organism=Clytia hemisphaerica|type=transcript|length=1804bpRun BLAST on NCBI transcript from alignment at sc0000297:36698..44563+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018337 ID=TCONS_00018337|Name=TCONS_00018337|organism=Clytia hemisphaerica|type=transcript|length=7866bp|location=Sequence derived from alignment at sc0000297:36698..44563+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00018337 vs. Swiss-Prot (Human)
Match: BRWD1 (Bromodomain and WD repeat-containing protein 1 OS=Homo sapiens GN=BRWD1 PE=1 SV=4) HSP 1 Score: 442.58 bits (1137), Expect = 1.077e-136 Identity = 225/495 (45.45%), Postives = 319/495 (64.44%), Query Frame = 1
Query: 343 VAKFLEDGPCQEAAKVLRSHLTKNKLIIPRKDWKGDEHDRTFEEYDKLNNHVQQNHLLSLARE---LLNPEARTSFSKKLNSLVCRGSFSLIK--QNEKEKICKPASHKAACVHSAPFLPTFSRKTSSICTSLLARDVSG-TNFKSFIPKTANIYSKFSMHKRILGHLASVYCILFDHTGSIIVTGADDNLLKVWSAYDGRLMATFRGHSQQITDITIDSSNQYIASGSLDKTIRVWNLHNTYPIAVLQGHSGMVTSLQFCPCADPKVRYLISTGGDSNVCFWPWYPETGEFSLTPVKFNEKTRAGVQMLCSSFSPGGSFLVAGSTDNYIRVYQLYPNEPEKIAELPNHLDHVDSILYNNFGNRFLSGSRDGVALIWSYQNGEWQSKQLDSSNPFKGD--SLEANIVDPKNKLKVTMISWSTNDKYVITAATDFHIRLWDSYKAELVRVLKGHTDEVYILETHPIEQNLLLSAGHDGNLILWDIESGSQVKRFFN 1803
+A++L GPC+ AA+VL L + +L+ R DW+G+EH+R++EE N HV +HLL + + +L+ E S S+ + SL+ G SL++ ++ + + K ++ A P +P ++ + ++G + F + P T +Y MH+RILGHL++VYC+ FD TG I TG+DD L+K+WS ++GRL++T RGHS +I+D+ ++ N IA+GS DK IRVW L P+AVLQGH+G +TSLQF P A RY++STG D VCFW W E+ +FS P+KF EK R GVQMLCSSFS GG FL GSTD+ IR+Y L PEKIAEL +H D VDSI + N G+RFLSGSRDG A IW ++ EW+S LD + GD S E + P KVTMI+W+ ND V+TA D +++W+SY +L+ L GH DEV++LETHP + ++LSAGHDG++ +WDI G+++K +FN
Sbjct: 22 IARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHNRSYEELVLSNKHVAPDHLLQICQRIGPMLDKEIPPSISR-VTSLLGAGRQSLLRTAKDCRHTVWKGSAFAALHRGRPPEMPVNYGSPPNLVEIHRGKQLTGCSTFSTAFPGT--MYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTMIAAGSCDKIIRVWCLRTCAPVAVLQGHTGSITSLQFSPMAKGSQRYMVSTGADGTVCFWQWDLESLKFSPRPLKFTEKPRPGVQMLCSSFSVGGMFLATGSTDHVIRMYFLGFEAPEKIAELESHTDKVDSIQFCNNGDRFLSGSRDGTARIWRFEQLEWRSILLDMATRISGDLSSEEERFMKP----KVTMIAWNQNDSIVVTAVNDHVLKVWNSYTGQLLHNLMGHADEVFVLETHPFDSRIMLSAGHDGSIFIWDITKGTKMKHYFN 509 The following BLAST results are available for this feature:
BLAST of TCONS_00018337 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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