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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018353 ID=TCONS_00018353|Name=TCONS_00018353|organism=Clytia hemisphaerica|type=transcript|length=2295bp
GCTGTTCAAACAAAACCCGCCCCGTCTAGGACTAATAATTATGGAAAGCC
ATCAGAAGCACCAGCCAAGAAACCTCAACCACATTATCAACCTCTATCGA
ATACGACATCCAAGCCTCCACCGAATACGACATACAAACCTCCAACAAGC
ATCACATACAAACCATACCAAAAGGTCGACCTGGTCATCAACACTCAACC
AATGAAACGCTCATCTTCGCGTGAAAATTTGTTAGAAACCAACCTTGATG
ATATCGACACATCCTCTTTCTTACCGCCACCGCCACAGGACTTGTTGGAT
GAGCAAGATTTCAATCCTGTTGGTAATGAAGAAACAAACATTGACTCAAC
TGATGATGAAGCTGAATTACCGCCTTCCAAACCCGCCCCTACACCCTCAA
AACCCGCCCTACCGTCTTCTAAATCTCAAGTGACGTCAAATGTTCCTGTC
ATGCCACGCTACAACGCCAAGAGTCAATTTCAACGTCATGAACAGGAGCG
AACTCACCATGACCAACATTCAAGAGGATTTGCACGTGCACCGCCACCAG
CAGTTCGcccaaaaagtttcaaaccgCCATCTTCAACGCCCGCGACCAAT
GCTGTCAAAGGTGAGTTTAAATCGCGTTCTGAAAATGACTACGATCGAAG
GAGACAAACTCTCGATAAAGACTTTGATGCGCCGGGTAATCATCGTTCGT
CCGCGCGAAAGAATTCATCCGAAGAAGAGGACGCTCCACCACGCCCTCCT
CCACCTAAAAGCGTAACGCCATCACCACGCCATTCCAAATCACCACAATT
TACATACGCCAACGGGCATCAAGACTTTCCGCGCTCTTATTCGTTCGGCA
AACGTAACGACGCCCCAACAAATAATGGCACAGAAGGGGCGGGGGCGGAG
ACTGTAGACTTTAAAACGAAGATGAGAATGTTTAACAAGTACAACCAGTA
acgaaatgaagaaaaattggaaTGTCGAGAtgtcagaaaaatgaaaattc
tgcTGCGTCTAGTTCGCTTGAAGAGTAAAGAGTGTCCTAGATAATGCTTA
TGCTCtccgaaaaaaaaaagtatttatatTGCTGATGGTAGACTTGTTTT
CGTTAAAAAAAATACCGCTAATGAACTCAATTTGAATGCTGAGGTTTGTG
GTAAATCTAATCGTGGGAACTGTCTGTTCATTAACTGTCCCGGTTAAACT
CGCTGGTCCAAATAAGGATCAAAATAAAGTGTCTGCCAGTACATAGTATG
GAGTCAGTCCACTTTAACTTAAACAGTTCCCTGGTGCTTTTATTATTCCA
ATTTTGGTTTCTCGAGAAGACTTAACTTTGCTCTCATCTGTTTAAAAACT
TAAGAGTCTTTGGGAATATTTCCCTGATAATTTTTTGTAGGTGATATTAT
AAGATAAATGTATTTGATTTTATAGATTTGTTTGTTTAGGTATATTATTG
TTTTAGTTACTTAATGTCTGAAGGTAAGTAATGGTCATTCATTGCTTTCA
CTTACTATGCTGAATTTCTTTTAGAAAGTGCGTCTATGACATTCCTGCGA
AATAAGTTGCATTATCCCGTCCTTCCTTTGAAGAAGCCACCTATTGTagt
tcagcaaaaatttttctAGGATGAAGTTCTCAGGGTGTTAGATGCAGGTG
TGTATGACTATCGCCGTGTAGTAATTGgtatttaattaatttttaatgga
acttttatatggatgaaatcgATTATATAAATATGCTAACCACACTATTG
TTTTTATActatttttttgtgattcaattttttttggtaaaatttctaAA
AGTTTTTCTTACGCGCTCAGCCATTTAGACATCTGtttagctttttgttt
ttgtaagtagTAATTATAAATTGTTAGATAATGGTGAACGTTATTCTTCT
TTGAGACAGGAGACAGGAGACAAACACAAAAACCTATACTTAAGGATGAG
ATCAAAGTTTTGAACAGCAGCCTAAGTTTTGAAGCAATCTTGATTTCTTG
CGAAAAGCTCAATCCGACAATTTGGGTAGACATAAATTTTAGATGTTTAT
TAATTGCTCAATCGTTTGTAAAACGTAACAATAAAATCTCCTGTCAGCCT
TTAGGTGAATTTTGTAGATATTTTATTGCAAATAATGATATCTCTATGTT
TTGTACTTCTAGCTTttgcttttttctcaattttcttttttgtacaCTAC
ACATTTCAATATTCTTTTATTCTCTTTTCTCGATTTGGGAAGATTAACTT
ATgtcaaaattattaaagaaacaCACTTTCGTGGTTATTCATCGG Run BLAST on NCBI transcript from alignment at sc0000297:79155..82402+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018353 ID=TCONS_00018353|Name=TCONS_00018353|organism=Clytia hemisphaerica|type=transcript|length=3248bp|location=Sequence derived from alignment at sc0000297:79155..82402+ (Clytia hemisphaerica)
GCTGTTCAAACAAAACCCGCCCCGTCTAGGACTAATGTAAGTCGTTTTCG
TTTTACCGTTATTACAAGGGTTGAGCATCTTCAAAGTATAACTCTAGATC
TTTTTTCGCCATCCATTTATCTTGATTTCAGAAGTTCCACCTTTTTCCTT
CATAGAATTATGGAAAGCCATCAGAAGCACCAGCCAAGAAACCTCAACCA
CATTATCAACCTCTATCGAATACGACATCCAAGCCTCCACCGAATACGAC
ATACAAACCTCCAACAAGCATCACATACAAACCATACCAAAAGGTCGACC
TGGTCATCAACACTCAACCAATGAAACGCTCATCTTCGCGTGAAAATTTG
TTAGAAACCAACCTTGATGATATCGACACATCCTCTTTCTTACCGCCACC
GCCACAGGTAGGGTGGACTAACTGTACCAGGACTCATCCAGCTGAACTGA
CTTATACCGAACATGTGTCATGAGTTCTCTCTTTGATTAGAATAAGGTTT
TTAGAGTCAAGTTAGGGCTCTGCGACTTAAGGTATTAACTAAAAATGCTG
ATTGTGACCATATGTAACCAGTTATGCCACAGGCGTAAAAATAAATGATG
GTTTCCaacatatttattttgttatcTTCTTTGagttaaaagttttgttt
ttaaatgagagtgatatcgtttgcttactcatcaattttaatttacaagc
tttttcacattgaattgaaacggttgtggagcaagattggtcagaaagtg
gaaaagaaaaacaattttttgtttattcagcacaatataacaatagtgag
acactgtcctgatatgaaatatgtgtctgatataaaacgggaacacttat
gtaaaaattaaaCCTTTAACTTTAAAGCAAAGTCTCGCGTCTCagaattt
tgattatttcaacACATTTGACTTCTTCTGTTAGGACTTGTTGGATGAGC
AAGATTTCAATCCTGTTGGTAATGAAGAAACAAACATTGACTCAACTGAT
GATGAAGCTGAATTACCGCCTTCCAAACCCGCCCCTACACCCTCAAAACC
CGCCCTACCGTCTTCTAAATCTCAAGTGACGTCAAATGTTCCTGTCATGC
CACGCTACAACGCCAAGAGTCAATTTCAACGTCATGAACAGGAGCGAACT
CACCATGACCAACATTCAAGGTAGGTTTTGATTTTATCATTCTTTGTCCG
AGTTGCTTACCTAGCTTTGAGGATAGGAGTTTGGTTTTCAATCAACTATA
TTGTATTTTAAAAGTCACTAAAGAGCTTCAGTTGTATTTAGTTCGATGAA
TATTCTGTTCTCAATATTCAACTCACGTTGTTTAAACTtgtataccgtat
tacttcgaataaacgcccccttcttgtATAAGGCATTTTGAAGCTTATTG
TTGAAAAACTGTGAAAAAGATCATCTCTTTTCCACTCTCAACTTTTAACT
AATTTCCCCTTCTTATTTTCTTTGCAGAGGATTTGCACGTGCACCGCCAC
CAGCAGTTCGcccaaaaagtttcaaaccgCCATCTTCAACGCCCGCGACC
AATGCTGTCAAAGGTGAGTTTAAATCGCGTTCTGAAAATGACTACGATCG
AAGGAGACAAACTCTCGATAAAGACTTTGATGCGCCGGGTAATCATCGTT
CGTCCGCGCGAAAGAATTCATCCGAAGAAGAGGACGCTCCACCACGCCCT
CCTCCACCTAAAAGCGTAACGCCATCACCACGCCATTCCAAATCACCACA
ATTTACATACGCCAACGGGCATCAAGACTTTCCGCGCTCTTATTCGTTCG
GCAAACGTAACGACGCCCCAACAAATAATGGCACAGAAGGGGCGGGGGCG
GAGACTGTAGACTTTAAAACGAAGATGAGAATGTTTAACAAGTACAACCA
GTAacgaaatgaagaaaaattggaaTGTCGAGAtgtcagaaaaatgaaaa
ttctgcTGCGTCTAGTTCGCTTGAAGAGTAAAGAGTGTCCTAGATAATGC
TTATGCTCtccgaaaaaaaaaagtatttatatTGCTGATGGTAGACTTGT
TTTCGTTAAAAAAAATACCGCTAATGAACTCAATTTGAATGCTGAGGTTT
GTGGTAAATCTAATCGTGGGAACTGTCTGTTCATTAACTGTCCCGGTTAA
ACTCGCTGGTCCAAATAAGGATCAAAATAAAGTGTCTGCCAGTACATAGT
ATGGAGTCAGTCCACTTTAACTTAAACAGTTCCCTGGTGCTTTTATTATT
CCAATTTTGGTTTCTCGAGAAGACTTAACTTTGCTCTCATCTGTTTAAAA
ACTTAAGAGTCTTTGGGAATATTTCCCTGATAATTTTTTGTAGGTGATAT
TATAAGATAAATGTATTTGATTTTATAGATTTGTTTGTTTAGGTATATTA
TTGTTTTAGTTACTTAATGTCTGAAGGTAAGTAATGGTCATTCATTGCTT
TCACTTACTATGCTGAATTTCTTTTAGAAAGTGCGTCTATGACATTCCTG
CGAAATAAGTTGCATTATCCCGTCCTTCCTTTGAAGAAGCCACCTATTGT
agttcagcaaaaatttttctAGGATGAAGTTCTCAGGGTGTTAGATGCAG
GTGTGTATGACTATCGCCGTGTAGTAATTGgtatttaattaatttttaat
ggaacttttatatggatgaaatcgATTATATAAATATGCTAACCACACTA
TTGTTTTTATActatttttttgtgattcaattttttttggtaaaatttct
aAAAGTTTTTCTTACGCGCTCAGCCATTTAGACATCTGtttagctttttg
tttttgtaagtagTAATTATAAATTGTTAGATAATGGTGAACGTTATTCT
TCTTTGAGACAGGAGACAGGAGACAAACACAAAAACCTATACTTAAGGAT
GAGATCAAAGTTTTGAACAGCAGCCTAAGTTTTGAAGCAATCTTGATTTC
TTGCGAAAAGCTCAATCCGACAATTTGGGTAGACATAAATTTTAGATGTT
TATTAATTGCTCAATCGTTTGTAAAACGTAACAATAAAATCTCCTGTCAG
CCTTTAGGTGAATTTTGTAGATATTTTATTGCAAATAATGATATCTCTAT
GTTTTGTACTTCTAGCTTttgcttttttctcaattttcttttttgtacaC
TACACATTTCAATATTCTTTTATTCTCTTTTCTCGATTTGGGAAGATTAA
CTTATgtcaaaattattaaagaaacaCACTTTCGTGGTTATTCATCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018353-exon-sc0000297-1491911889:79155..79190 | TCONS_00018353-exon-sc0000297-1491911889:79155..79190 | Clytia hemisphaerica | exon |
| TCONS_00018353-exon-sc0000297-1510915933:79155..79190 | TCONS_00018353-exon-sc0000297-1510915933:79155..79190 | Clytia hemisphaerica | exon |
| TCONS_00018353-exon-sc0000297-1575043694:79155..79190 | TCONS_00018353-exon-sc0000297-1575043694:79155..79190 | Clytia hemisphaerica | exon |
| TCONS_00018353-exon-sc0000297-1491911889:79310..79561 | TCONS_00018353-exon-sc0000297-1491911889:79310..79561 | Clytia hemisphaerica | exon |
| TCONS_00018353-exon-sc0000297-1510915933:79310..79561 | TCONS_00018353-exon-sc0000297-1510915933:79310..79561 | Clytia hemisphaerica | exon |
| TCONS_00018353-exon-sc0000297-1575043694:79310..79561 | TCONS_00018353-exon-sc0000297-1575043694:79310..79561 | Clytia hemisphaerica | exon |
| TCONS_00018353-exon-sc0000297-1491911889:80089..80324 | TCONS_00018353-exon-sc0000297-1491911889:80089..80324 | Clytia hemisphaerica | exon |
| TCONS_00018353-exon-sc0000297-1510915933:80089..80324 | TCONS_00018353-exon-sc0000297-1510915933:80089..80324 | Clytia hemisphaerica | exon |
| TCONS_00018353-exon-sc0000297-1575043694:80089..80324 | TCONS_00018353-exon-sc0000297-1575043694:80089..80324 | Clytia hemisphaerica | exon |
| TCONS_00018353-exon-sc0000297-1491911889:80632..82402 | TCONS_00018353-exon-sc0000297-1491911889:80632..82402 | Clytia hemisphaerica | exon |
| TCONS_00018353-exon-sc0000297-1510915933:80632..82402 | TCONS_00018353-exon-sc0000297-1510915933:80632..82402 | Clytia hemisphaerica | exon |
| TCONS_00018353-exon-sc0000297-1575043694:80632..82402 | TCONS_00018353-exon-sc0000297-1575043694:80632..82402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000297 | supercontig | sc0000297:79155..82402 + |
Blast
The following BLAST results are available for this feature:
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