TCONS_00018374 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018374
Unique NameTCONS_00018374
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018374 ID=TCONS_00018374|Name=TCONS_00018374|organism=Clytia hemisphaerica|type=transcript|length=1439bp
CCTAAAGTCATGAGAATCATACCATGATTGATACTGCCTACATCTTATAT
CAGGAAATGTACCATGTAAAgaTGGGATTCGTTATTACAAAGTAGCATGG
CAAGAAGCATGGTTACCTGAACACCAGCTTATCCAACACCAAACACTGAT
CGAAGCATACTGGCGCACACAGAATGATCTAACAAATGCAAACAATGCAG
GGGAGAGCTCACAGACAATCACCTCAAATGCAAATAAGGTTCAGATTGCT
GTTTCCAACATCTCCAAATCAACCAATGCCCCCTTCTACGGCAATCTGAA
CTTGACAGAACTGACAGCAGCTGCCACAACCAATGCCAGCAATGCAGGCG
ATTCACCAGAAACACAATCTACACCTGCTACAATCAAAATAAAGGCCAAA
AATACAACATCTTCTGCTAAAACACCGACAGGCTCTATCGTAGAAGCAAC
GGATGAAAGCGCAGTAACAGCTGCAGCACACACTATATTAGCACAAGTGA
TGAAGGATAGTGAAGTGGAGAAAGCAGTCGAAGGTGAGGAGGGACAAGAT
GAGAACACTTACATCGAAATCCCTTTGAATGTCGTTCTTGAAGCCACCAT
TGAAGCCGAAAACGCCGCTACAAACGAAAGCACGCCCAAAGTTGAACTAA
AACCACATCAGGCGGCCTGGCGAAAGAAAGCCAACAGTTCTTCATTACAA
TTGGATGGTTTTGATTTGGTAAACATTGAAAACTCCAACGCTAGCATGGA
AGAATTGGAAGCAAACGCACGTGAAACGTTGAGCTCGTTCCGTCGTAAAA
GAGTTCGCTTCCCTAACGGAACATCCAAACTTCCACAAGAATGTTTCTTC
TGTTTGAAGAAGTTGTCTAACCGAAAGAAGCTTCGTGAACATCAGTTCAG
TGTTCATTTCAAAAACGTTGGTGAATTTATGTGTGgaatttgtaaacaaa
gatttgtgtTCGGGCGTCAGTTGAAAGCGCACATGTTGGTTCACTCAGAT
AACCGCAACTATCAATGTCAGTATTGTGGCCTGACTTGTAAACGACGCTC
ACATCTTCACAAACATGTTCAAACACACAACCAAGAGCGAAACTATCGTT
GTGATGTGTGCCATACGAACTTCAAAGTACAAGCAGAACTGAAAGATCAT
TGTATGTCTGATCACAAAAATCAGACCAATCAGTGTAACGTTTGTAAACA
AACCCTACACACCCCATTCTCTGTTTACATCCACAGCATGCGTCATTCGG
GAACACGTGATCACATCTGCGAAACGTGTGGCGCATCCTTCAAACGCAAA
CAACATCTCATCGCCCACCGAAACACACATGCAGAACTACGCGAGAAAAT
AAAATGTCCGGCCTGCGATAAGGAAGTTCCGGATCGGAAGTATCTCAGAA
GACATATGGAACAGATGCACAAAGAATTGGCAGCAGANN
Run BLAST on NCBI

transcript from alignment at sc0000297:166868..172421+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018374 ID=TCONS_00018374|Name=TCONS_00018374|organism=Clytia hemisphaerica|type=transcript|length=5554bp|location=Sequence derived from alignment at sc0000297:166868..172421+ (Clytia hemisphaerica)
CCTAAAGTCATGAGAATCATACCATGATTGATACTGCCTACATCTTATAT
CAGGAAATGTACCATGTAAAGTAGGTTTCTTTcatcattttaaagctttt
ccaTAGATTTTTGGATTAAAAATTTGTCCTTTTAATATCTGGATAGCAAA
AGGTTGGTGCTGGTGGATTCGGTTAGTCCCATTCCCAAAATACCTAGGCG
CTCTAGGCTAAAAAGGTAATTCCTGATATGGCCCTCCCCCAACTTAGGAC
TACCAGTCCTTCTAATCTAATAACATGGNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaagatcagttcattatga
gtgcacacagCTACCTTtgtatcaactacaaatattcgtgacatcctata
acgatcattacttatgttcaaactgcgtCCGATTAACGAAgaacctaaga
aataaagtggggaaaaacactcaacatatgatgcaaagtgaacttaaaaa
gaaagacgacgtcatacaaaaacttTTTCGTAGGACAATTGAATGGTCTA
CTTtgtcaaaagcctttgaaaaatctaggtACACAACATCCGCATTAGCA
TCTTTGTCCAATATATTTAGTATCAGGTCAtagttttcggcaattattgc
cgtttttggaaagAGAGTTAAAATTGTTATTGAGCACATAGTatcgggtg
cgccacaaaaaagtttccctcttaaaaacaaattttctcgaaatctagaa
attttaaaagaaccatatATACGTACCTATTCCATTGGAGAGAacaaaga
taaacttaaattttgatgagtcattgtttaaattcagttcattagatcaa
aagttatggtcaattgaataaaataataactttctgaaagtggtcaaaag
tgtaaaaaatcaacctttcaaattaaacagaagcatataATTGCATGATG
CATctttattttcgtttcagtcattaaaaattataattagctgtctaaat
gacctctTGTCATATAAAAGAAGgatgaatttcaataaaaggaagaaaat
ttgttgaaaaaagccaaaaaaaaattttaattgactttaaggttgttttt
taaaattgaggATTGTGATCAATTCCGGCTgtggaattttctaaaaatca
ccaTGGAAATCCAgttttttgtgctctttccaaTGGTATAGACGAGAGAG
TGCCCTTTTTCCTAGTTTGGGAAATATTCCCACTACTTCCTAAATAGGAA
GTatcaaacaatagaaattttgaATTCTTACTTGAACAAGGTATACGcct
tgtttaaggtattacTCCTGACTGGTTTTGGGAGCGGTaaggattttcag
attttttgaaaaggtgggggttgggttAGTGAGAAATTTCAGGAGAGATG
TTTCCCAGTATGACAGTTATTGCATTATAAAAAATGGCAGATTGACTAGG
AAAAGGTCTGTAACACAAATTATGCATAATGAGCCTTAATGTTTTTTATG
CTAAAgtatttaattattcaacaatgTAAGTTGGTCTAACCTTTTgattt
catatttatttttcaaaatatatataacactcaATCAATGACTCTGACCT
TCATTATTCCATCAAAATTTGTGTTGTTGAAGAGTGTTGATAACATCAGA
tattttttgtccttttgtATCGGTGTGGCAACTTTTCTTTCTCCAGTTGA
GATAAAAACACACTTTTTCGTCTTAGCAGTAAGagggtttttttttcagt
taaataaccTAGATTTTTGTCAATATTCACAAAACCTGTGGTATCAGTGT
ATTTTTTCAGCCGAATAGAAATTGGAATGATATAGGGTGTAATAGGAACC
TCCTTATTTAGGAGTTTATTAAATAATTGGTCGTTGGTAATGCTATTATT
TCTGACTCGCCAGGTGAAGGTGTCTAGAAAACCAAAACCatagtttagaa
aaaaagaataaattgCTAGAGTAATGCATtgtgaaaatcacaaaaaaaaa
acgaaaaataaaacttagGCAGAATCCCTCATTTGTTTACTCTAGGGGTC
AGAAAACTAGTATCTGTAAACATTTTTCATGAATGTTACCCTGGGTTCTT
TGTGCTGATGCAATTGAACAATCTTAAACCTGACTCATCTTAGAAAAATA
ACGTAGTGAATATTAAGTCCTCAAAATCATTCTTGATTAAAAACCCTTTA
TTATCCTTTATTGGTTTTCATAAAATTATAGTAAAAGTTTGACaagcttg
aaaaatattttgtattttatattttcaggaTGGGATTCGTTATTACAAAG
TAGCATGGCAAGAAGCATGGTTACCTGAACACCAGCTTATCCAACACCAA
ACACTGATCGAAGCATACTGGCGCACACAGAATGATCTAACAAATGCAAA
CAATGCAGGGGAGAGCTCACATACAATCACCTCAAATGCAAATAAGGTTC
AGATTGCTGTTTCCANAGAGAGCTCACAGACAATCACCTCAAATGCAAAT
AAGGTTCAGATTGCTGTTTCCAACATCTCCAAATCAACCAATGCCCCCTT
CTACGGCAATCTGAACTTGACAGAACTGACAGCAGCTGCCACAACCAATG
CCAGCAATGCAGGCGATTCACCAGAAACACAATCTACACCTGCTACAATC
AAAATAAAGGCCAAAAATACAACATCTTCTGCTAAAACACCGACAGGCTC
TATCGTAGAAGCAACGGATGAAAGCGCAGTAACAGCTGCAGCACACACTA
TATTAGCACAAGTGATGAAGGATAGTGAAGTGGAGAAAGCAGTCGAAGGT
GAGGAGGGACAAGATGAGAACACTTACATCGAAATCCCTTTGAATGTCGT
TCTTGAAGCCACCATTGAAGCCGAAAACGCCGCTACAAACGAAAGCACGC
CCAAAGTTGAACTAAAACCACATCAGGCGGCCTGGCGAAAGAAAGCCAAC
AGTTCTTCATTACAATTGGATGGTTTTGATTTGGTAAACATTGAAAACTC
CAACGCTAGCATGGAAGAATTGGAAGCAAACGCACGTGAAACGTTGAGCT
CGTTCCGTCGTAAAAGAGTTCGCTTCCCTAACGGAACATCCAAACTTCCA
CAAGAATGTTTCTTCTGTTTGAAGAAGTTGTCTAACCGAAAGAAGCTTCG
TGAACATCAGTTCAGTGTTCATTTCAAAAACGTTGGTGAATTTATGTGTG
gaatttgtaaacaaagatttgtgtTCGGGCGTCAGTTGAAAGCGCACATG
TTGGTTCACTCAGATAACCGCAACTATCAATGTCAGTATTGTGGCCTGAC
TTGTAAACGACGCTCACATCTTCACAAACATGTTCAAACACACAACCAAG
AGCGAAACTATCGTTGTGATGTGTGCCATACGAACTTCAAAGTACAAGCA
GAACTGAAAGATCATTGTATGTCTGATCACAAAAATCAGACCAATCAGTG
TAACGTTTGTAAACAAACCCTACACACCCCATTCTCTGTTTACATCCACA
GCATGCGTCATTCGGGAACACGTGATCACATCTGCGAAACGTGTGGCGCA
TCCTTCAAACGCAAACAACATCTCATCGCCCACCGAAACACACATGCAGA
ACTACGCGAGAAAATAAAATGTCCGGCCTGCGATAAGGAAGTTCCGGATC
GGAAGTATCTCAGAAGACATATGGAACAGATGCACAAAGAATTGGCAGCA
GANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010302XLOC_010302Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018374-exon-sc0000297-1491911889:166868..166937TCONS_00018374-exon-sc0000297-1491911889:166868..166937Clytia hemisphaericaexon
TCONS_00018374-exon-sc0000297-1510915933:166868..166937TCONS_00018374-exon-sc0000297-1510915933:166868..166937Clytia hemisphaericaexon
TCONS_00018374-exon-sc0000297-1575043694:166868..166937TCONS_00018374-exon-sc0000297-1575043694:166868..166937Clytia hemisphaericaexon
TCONS_00018374-exon-sc0000297-1491911889:170996..171137TCONS_00018374-exon-sc0000297-1491911889:170996..171137Clytia hemisphaericaexon
TCONS_00018374-exon-sc0000297-1510915933:170996..171137TCONS_00018374-exon-sc0000297-1510915933:170996..171137Clytia hemisphaericaexon
TCONS_00018374-exon-sc0000297-1575043694:170996..171137TCONS_00018374-exon-sc0000297-1575043694:170996..171137Clytia hemisphaericaexon
TCONS_00018374-exon-sc0000297-1491911889:171195..172421TCONS_00018374-exon-sc0000297-1491911889:171195..172421Clytia hemisphaericaexon
TCONS_00018374-exon-sc0000297-1510915933:171195..172421TCONS_00018374-exon-sc0000297-1510915933:171195..172421Clytia hemisphaericaexon
TCONS_00018374-exon-sc0000297-1575043694:171195..172421TCONS_00018374-exon-sc0000297-1575043694:171195..172421Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000297supercontigsc0000297:166868..172421 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.9785	9.40565	5.70148	4.28913	16.8804	11.6461	10.933	11.6241	9.58003	10.9382	9.73476	6.069	9.18782	8.74121	8.2557	12.2668	8.22194	8.86878	5.04789	5.30735	5.93596	9.11873	7.41772	9.34037	14.2095	10.4508	4.82499	2.66246	7.2962	6.09131
Blast
[Close]
BLAST of TCONS_00018374 vs. Swiss-Prot (Human)
Match: ZBT41 (Zinc finger and BTB domain-containing protein 41 OS=Homo sapiens GN=ZBTB41 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.565e-22
Identity = 65/205 (31.71%), Postives = 100/205 (48.78%), Query Frame = 2 
Query:  842 CFFCLKKLSNRKKLREHQFSVHFKNVGE--FMCGICKQRFVFGRQLKAHMLVHSDNRNYQCQYCGLTCKRRSHLHKHVQTHNQERNYRCDVCHTNFKVQAELKDHCMSDH---------KNQTNQCNVCKQTLHTPFSVYIHSMRHSGTRDHICETCGASFKRKQHLIAHRNTHAELREKIKCPACDKEVPDRKYLRRHMEQMHK 1423
            CF C K +  R  L+EH   +H    GE   +C IC Q F  G   + H+ VH D++ Y+C  CG T  R  HL KH + H+ E+ ++C+ C   F  +  L  H  S H         K   +QC+VCK+      S+ +H   HSG + + C+ C  SF+ K+ L  H   H++ R    C  C+     +  L+ H++ +H+
Sbjct:  549 CFICGKSVRERTTLKEH-LRIH---SGEKPHLCSICGQSFRHGSSYRLHLRVHHDDKRYECDECGKTFIRHDHLTKHKKIHSGEKAHQCEECGKCFGRRDHLTVHYKSVHLGEKVWQKYKATFHQCDVCKKIFKGKSSLEMHFRTHSGEKPYKCQICNQSFRIKKTLTKHLVIHSDAR-PFNCQHCNATFKRKDKLKYHIDHVHE 748

HSP 2 Score: 85.5001 bits (210), Expect = 1.652e-17
Identity = 56/202 (27.72%), Postives = 92/202 (45.54%), Query Frame = 2 
Query:  833 PQECFFCLKKLSNRKKLREHQFSVHFKNVGEFMCGICKQRFVFGRQLKAHM-LVHSDNRNYQCQYCGLTCKRRSHLHKHVQTHNQERNYRCDVCHTNFKVQAELKDHCMSDHKNQTNQCNVCKQTLHTPFSVYIHSMRHSGTRDHICETCGASFKRKQHLIAHRNTHAELREKI---------KCPACDKEVPDRKYLRRHM 1408
            P +C +C +   +R    +HQ   H   +G F C IC ++F     LK H+   H   R + C  CG + + R+ L +H++ H+ E+ + C +C  +F+  +  + H    H ++  +C+ C +T      +  H   HSG + H CE CG  F R+ HL  H  +   L EK+         +C  C K    +  L  H 
Sbjct:  490 PFKCTYCEEHFKSRFARLKHQEKFH---LGPFPCDICGRQFNDTGNLKRHIECTHGGKRKWTCFICGKSVRERTTLKEHLRIHSGEKPHLCSICGQSFRHGSSYRLHLRVHHDDKRYECDECGKTFIRHDHLTKHKKIHSGEKAHQCEECGKCFGRRDHLTVHYKS-VHLGEKVWQKYKATFHQCDVCKKIFKGKSSLEMHF 687
The following BLAST results are available for this feature:
BLAST of TCONS_00018374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZBT411.565e-2231.71Zinc finger and BTB domain-containing protein 41 O... [more]
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