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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018376 ID=TCONS_00018376|Name=TCONS_00018376|organism=Clytia hemisphaerica|type=transcript|length=2430bpRun BLAST on NCBI protein sequence of TCONS_00018376-protein >TCONS_00018376-protein ID=TCONS_00018376-protein|Name=TCONS_00018376-protein|organism=Clytia hemisphaerica|type=polypeptide|length=500bp MMSMEQQNTDPLGLLSGIMEAEDLPTWSKVPVGKVLEPKEDKESPFPVNLRun BLAST on NCBI transcript from alignment at sc0000297:202771..250243+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018376 ID=TCONS_00018376|Name=TCONS_00018376|organism=Clytia hemisphaerica|type=transcript|length=47473bp|location=Sequence derived from alignment at sc0000297:202771..250243+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000297:202771..250243+ >TCONS_00018376 ID=TCONS_00018376|Name=TCONS_00018376|organism=Clytia hemisphaerica|type=CDS|length=21042bp|location=Sequence derived from alignment at sc0000297:202771..250243+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00018376 vs. Swiss-Prot (Human)
Match: GDAP2 (Ganglioside-induced differentiation-associated protein 2 OS=Homo sapiens GN=GDAP2 PE=1 SV=1) HSP 1 Score: 468.389 bits (1204), Expect = 6.318e-156 Identity = 235/504 (46.63%), Postives = 340/504 (67.46%), Query Frame = 3
Query: 192 DPLGLLSGIMEAEDLPTW---------SKVPVGKVLEPKEDKESPFPVNLDINEKVCLWEGDITKLKCDVIINSTNEALNDKNPVSERIHKVAGPLLREEVRQELQSCRTGEAKMTKGYELPARYVIHTVGPRYNTKYKTAAESALFMSYRNVLQLARENNLSSIGLGVINTTRRGYPPEEGAHIALRTVRRFLEKNIDAFQVVVFVVEPIDESTYKRLMPLYFPRDAREECYAAECLPSDVGNEDGEPFLPERQIRIMDKPLKTMS---------GIDLLNSFVGRHPFSKVAADNDTKRKARLQGRSQEEMEFLEHQRKYSQWVKRSRTEDFTEISKMGFLYNPGVDRNGRPVVVFVGRYFPANAIDLNKAVSYFIHFMDSIASREYVLVYFXXXXXXXXXXXXGFLKDFYELLDLKYRRNMHQLYIVHGNILQRILGWFFLMINAASIKDKVEFIQGVQYLYDYINPDQLEIPPFVMEFDVQENGPNYHTPVTSYHKTQNL 1649
DPLG S ++ + LP+W S ++ + ++ SPF N D+N KV LW+GD+ L C I+N++NE+L DKNPVSE I +AGP L+E++ Q+L+ CRTGEAK+TKG+ L AR++IHTVGP+Y ++Y+TAAES+L+ YRNVLQLA+E ++SS+G VIN+ +RGYP E+ HIALRTVRRFLE + + + VVF V ++E TY++L+PLYFPR +EE + LP+D+GN +GEP +PERQIRI +KP G+DL SF+G H F+++ D D +RK LQG+ E +HQR Y++W+ ++R+ED ++I+ + LY GVD GR V+V VGR P ID++KA+ YFIH MD IA +EYVLVYFHTLT++ + LD FLK Y+++D+KY+RN+ +Y VH ++ WFF + + +KDK+ + + L+ I+P+Q++ PPFV+E+D +ENGP Y TSY + +L
Sbjct: 2 DPLGAPSQFVDVDTLPSWGDSCQDELNSSDTTAEIFQ-EDTVRSPFLYNKDVNGKVVLWKGDVALLNCTAIVNTSNESLTDKNPVSESIFMLAGPDLKEDL-QKLKGCRTGEAKLTKGFNLAARFIIHTVGPKYKSRYRTAAESSLYSCYRNVLQLAKEQSMSSVGFCVINSAKRGYPLEDATHIALRTVRRFLEIHGETIEKVVFAVSDLEEGTYQKLLPLYFPRSLKEENRSLPYLPADIGNAEGEPVVPERQIRISEKPGAPEDNQEEEDEGLGVDL--SFIGSHAFARMEGDIDKQRKLILQGQLSEAALQKQHQRNYNRWLCQARSEDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIHVMDHIAVKEYVLVYFHTLTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVSGLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYDARENGPYY----TSYPPSPDL 497 The following BLAST results are available for this feature:
BLAST of TCONS_00018376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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