TCONS_00018382 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018382
Unique NameTCONS_00018382
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1217

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018382 ID=TCONS_00018382|Name=TCONS_00018382|organism=Clytia hemisphaerica|type=transcript|length=1217bp
cctgattacccatgattcttttcgaccgtgaaatggcctattggaGGGCG
TTTAACACCCATTGGTCGTTTTACGTGGACTAATATAAACTTTTCTTTAG
TGAAAAACAAACAATACAAAAATTTACGGTGATCGATTTGCGAAGGACTC
GTACCAGTAGCCGTAGGCCGTAAAATTTCATGgttgaaatgaaatttcac
ttttttagtgaaaaaaagcAATATAAGAAGTAAACAGCTGAATATCATCA
ACAACAATCTCATGATTTGATCACTTTGGGATAATGGGAGGACGAAATAG
TACTGAAAAGAATTCAACTGATCCGGGTGAAGAATGGAGgaAGAAAAGGc
gtaaagaaaaattttactgtttcattttcaaagagcAAGAGTGGTGGTTC
TCagatGTCTTCGGCCTTCTTCGCGAGAAAAGATACGTAGAATTTGAAGA
AATCGTCAAACACGAAAAAGGAGTTATCAATAATCTGACATACGAAAATA
AATATGAACCGACTATGCTAATACATGCAATCGAATATACAAAAGAAAAT
CCCCATTATTATCCCGAAGGTTATGATCATTCCATTGTTGATTACCTTTC
CAACCATGAGCATTGTGATATAAATATACCAGATAGTATTAGTCAGACAC
CGTTCTATTTTGCTACCGTAAGTGGAAATCTACCTACTGTCAAAAGTTTA
CTAGCAAGAGATCGTAgtgttttaaacaaaacaacTTTTATGAGAAGTCC
TCTACATCTTGCAGTTAGGCATAAAGAacttgttgaattttttttacaac
aaCCTGATCTTGATGTTGACATTCGAGATTATCATAGAAAAACTCCAGAC
CAGATTGAAGGTATTGATAAAGATATTAAGAAAATGATTCAAGACTACAG
GAAGAAATCTAAAGAAAACAAACAATAAGAGACTTGTCAAAGAGTccaga
tatttttttatttttttgcaaattattttttgtaCCTAGCTTATAAATTG
ATTTATAAATTGTATCataattctttgtattttataGTTAATTTATCATA
CATCTGTCTACTTCATACTATTATTTCCATTGTACTGTCAGTTTTTCGTA
TAGTGAAATCACGACTTGTGATTGTCGTTGCATCCAAATTAACTGCttgg
atttaacacaggttaaatcGCGGTTTAATCTTTATTTGATAAGCGCTACA
TCATTCTAATGGCTGGG
Run BLAST on NCBI

protein sequence of TCONS_00018382-protein

>TCONS_00018382-protein ID=TCONS_00018382-protein|Name=TCONS_00018382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MGGRNSTEKNSTDPGEEWRKKRRKEKFYCFIFKEQEWWFSDVFGLLREKR
YVEFEEIVKHEKGVINNLTYENKYEPTMLIHAIEYTKENPHYYPEGYDHS
IVDYLSNHEHCDINIPDSISQTPFYFATVSGNLPTVKSLLARDRSVLNKT
TFMRSPLHLAVRHKELVEFFLQQPDLDVDIRDYHRKTPDQIEGIDKDIKK
MIQDYRKKSKENKQ
Run BLAST on NCBI

transcript from alignment at sc0000297:358602..361134+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018382 ID=TCONS_00018382|Name=TCONS_00018382|organism=Clytia hemisphaerica|type=transcript|length=2533bp|location=Sequence derived from alignment at sc0000297:358602..361134+ (Clytia hemisphaerica)
cctgattacccatgattcttttcgaccgtgaaatggcctattggaGGGCG
TTTAACACCCATTGGTCGTTTTACGTGGACTAATATAAACTTTTCTTTAG
TGAAAAACAAACAATACAAAAATTTACGGTGATCGATTTGCGAAGGACTC
GTACCAGTAGCCGTAGGCCGTAAAATTTCATGgttgaaatgaaatttcac
ttttttagtgaaaaaaagcAATATAAGAAGTAAACAGCTGAATATCATCA
ACAACAATCTCATGATTTGATCACTTTGGGATAATGGGAGGACGAAATAG
TACTGAAAAGAATTCAACTGATCCGGGTGAAGAATGGAGGTAAACATTTA
GTTATTCgaaacataactttttattcTATTGATGGATTATCCAACTAATT
AATTTTAAACTTgaacttaaacttaaacttcaATAAACAGAAACAGCAAC
TTTCATGATGTTCAATTGTACTTTAATTGGATCAATTTTCGGGAGATTTA
TTTTTGCGTttccgcaaatttttgtcttttttacggaaacaaaactttcg
aaatcgCTTAAGATCACTGTCTCACGAAGTTCAATCCAtacgaaattttt
aagataAGATTTTCGGGTCCTTTAAATAtccttaaaaattttcaatttgt
gaCAAAAATAAGCGTTTCAAGGACCGTTTTCGACAGATTTTTTGCTAATt
ggcgaaattaaatccacgcggaatttttaaaaacaaaattcgcAATTTTG
GCTCGAGAAATCACAATCTAATAAAAGtattaatatattatattttgata
ttttaggaAGAAAAGGcgtaaagaaaaattttactgtttcattttcaaag
agcAAGAGTGGTGGTTCTCaggtattcttacttttttattcCTTTGTTAC
AGAACAACTTTTCGTCAGTTTAAGACCTCTTTTTCGTAATTATGGAAAAC
TTGCGACTTTACATcttatttttaacaatattattattttctgTAGATTT
TGGGCCaccagcctgaaatattttttagagtttttttattcatgatatgc
accactggagagtcttctaataacttttaaaattttcctaacaatagaaa
aagtgacgtatttggcggaacaaaaacagaaaagttgcataatttcgtga
agtcattgcccagtggtgcatatcatgaataacacataccgtattacttc
gaataaacgcccgggcgtttattaaatttttttgcaagtataccctttgt
tttagttctttatcaggattttagtgcaaaatttcgTTGGTTCAACGatt
aaaattgcatcgaaaactgctctggttaaaagaaatgactaaaatcttcc
ttttcaaacccaatcaacgctggtattgaagtattaaagtcCCAAGCTTC
ACCCCTCCCctagagggggcgtttattcgagggggcgtttaaaagaaggg
gaaTGTTTATTCTAAGTAATACGGTATATATACGGTGTTTACTTGTTGTT
TTCTTAAATTCTTGTTTTGTTCCTATAATAAGCAGTGAAGATATTAGACT
TTCAACCGAGAAGCTCATGGAATACTTTGCTACTTTTAAAGGTTTAGAAA
TTTGATATGCTTTATTAAAGCTTAATCCTGCTAAGGATTATTCCATTTCT
TTCTCATCtctttatacctcaattttcgtGCCATAATATGACTATGGAAT
GAACttcttttattttctagatGTCTTCGGCCTTCTTCGCGAGAAAAGAT
ACGTAGAATTTGAAGAAATCGTCAAACACGAAAAAGGAGTTATCAATAAT
CTGACATACGAAAATAAATATGAACCGACTATGCTAATACATGCAATCGA
ATATACAAAAGAAAATCCCCATTATTATCCCGAAGGTTATGATCATTCCA
TTGTTGATTACCTTTCCAACCATGAGCATTGTGATATAAATATACCAGAT
AGTATTAGTCAGACACCGTTCTATTTTGCTACCGTAAGTGGAAATCTACC
TACTGTCAAAAGTTTACTAGCAAGAGATCGTAgtgttttaaacaaaacaa
cTTTTATGAGAAGTCCTCTACATCTTGCAGTTAGGCATAAAGAacttgtt
gaattttttttacaacaaCCTGATCTTGATGTTGACATTCGAGATTATCA
TAGAAAAACTCCAGACCAGATTGAAGGTATTGATAAAGATATTAAGAAAA
TGATTCAAGACTACAGGAAGAAATCTAAAGAAAACAAACAATAAGAGACT
TGTCAAAGAGTccagatatttttttatttttttgcaaattattttttgta
CCTAGCTTATAAATTGATTTATAAATTGTATCataattctttgtatttta
taGTTAATTTATCATACATCTGTCTACTTCATACTATTATTTCCATTGTA
CTGTCAGTTTTTCGTATAGTGAAATCACGACTTGTGATTGTCGTTGCATC
CAAATTAACTGCttggatttaacacaggttaaatcGCGGTTTAATCTTTA
TTTGATAAGCGCTACATCATTCTAATGGCTGGG

Coding sequence (CDS) from alignment at sc0000297:358602..361134+

>TCONS_00018382 ID=TCONS_00018382|Name=TCONS_00018382|organism=Clytia hemisphaerica|type=CDS|length=1935bp|location=Sequence derived from alignment at sc0000297:358602..361134+ (Clytia hemisphaerica)
ATGGGAGGACGAAATAGTACTGAAAAGAATTCAACTGATCCGGGTGAAGA
ATGGAGgaAGAAAAGGcgtaaagaaaaattttactgtttcattttcaaag
agcAAGAGTGGTGGTTCTCagatGTCTTCGGCCTTCTTCGCGAGAAAAGA
TACGTAGAATTTGAAGAAATCGTCAAACACGAAAAAGGAGTTATCAATAA
TCTGACATACGAAAATAAATATGAACCGACTATGCTAATACATGCAATCG
AATATACAAAAGAAAATCCCCATTATTATCCCGAAGGTTATGATCATTCC
ATTGTTGATTACCTTTCCAACCATGAGCATTGTGATATAAATATACCAGA
TAGTATTAGTCAGACACCGTTCTATTTTGCTACCGTAAGTGGAAATCTAC
CTACTGTCAAAAGTTTACTAGCAAGAGATCGTAgtgttttaaacaaaaca
acTTTTATGAGAAGTCCTCTACATCTTGCAGTTAGGCATAAAGAacttgt
tgaattttttttacaacaaCCTGATCTTGATGTTGACATTCGAGATTATC
ATAGAAAAACTCCAGACCAGATTGAAGGTATTGATAAAGATATTAAGAAA
ATGATTCAAGACTACAGGAAGAAATCTAAAGAAAACAAACAATAAATGGG
AGGACGAAATAGTACTGAAAAGAATTCAACTGATCCGGGTGAAGAATGGA
GgaAGAAAAGGcgtaaagaaaaattttactgtttcattttcaaagagcAA
GAGTGGTGGTTCTCagatGTCTTCGGCCTTCTTCGCGAGAAAAGATACGT
AGAATTTGAAGAAATCGTCAAACACGAAAAAGGAGTTATCAATAATCTGA
CATACGAAAATAAATATGAACCGACTATGCTAATACATGCAATCGAATAT
ACAAAAGAAAATCCCCATTATTATCCCGAAGGTTATGATCATTCCATTGT
TGATTACCTTTCCAACCATGAGCATTGTGATATAAATATACCAGATAGTA
TTAGTCAGACACCGTTCTATTTTGCTACCGTAAGTGGAAATCTACCTACT
GTCAAAAGTTTACTAGCAAGAGATCGTAgtgttttaaacaaaacaacTTT
TATGAGAAGTCCTCTACATCTTGCAGTTAGGCATAAAGAacttgttgaat
tttttttacaacaaCCTGATCTTGATGTTGACATTCGAGATTATCATAGA
AAAACTCCAGACCAGATTGAAGGTATTGATAAAGATATTAAGAAAATGAT
TCAAGACTACAGGAAGAAATCTAAAGAAAACAAACAATAAATGGGAGGAC
GAAATAGTACTGAAAAGAATTCAACTGATCCGGGTGAAGAATGGAGgaAG
AAAAGGcgtaaagaaaaattttactgtttcattttcaaagagcAAGAGTG
GTGGTTCTCagatGTCTTCGGCCTTCTTCGCGAGAAAAGATACGTAGAAT
TTGAAGAAATCGTCAAACACGAAAAAGGAGTTATCAATAATCTGACATAC
GAAAATAAATATGAACCGACTATGCTAATACATGCAATCGAATATACAAA
AGAAAATCCCCATTATTATCCCGAAGGTTATGATCATTCCATTGTTGATT
ACCTTTCCAACCATGAGCATTGTGATATAAATATACCAGATAGTATTAGT
CAGACACCGTTCTATTTTGCTACCGTAAGTGGAAATCTACCTACTGTCAA
AAGTTTACTAGCAAGAGATCGTAgtgttttaaacaaaacaacTTTTATGA
GAAGTCCTCTACATCTTGCAGTTAGGCATAAAGAacttgttgaatttttt
ttacaacaaCCTGATCTTGATGTTGACATTCGAGATTATCATAGAAAAAC
TCCAGACCAGATTGAAGGTATTGATAAAGATATTAAGAAAATGATTCAAG
ACTACAGGAAGAAATCTAAAGAAAACAAACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010308XLOC_010308Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018382-proteinTCONS_00018382-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018382-exon-sc0000297-1491911889:358602..358940TCONS_00018382-exon-sc0000297-1491911889:358602..358940Clytia hemisphaericaexon
TCONS_00018382-exon-sc0000297-1510915933:358602..358940TCONS_00018382-exon-sc0000297-1510915933:358602..358940Clytia hemisphaericaexon
TCONS_00018382-exon-sc0000297-1575043694:358602..358940TCONS_00018382-exon-sc0000297-1575043694:358602..358940Clytia hemisphaericaexon
TCONS_00018382-exon-sc0000297-1491911889:359408..359472TCONS_00018382-exon-sc0000297-1491911889:359408..359472Clytia hemisphaericaexon
TCONS_00018382-exon-sc0000297-1510915933:359408..359472TCONS_00018382-exon-sc0000297-1510915933:359408..359472Clytia hemisphaericaexon
TCONS_00018382-exon-sc0000297-1575043694:359408..359472TCONS_00018382-exon-sc0000297-1575043694:359408..359472Clytia hemisphaericaexon
TCONS_00018382-exon-sc0000297-1491911889:360322..361134TCONS_00018382-exon-sc0000297-1491911889:360322..361134Clytia hemisphaericaexon
TCONS_00018382-exon-sc0000297-1510915933:360322..361134TCONS_00018382-exon-sc0000297-1510915933:360322..361134Clytia hemisphaericaexon
TCONS_00018382-exon-sc0000297-1575043694:360322..361134TCONS_00018382-exon-sc0000297-1575043694:360322..361134Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000297supercontigsc0000297:358602..361134 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.25256	1.51016	0.637615	0.389879	0.759424	0.5626	1.94576	2.28759	2.16512	2.09404	4.67126	1.59395	2.03648	1.60441	0.259812	0.364608	1.63814	1.89569	1.08502	1.95757	2.10984	2.24079	2.30025	1.98119	1.70049	3.33881	2.94392	2.67828	4.92219	3.6219
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018382 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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