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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018392 ID=TCONS_00018392|Name=TCONS_00018392|organism=Clytia hemisphaerica|type=transcript|length=218bp
TTAGGATTGAGAAGAGGATGTGACACTACCAAAGAGgaattaaaacaatt
ttgcaAAGGAAAGATCTCGCATTACAAGATTCCAAGATATATTGAGTTTG
TTGATGAATACCCCATGACTGTCACTGGCAAGGTCAAAAAGGTCGAAATT
CGTCAgcaaatgaaattgaaaatgggTTTGGAATGATTCTTGGCTATTTA
Tataaggtttttgaaaaa Run BLAST on NCBI transcript from alignment at sc0000297:315430..317204- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018392 ID=TCONS_00018392|Name=TCONS_00018392|organism=Clytia hemisphaerica|type=transcript|length=1775bp|location=Sequence derived from alignment at sc0000297:315430..317204- (Clytia hemisphaerica)
TTAGGATTGAGAAGAGGATGTGACACTACCAAAGAGGAATTAAAACAATT
TTGCAAAGGAAAGGTAAAGTTGTTGGTTTTCTACCTAGATTCATGTTATA
AAGACTCATCCTCTATGCAGATTCATGGGAACTGTCCTCTGTAATCTTAA
TGACTTGCAATAATTAGATATGTTCACCTGTTAATCAATTACATTCGGTA
AGTCTGAAGAAATGGTATCTGTTGAATGAATCATTTTAGTGCTGTGAATA
TATAATCCTTGTAACCTGTTTTCCTCTTCTCCATAGATCTCGCATTACAA
GATTCCAAGATATATTGAGTTTGTTGATGAATACCCCATGACTGTCACTG
GCAAGGTACGTGACCTAGCATTCGAGCCCAGTCTCTTTGTAACGTCAAAT
ACACCTGTCTCACCAAATAATTTCTGCTTATCAAGTCTCTTTAAAAGTAT
TTAAGCCCTCCTTTATTTGATGACGTTTCCTTAAAATTCTGCACTTCCAA
TCTTACTGCCCGAGTTTATGCATTCGAGACAATTCAAGGGGTCAGGGGAC
GGTATAAAGCAAAGTTGACATGTCTCCAAAATCACCGTCAACTTTGCTCG
ACGACGGTAAAAAACACCAAGATACCGTCGTCTGTTTAGGTGAACAAAGG
CGATATAGAGCTTAGAGTGTACATCAACTATCGACTTTGTTTTGTATCAT
TTCACTTACCGTCGCCCTCGATATCCTCCGATACATAAATACGGTAGTTT
NGTATCGATTTCACTTACCGTCGCCCTCGATATTCTCCGATACATAAACT
CGGTAGCTCTAAAGTTCAGACGGTAAGGTAAACCATATTAAGAAACCGAT
TAAATTCATCATTTTGGTAAGTTGTGTTGTTGTACTGACGCCCAGGTTGT
TGATGCTCCCCAAGGTTTTGGAGAATAACTATCCAACGGTGTTTTTTTTT
CTCCTCAACTACCGTGCTCAAAAGATGGACTACTTGTTAGCCTTTTTGTA
TTCATAATATCTTTTATATTCAAATCTCGATTACTATTAGACGAGGAGTT
AAAGAGGGATTTTATTTTGAATACATTATCAAGCAACCCCCTTTACCTAA
TAAATGTCTATCCAATTGTAATATACCACACAAAAGTTGTGTAGAAAATG
CCTGTCTCAGCTTCTCGGTCGTGTTTGAAACTCCAAATGAAAATATTCTA
AAAAGCTAACCTGAAAATCACAATCAGCAAAACATCCCACGGGATAAGTA
ATAAAAGTCTTTTAACCAGGGGACGCAAAAGATCTTGTAACTTGTAGGTG
CAGCTTTTCAGTCTGGGGTTTTCCCAAATATACTAATTTTTACCAAAACG
AAACTCTTGGTAAGGGTTTAAGTTTAGGCTACTTGGAGGATTATTCCTAA
TGGGATTTCATTAGACTCTATAGTCTAAGACAAATCACTATCTAAAAGAA
ATAAGCCCAAAGCCGAAGAAAATTCACAAATGGGTTTTTTGCCGAAAAGA
GTTTACAGTCGGTAGAGTTTAACAGTCTTCGAAATTCTTCGAATCTCTCC
AGCCGATTTTTTTACGTATATACGTATACCGCCATATTTTCCCGCCTGAA
AAATTTGCAGGGTGGTCAAATTTTCTAATATCAAATGGTGTCGTAGTAGC
TCATTCAATGAAACATAGTTATTGCTTTGTTATTTTCAGGTCAAAAAGGT
CGAAATTCGTCAGCAAATGAAATTGAAAATGGGTTTGGAATGATTCTTGG
CTATTTATATAAGGTTTTTGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018392-exon-sc0000297-1575043694:317142..317204 | TCONS_00018392-exon-sc0000297-1575043694:317142..317204 | Clytia hemisphaerica | exon |
| TCONS_00018392-exon-sc0000297-1575043694:316850..316918 | TCONS_00018392-exon-sc0000297-1575043694:316850..316918 | Clytia hemisphaerica | exon |
| TCONS_00018392-exon-sc0000297-1575043694:315430..315515 | TCONS_00018392-exon-sc0000297-1575043694:315430..315515 | Clytia hemisphaerica | exon |
| TCONS_00018392-exon-sc0000297-1510915933:317142..317204 | TCONS_00018392-exon-sc0000297-1510915933:317142..317204 | Clytia hemisphaerica | exon |
| TCONS_00018392-exon-sc0000297-1510915933:316850..316918 | TCONS_00018392-exon-sc0000297-1510915933:316850..316918 | Clytia hemisphaerica | exon |
| TCONS_00018392-exon-sc0000297-1510915933:315430..315515 | TCONS_00018392-exon-sc0000297-1510915933:315430..315515 | Clytia hemisphaerica | exon |
| TCONS_00018392-exon-sc0000297-1491911889:317142..317204 | TCONS_00018392-exon-sc0000297-1491911889:317142..317204 | Clytia hemisphaerica | exon |
| TCONS_00018392-exon-sc0000297-1491911889:316850..316918 | TCONS_00018392-exon-sc0000297-1491911889:316850..316918 | Clytia hemisphaerica | exon |
| TCONS_00018392-exon-sc0000297-1491911889:315430..315515 | TCONS_00018392-exon-sc0000297-1491911889:315430..315515 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000297 | supercontig | sc0000297:315430..317204 - |
Blast
BLAST of TCONS_00018392 vs. Swiss-Prot (Human)
Match: ACSF2 (Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 4.927e-17 Identity = 32/58 (55.17%), Postives = 47/58 (81.03%), Query Frame = 1
Query: 7 LRRGCDTTKEELKQFCKGKISHYKIPRYIEFVDEYPMTVTGKVKKVEIRQQMKLKMGL 180
L+ G +TT EE+K FCKGKISH+KIP+YI FV YP+T++GK++K ++R+QM+ + L
Sbjct: 558 LKDGEETTVEEIKAFCKGKISHFKIPKYIVFVTNYPLTISGKIQKFKLREQMERHLNL 615
The following BLAST results are available for this feature:
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